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  • Analytical Chemistry and Spectroscopy  (1)
  • Key words Site-directed mutagenesis  (1)
  • 1
    ISSN: 1432-1327
    Keywords: Key words Site-directed mutagenesis ; Iron-sulfur ; Ligand exchange ; Cluster conversion
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract  Cysteine is the ubiquitous ligand of iron-sulfur clusters in proteins, although chemical models have indicated that functional groups other than thiolates can coordinate iron in iron-sulfur compounds. Only a small number of naturally occurring examples of hydroxyl, histidinyl or carboxyl coordination have been clearly established but many others are suspected. Quite a few site-directed mutagenesis experiments have been aimed at replacing the cysteine ligands of iron-sulfur centers by other amino acids in various systems. The available data set shows that substituting one ligand, even by another functional residue, is very often destabilizing enough to impair cluster assembly; in some cases, the apoprotein cannot even be detected. One for one replacements have been demonstrated, but they have been so far almost exclusively confined to clusters with no more than one or two iron atoms. In contrast, changes of the cluster nuclearity or recruitment of free cysteine residues seem preferred ways for proteins containing larger clusters to cope with removal of a ligand, rather than using coordinating amino acids bearing different chemical functions. Furthermore, the possibility of replacing cysteines by other residues as ligands in iron-sulfur proteins does not uniquely depend on the ability of the cluster to accept other kinds of coordination than cysteinate; other factors such as the local flexibility of the polypeptide chain, the accessibility of the solvent and the electronic distribution on the active centers may also play a prominent role.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 0749-1581
    Keywords: 1H 2D NMR ; Ferredoxins ; Iron-Sulphur Redox protein ; Clostridium ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A 1H 2D NMR investigation of the oxidized 2[4Fe-4S] ferredoxins from Clostridium pasteurianum and C. acidurici was carried out. Sequential assignments through standard HOHAHA and NOESY procedures were obtained for the 2-7, 23-36 and 52-55 sequence segments of both proteins. Additional assignments of the 15-17 and 44-46 segments, linking the clusters, and of a few other residues were made by taking advantage of sequence differences between the two proteins. In summary, only the immediate vicinity of the cysteine ligands could not be identified by the procedure. In these small 2[4Fe-4S] ferredoxins, a large proportion of the resonances is sensitive to the presence of the paramagnetic centres and does not easily display NOE correlations. Nevertheless, long-range NOE peaks that could be observed shed light on the solution structure of these proteins. The close interaction between the N- and C-termini, previously evidenced by x-ray crystallography, was confirmed for both proteins in solution. Small differences between the ferredoxins from C. pasteurianum and C. acidurici were detected in the flexible and variable external 25-30 loop and also in the region separating the clusters. These differences may correlate with small dissimilarities previously observed between some properties of these ferredoxins.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
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