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  • ACC synthase  (2)
  • Phosphorylation  (2)
  • Principal components analysis  (2)
  • 1
    ISSN: 1432-2013
    Keywords: Cardiac Ca channels ; Butanedione monoxime ; Phosphorylation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract A chemical phosphatase, butanedione monoxime (BDM, at 12–20 mM), reduced open probability (P 0) of single cardiac L-type Ca2+ channels in cellattached patches from guinea-pig ventricular myocytes, without effect on the amplitude of single-channel current, the mean open time or the mean shorter closed time, but it increased mean longer closed time and caused a fall in channel availability. A decrease in the mean time between first channel opening and last closing within a trace was principally due to an inhibition of the longer periods of activity. As a result, the time course of the mean currents, which resolved into an exponentially declining and a sustained component, was changed by an increase in the rate of the exponential phase and a profound reduction of the sustained current. Essentially similar results were obtained when studying whole-cell Ba2+ currents. The inactivation of the whole-cell Ca2+ currents was composed of two exponentially declining components with the slower showing a significantly greater sensitivity to BDM, an effect that was much more pronounced in myocytes exposed to isoprenaline with adenosine 5′-O-(3-thiotriphosphate) (ATP[γS]) in the pipette solution. The actions of BDM, which are the opposite of those produced by isoprenaline, suggest that the level of phosphorylation affects processes involved in the slow regulation of channel activity under basal conditions and that several sites (and probably several kinases) are involved. Channels with an inherently slow inactivation would seem to be converted into channels with a rapid inactivation by a dephosphorylation process.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Pflügers Archiv 436 (1998), S. 238-247 
    ISSN: 1432-2013
    Keywords: Key words Calcium ; Heart ; Hypothermia ; Phosphorylation ; Protein kinase A
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract  Temperature normally affects peak L-type Ca2+ channel (CaCh) current with a temperature coefficient (Q 10) of between 1.8 and 3.5; in cardiomyocytes attenuating protein kinase A activity increases Q 10 whilst activating it lowers Q 10. We examine temperature effects using cloned human cardiac CaChs expressed in Xenopus oocytes. Peak inward currents (I Ba) through expressed CaChs (i.e. α1Cα2/δaβ1b) exhibited a Q 10 of 5.8±0.4 when examined between 15 and 25°C. The nifedipine-sensitive I Ba exhibited a higher Q 10 of 8.7±0.5, whilst the nifedipine-insensitive I Ba exhibited Q 10 of 3.7±0.3. Current/voltage (I/V) relationships shifted to negative potentials on warming. Using instead a different CaCh β subunit isoform, β2c, gave rise to an I Ba similar to those expressed using β1b. We utilized a carboxyl deletion mutant, α1C-Δ1633, to determine the temperature sensitivity of the pore moiety in the absence of auxiliary subunits; I Ba through this channel exhibited a Q 10 of 9.3±0.3. However, the Q 10 for macroscopic conductance was reduced compared to that of heteromeric channels; decreasing from 5.0 (i.e. α1Cα2/δaβ1b) and 3.9 (i.e. α1Cα2/δaβ2c) to 2.4 (α1C-Δ1633). These observations differ markedly from those made in studies of cardiomyocytes, and suggest that enhanced sensitivity may depend on the membrane environment, channel assembly or other regulatory factors.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1573-5028
    Keywords: 1-aminocyclopropane-1-carboxylic acid (ACC) ; ACC synthase ; S-adenosylmethionine (AdoMet) ; ethylene ; polymerase chain reaction (PCR) ; Vigna radiata
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The polymerase chain reaction (PCR) was used to produce 3 putative clones for ACC synthase from etiolated mung bean (Vigna radiata Rwilcz cv. Berken) hypocotyls. This was accomplished by utilizing genomic DNA from mung bean and degenerate primers made from information derived from highly conserved regions of ACC synthase from different plant tissues. The total length of pMAC-1, pMAC-2 and pMAC-3 are 308, 321, and 326 bp, respectively, all of which code for 68 amino acids. The introns for pMAC-1, pMAC-2 and pMAC-3 are 92, 105, and 110 bp, respectively. The degrees of homology at the DNA level for each of these clones is ca. 80% in their coding region and ca. 50% in their respective introns. This is the first report providing evidence that there are at least 3 genes for ACC synthase in etiolated mung bean.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1573-5028
    Keywords: 1-aminocyclopropane-1-carboxylic acid (ACC) ; ACC synthase ; indole-3-acetic acid (IAA) ; ethylene ; Vigna radiata
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract 1-Aminocyclopropane-1-carboxylate (ACC) synthase (EC 4.4.1.14) is the key regulatory enzyme in the ethylene biosynthetic pathway. The identification and characterization of a full-length cDNA (pAIM-1) 1941 bp in length for indole-3-acetic acid (IAA)-induced ACC synthase is described in this paper. The pAIM-1 clone has an 87 bp leader and a 402 bp trailing sequence. The open reading frame is 1452 bp long encoding for a 54.6 kDa polypeptide (484 amino acids) which has a calculated isoelectric point of 6.0. In vitro transcription and translation experiments support the calculated molecular weight and show that the enzyme does not undergo processing. Eleven of the twelve amino acid residues which are conserved in aminotransferases are found in pAIM-1. The sequence for pMAC-1 which is one of the 5 genes we have identified in mung bean is contained in pAIM-1. pAIM-1 shares between 52 to 65% homology with previously reported sequences for ACC synthase at the protein level. There is little detectable pAIM-1 message found in untreated mung bean tissues; however, expression is apparent within 30 min following the addition of 10 μM IAA reaching a peak after approximately 5 h with a slight decrease in message after 12 h. These changes in message correlate with changes in ACC levels found in these tissues following treatment with 10 μM IAA.
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Plant ecology 51 (1983), S. 141-155 
    ISSN: 1573-5052
    Keywords: Correlation matrix ; Dispersion matrix ; Forest model ; Hierarchical structure ; Ordination ; Principal components analysis ; Simulation ; Succession
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A model of a 1/12th ha forest stand, FORET, generated 10 000 years of simulated species succession. Approximately the first third of these results were analyzed by principal component analysis as if they were collected field data to give the trajectory of the community particle in a collapsed species space. The ordination axis orientation was performed on a dispersion matrix and correlation matrix between species. In both cases, however, the eigen vectors were applied to the data matrix which had not been transformed to unit species variance. This facilitated comparison of species dispersion and correlation structure; it emerged they were very different. Correlation structure gave large weights to understory species while dispersion emphasized the dominant overstory species. This implies a decomposition of simulated stand behavior into overstory and understory, even though such decomposition was not formally built into the model. This decomposition would seem to pertain to real vegetation. Principal component analysis was able to express insightful differences between data structure with and without the unit variance transformation implicit in the correlation matrix. This flexibility of the ordination method proved valuable in uncovering unsuspected ordering principles in the model. Complex simulated data allow the ordination technique to demonstrate its capacity to generate new hypotheses, which hypotheses can then be simply validated by a return to the structure of the model but with the hindsight of the analysis. The generation of new hypotheses is not possible if the simulation is of a simple coenocline; on the other hand, ordination of test field data does not allow the simple validation of new hypotheses, for in the field there is not a defined algorithm to which the researcher can return.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Plant ecology 56 (1984), S. 147-160 
    ISSN: 1573-5052
    Keywords: Data transformation ; Ordination ; Phytoplankton ; Principal components analysis ; Scale
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Data transformation is seen here as an aspect of scaling such that we are less interested in the quirks and properties of each transformation but are more concerned with the general scaling properties and trends of suites of transformations. Over two years of daily phytoplankton abundance data for 30 species from a temperate lake (Llyn Maelog, North Wales) were subjected to a series of scale-ordered transformations. Two major classes of transformation were systematically varied: binary and smoothing. Binary transformation scaled the cutoff threshold between ‘presence’ and ‘absence’ of a species to various levels of abundance. With successively smaller universes and smoothing windows and successive species exclusion, ordinations of sample dates revealed smaller scaled structures in the order: annual cycles of species turnover, seasonal areas of attraction and uniqueness of individual sample dates. Gradual increases in the length of the smoothing window resulted in gradual shifts in the positions of points in sample data ordination, but not necessarily in the species ordinations. Thus sample data structures are more stable with change in scale than are species data structures. These differences in stability are discussed in the context of filtering characteristics of data collection and data analysis. Transformations producing similar species statistics (means, variances and skews) did not generally give similar ordination results, while some transformations giving similar ordinations differed in species statistical parameters.
    Type of Medium: Electronic Resource
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