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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 96 (1997), S. 141-145 
    ISSN: 1432-2234
    Keywords: Key words: Nitrogenase ; Nitrogen fixation ; FeMo enzymes ; Oxidation reduction of FeMo cofactor ; INDO
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract. Reduced and oxidized forms of the FeMo- cofactor of Azotobacter vinelandii nitrogenase are examined theoretically within the intermediate neglect of differential overlap model. The results obtained favor one of the experimentally suggested modes of contraction of the metal system which results in an expansion of the central cavity of the cofactor. The bond index analysis indicates marked changes in the Mo coordination upon electron addition which may contribute to an opening of the Mo atom as a possible binding site at the advanced stages of the reduction process. In this work we also compare the 39- and 41-electron [MoFe7] core as possible native resting states, both compatible with known spin and Mössbauer spectroscopies.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Chemistry - A European Journal 2 (1996), S. 83-87 
    ISSN: 0947-6539
    Keywords: enzyme models ; iron complexes ; molybdenum complexes ; nitro genase ; semi-empirical calculations ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A model for the active site of nitrogenase is suggested and examined by means of the intermediate neglect of differential overlap (INDO) quantum mechanical method. The initial steps of the nitrogen fixation process are discussed within the framework of the present model, and it is shown that of several binding sites, initial location of the nitrogen molecule inside the MoFe cofactor is favored. Possible pathways for electron and proton delivery to the active site are also suggested on the basis of electrostatic potential calculations.
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 691-691 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 70 (1998), S. 3-40 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 70 (1998), S. 1159-1168 
    ISSN: 0020-7608
    Keywords: nitrogenase ; nitrogen fixation ; INDO ; DFT ; PM3tm ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We follow the initial activation of the nitrogen molecule at the FeMo cofactor of nitrogenase and subsequently model the hydrogenation of N2 up to the fourth protonation step using the intermediate neglect of differential overlap quantum-chemical model. The results obtained favor a reaction mechanism going through hydrazido intermediates on the 4-Fe surfaces, externally to the FeMo cofactor. Calculations using density functional theory on smaller model systems also support the suggested mechanism over other possible schemes that involve early release of the first molecule of ammonia as a product of the enzymatic reaction. We also demonstrate that dielectric stabilization due to the protein around the cofactor could lower markedly the barrier for the product release as an ammonium ion.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1159-1168, 1998
    Additional Material: 10 Ill.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 63 (1997), S. 781-795 
    ISSN: 0020-7608
    Keywords: ferredoxins ; ROHF ; UHF ; Hartree-Fock theory ; spin-projection ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We examine the electronic structure and spectrosopy of [Fe2S2(SH)4]2-, a simple model for ferredoxins, utilizing unrestricted Hartree-Fock (UHF), projected unrestricted Hartree-Fock (PUHF), restricted open-shell Hartee-Fock (ROHF) with configuration interation (CI), and configuration averaged Hartree-Fock (CAHF)-CI procedures. Our lowest-energy calculation, PUHF, predicts a ground state which is diamagnetic (antiferromagnetic) in agreement with experiment, with a calculated Heisenberg exchange splitting value JH of -161 cm-1 and a Mössbauer quadrupole splitting constant (ΔEQ) of 1.04 mm/s, in reasonable agreement with experimental observations that these compounds are diamagnetic with JH values of between -54 and -183 cm-1 and ΔEQ values of 0.72 mm/s. Although the PUHF model gives the most systematic results for the ground state, ROHF-CI calculations using localized orbitals are also quite good. The use of delocalized ROHF orbitals gives a strong bias to the high-spin 11-tet (ferromagnetic) situation, which is very difficult to correct through CI. CAHF-CI calculations that recognize the local nature of the d-orbitals also yield results in good agreement with experiment and are simple to perform. We tried to calculate the charge-transfer spectrum of these complexes assuming a diamagnetic ground state and found this difficult to do for any reasonably sized CI. Rather, we used a perturbative approach which allows the calculation of the low-spin case from the far simpler high-spin calculation. Using this, our estimated charge transfer is, on average, calculated 1600 cm-1 too high in energy when compared to experiment. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 781-795, 1997
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 65 (1997), S. 877-884 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A spin-averaged Hartree-Fock (SAHF) procedure is examined within the framework of the configuration-averaged methodology proposed earlier. The SAHF method produces reasonable total energies and can be successfully used for the calculation of electronic spectra, especially in the cases of marked energy separation between the spin states. An example is given with the spectroscopy of Mn2+ ions in the ZnS crystal where the SAHF procedure provides a more accurate interpretation of the electronic spectrum than that obtained by other self-consistent-field methods.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 877-884, 1997
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 14 (1993), S. 371-377 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: AM1 and PM3 semiempirical calculations are reported for the solvent effects on the tautomeric equilibria of 2-pyridone/2-hydroxypyridine and 4-pyridone/4-hydroxypyridine in the gas phase and solution. The solvent effects on the tautomeric equilibria were investigated by self-consistent reaction field (SCRF) theory implemented in the AMPAC and MOPAC program in two different ways: one in which all the solvent relaxation is included in the quantum mechanics and the total energy must be corrected for the solvent change in energy, method A; and a second in which the quantum mechanics directly includes this term, method B. The calculated (AM1, method A) tautomeric equilibrium constants (log K1) for 2-pyridone in the gas phase, cyclohexane, chloroform, and acetonitrile are -0.3, 0.3, 0.8, and 1.3, respectively, in good agreement with the experimental data (-0.4, 0.24, 0.78, and 2.17, respectively). For 4-pyridone/4-hydroxypyridine differences between calculated log K1 for the gas phase, chloroform and acetonitrile (-6.0, -2.6, and -1.2, respectively) and experimental data (〈 -1, 0.11, and 0.66, respectively) are larger but the experimental values are also less certain. The experimental acetonitrile data are disturbed by specific interactions. An extension of the SCRF for aqueous solutions is reviewed. © 1993 John Wiley & Sons, Inc.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Chemical Kinetics 22 (1990), S. 1189-1210 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reactions of ℓ-C3H3+ (propargylium cation) with acetylene and diacetylene have been modeled kinetically. Data were obtained from Fourier Transform Ion Cyclotron Resonance (FTICR) experiments on these systems, which are themselves models for soot particle initiation. Acetylene forms an encounter complex with ℓ-C3H3+, but, in the absence of a third body collision, the complex decomposes to acetylene and c-C3H3+ (cyclopropenylium cation) at about 1/3 the rate it decomposes to acetylene and ℓ-C3H3+, in spite of the fact that c-C3H3+ is ca. 115 kJ/mol more stable than ℓ-C3H3+. The encounter complex is long enough lived, and energetic enough, to scramble deuterium in reactions between ℓ-C3H3+ and C2D2. These reactions have been successfully modeled, yielding a nearly statistical distribution of deuterium, and a rather large kinetic isotope effect. The more complex reactions of ℓ-C3H3+ with diacetylene have also been modeled.
    Additional Material: 6 Ill.
    Type of Medium: Electronic Resource
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