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  • Biochemistry  (7)
  • Resonance theory  (3)
  • Theoretical, Physical and Computational Chemistry  (3)
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 69 (1986), S. 393-407 
    ISSN: 1432-2234
    Keywords: Valence-bond model ; π-Networks ; Heisenberg model ; Resonance theory ; Néel states ; Renormalization group ; Spin waves
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Approximate ground-state wavefunctions for valence-bond (or Heisenberg) models are obtained both within Néel-state-based and within Kekulé-state-based resonance-theoretic approaches. Comparisons are made between these and other general approaches, with particular emphasis on organic π-network systems. Attention is drawn to the manner in which the quality of the different approximation schemes changes with variations in structural characteristics of the system. It is suggested that resonance-theoretic ideas are most appropriate for (aromatic benzenoid) systems with low coordination number, whereas Néel-state based ideas are most appropriate for (3-dimensional) structures with higher coordination number (and little “frustration”).
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1432-2234
    Keywords: π-network polymers ; Valence-bond model ; Resonance theory ; Long-range order ; Bond localization ; Solitonic excitations ; Transfer matrices
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The poly-polyphenanthrene family of extended π-network strips with members ranging from polyacetylene to graphite is considered in terms of the locally correlated valence-bond or Heisenberg Hamiltonian. Resonance theory wavefunctions which provide a variational upper bound to the ground state energy are developed in a graph-theoretic formalism extendable to more general localized wavefunction cluster expansions. The graph-theoretic formalism facilitates the use of general transfer matrix techniques, which are especially powerful in application to quasi-one-dimensional systems such as are illustratively treated here. It is argued that these strips exhibit states of different long-range spin-pairing orderings. Novel properties associated with these different resulting phases are briefly indicated, including the possibilities of solitonic excitations and the reactivity at the ends of the strips. The qualitative arguments are supported by numerical calculations for strips up to width 8.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 74 (1988), S. 349-361 
    ISSN: 1432-2234
    Keywords: Resonance theory ; Conjugated circuits ; Valence-bond theory ; Graphite ; Many-body theory
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Computations for the “conjugated circuits” model which has previously only been treated for finite and quasi-one-dimensional conjugatedπ-networks are here extended to the graphite lattice. Many-body techniques give the resultant resonance energy per site as a function of a physically relevant long-range order parameter.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 63 (1997), S. 393-401 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Heteroatomic cages (BN/2NN/2) with borons and nitrogens fully replacing alternant sets of carbons in cages are built graph-theoretically and investigated via the semiempirical MNDO Hamiltonian. The comparison with their parent carbon cages CN is made in terms both of electronic and of geometric changes. Infinite classes first of octahedral symmetry and second of hexagonal-bipyramidal symmetry fullerenoid cages are considered in detail. The difference in the electronegativities for boron and nitrogen implies the opening of HOMO-LUMO gaps for alternant BN clusters. In general, the borons prefer planar geometry (sp2 hybridization) while the nitrogens prefer pyramidalization (sp3 hybridization). © 1997 John Wiley & Sons, Inc.
    Additional Material: 6 Ill.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 70 (1998), S. 205-217 
    ISSN: 0020-7608
    Keywords: potential energy surface ; transition structure ; nonrigid molecule ; symmetry group ; reaction path ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The symmetry group of a nonrigid molecule is related to that of the transition structure that is related to the rearrangement process which contributes to the “nonrigidity” of the molecular system. The resulting permutation/rotation/reflection groups for nonrigid molecules can be much larger in order than the usual Longuet-Higgins permutation/inversion group. A few examples are presented to illustrate the definition of the symmetry group for nonrigid molecules.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 205-217, 1998
    Additional Material: 6 Ill.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 65 (1997), S. 421-438 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The classical theory of chemical valence, first, is naturally formalized in mathematics in the area of graph theory and, second, finds an extension in quantum mechanics in terms of the Heitler-London-Pauling “valence-bond” (VB) theory. Thus, VB theory stands in a fairly unique position, although in quantum chemistry, there often has been a preference for the alternative (perhaps even “complementary”) molecular orbital (MO) theory, presumably in large part because of computational efficacy for general molecular structures. Indeed, as formulated by Pauling and others, VB theory was described as a configuration interaction (CI) problem when there were multiple relevant classical valence structures for the same molecular structure. Also, as now recognized, a direct assault on CI is computationally intensive, prone to size-inconsistency problems, and effectively limited to smaller systems - whereas indirect approaches, e.g., via wave-function cluster expansions or renormalization-group theory, often neatly avoid these problems. Thus, what is (and perhaps always has been) needed is “many-body” schemes for VB computations (as well as for higher-order MO-based approaches, too). Here, then, certain such many-body VB-amenable computational schemes are to be discussed, in the context of semiempirical (explicitly correlated) graphical models. The collection of models are described and interrelated in a fairly comprehensive systematic manner. A selection of many-body cluster expansion methods are then discussed with special reference to resonating VB wave functions and the fundamental graph-theoretic nature of the consequent problems (such as also are noted to arise in lattice-discretized statistical-mechanical problems, too). Some examples are described incorporating resonance among exponentially great numbers of VB structures as applied: for large icosahedral-symmetry fullerenic structures, for the (polyacetylenic) linear chain, and for ladderlike conjugated polymers. It is contended that practicable many-body VB-theoretic methods are now available, retaining clear links to classical chemical valence theory. Hopefully, too, these methods may soon find use beyond the semi-empirical framework.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 421-438, 1997
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 12 (1991), S. 1260-1264 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A powerful algorithm for calculating conjugated-circuit expectations for planar graphs is enunicated. The utility for systematizing quantitative resonance-theoretic computations on conjugated hydrocarbons, and related species, is emphasized.
    Additional Material: 1 Ill.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 16 (1995), S. 517-526 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: We consider rigorous evaluation of conjugated-circuit resonance energies for families of structurally related benzenoid hydrocarbons of increasing size. Local and global aromatic properties of such molecules are investigated with particular interest in modeling high polymers. Using the algebra of large numbers, exact formulas for contributions from individual benzene rings of polymers with up to 25,000 repeating units (close to half a million carbon atoms) were derived. All arithmetic procedures were carried out in terms of whole numbers retaining all digits, of which there were sometimes more than 105. © 1995 by John Wiley & Sons, Inc.
    Additional Material: 8 Tab.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 7 (1986), S. 443-456 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A frequently encountered problem in chemical applications is that of a weighted enumeration (or summation over) a class of extended subgraphs of a given system graph, which might represent a chemical structure. Some aspects of a powerful transfer-matrix method are described for treating such graphtheoretic weighted enumeration problems. This method is seen to be particularly amenable for system graphs which are long in one direction and narrow in transverse directions. When the system graph is uniform (i.e., translationally symmetric) along one extended direction, asymptotic results can be readily extracted.A second point of emphasis here is that the weighted enumeration problems of the type studied here naturally arise in computing matrix elements over cluster expanded wave functions, though most applications so far framed in the literature differ from this. Size consistency and size-extensivity aspects of this application are noted in terms of the transfer-matrix approach.Polypyrene fusene strips of varying lengths are considered as applications of the transfer-matrix methods for two weighted enumeration problems. Different graph-theoretic problems are noted to arise for low-order cluster expanded wave functions, such as in fact occur in both the Herndon-Simpson and the Pauling-Wheland resonance theories. For higher-order wave function ansätze the graph-theoretic problems would simply have more complicated weights and transfer matrices, which for the present examples are very small (i.e., 2 by 2 and 3 by 3).
    Additional Material: 12 Ill.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 12 (1991), S. 1243-1251 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A chemically and graph-theoretically relevant problem is that of determining whether a pair of graphs G and G′ are isomorphic. A two-stage computational test is developed. In the first stage an “eigenvalue-eigenprojector” tabular graph-theoretic invariant is computed, whence if the two tables differ, G and G′ must be nonisomorphic. The second stage, utilizing the tables of the first stage, orders the vertices, thereby leading to a special labeling for them, whence if the associated adjacency matrices for G and G′ are equal, it must be that G and G′ are isomorphic. The computational implementation, and testing of the algorithm is described.
    Additional Material: 10 Ill.
    Type of Medium: Electronic Resource
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