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  • Articles: DFG German National Licenses  (4)
  • 1990-1994  (4)
  • Chemistry  (4)
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  • Articles: DFG German National Licenses  (4)
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  • 1
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformational behavior of the synthetic peptide, Boc-Gly-Val-Gly-Gly-Leu-OMe, containing the X-Gly-Gly and Gly-Gly-X (X = Val or Leu) repeating sequences and constituting a fragment of elastin was investigated by molecular mechanics and molecular dynamics (MD) simulation. The results suggest that, irrespective of the approximations used, the molecule shows a manifold of low energy conformations characterized by γ-turns and type II β-turns. Furthermore, MD simulations point out a conformational floppiness due to very low barriers between different conformations. Experimental CD measurements in a virtually apolar medium (dioxane - ε = 2.209), which better mimics the vacuum conditions of the simulation, support the theoretical results. The general emerging picture, indicating the molecule as characterized by a combination of flexibility with conformational preferences, is in agreement with previous experimental findings and enriches of new aspects the description of the microscopic behavior of this molecule suggesting more detailed interpretation of previous data.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformational preference of Cα,α-diphenylglycinc (Døg) and Cα,α-dibenzylglycine (Dbz) residues was assessed in selected derivatives and small peptides by conformational energy computations, ir absorption, 1H-nmr, and x-ray diffraction. Conformational energy computations on the two monopeptides strongly support the view that these Cα,α-symmetrically disubstituted glycines are conformationally restricted and that their minimum energy conformation falls in the fully extended (C5) region. The results of the theoretical analyses appear to be in agreement with the solution and crystal-state structural propensities of three derivatives and seven di-and tripeptides.
    Additional Material: 6 Ill.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The possibility of using molecular dynamics techniques as a tool for simulated annealing is tested in the case of the molecule of biological interest N-acetyl, N′-methyl amides of 3(S)-hydroxy, 4(S)-amino 6-methyl heptanoic acid [(3S, 4S)-statine] and of its (3R,4S) diastereomer. The approach is able to reach global minimum in the conformational space in the case of the mentioned molecule. A description of the method is given. The use of fractional fluctuations of the internal potential energy as an indicator able to point out transition from a given minimum region to a deeper one is investigated. The results about the lowest energy conformation of (3S,4S) diastereomer are in fairly good accordance with the results obtained in the case of search within the whole Conformational hyperspace.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The preferred conformation of the Cα,α-diphenylglycine residue was determined in simple derivatives and dipeptides. The dipeptides were synthesized by the 5(4H)-oxazolone (from the N-para-bromobenzoylated amino acid) method. This activated intermediate and a reaction by-product, para-bromobenzoylbenzhydrylamine, were characterized inter alia by x-ray diffraction. Conformational energy calculations on the Cα,α-diphenylglycine mono-peptide, Ac-Døg-NHMe, indicate that this Cα,α-symmetrically disubstituted residue is conformationally restricted and that its minimum energy conformation falls in the fully extended (C5) region. The results of the theoretical analysis are in agreement with the solution and crystal-state structural tendency of mClAc-Døg-OH, Z-Døg-OtBu, pBrBz-Døg-Gly-OMe and its tert-butyl ester analogue, determined by ir absorption, lH-nmr, and x-ray diffraction, and also described in this work. The implications for the use of the Døg residue in designing conformationally constrained analogues of bioactive peptides are briefly discussed.
    Additional Material: 7 Ill.
    Type of Medium: Electronic Resource
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