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  • Biochemistry and Biotechnology  (1)
  • Mobility  (1)
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Journal of biomolecular NMR 1 (1991), S. 457-471 
    ISSN: 1573-5001
    Keywords: Chemical shift ; NOE ; Protein structure ; Mobility ; Pseudocontact shift ; Cytochromeb 5 ; Cytochromec
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Summary An increasing number of protein solution structures, calculated on the basis of nuclear Overhauser enhancement cross-peak intensities observed in two- or higher dimensional NOESY experiments, are becoming available. Among these structures regions of uncertainty are frequently observed particularly with respect to loops and surface side chains. These are commonly ascribed to either a lack of NOE constraints or to some intrinsic mobility within the protein. A powerful method of structural analysis which may resolve this problem is based on the information content of the chemical shift. The value of such an analysis is illustrated here with cytochromes bs andc, proteins for which high-quality crystallographic and NMR data are available. Comparison of these using a pseudocontact shift-based analysis indicates that NOE data should be combined with the chemical shift data in order to uncover fully the ensemble of protein states and their dynamics in solution.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Proteins: Structure, Function, and Genetics 10 (1991), S. 22-32 
    ISSN: 0887-3585
    Keywords: distance geometry ; DISHAN ; DISGEO ; protein structure ; NMR ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: When calculating three-dimensional structures from NMR data, alternative solutions with very large RMS deviation can be obtained. Sometimes local or global inversions of the protein folding can be observed. We call these different solutions topological mirror images, as they keep the correct amino acid chirality. They are observed when the number of restraints is insufficient and represent different solutions from the same scalar information. Therefore they are common in small peptides where the NMR data are often limited and the secondary structure is not very well defined. They can also be observed in large molecules in regions of higher flexibility. In our experience the observation of topological mirror images is independent of the efficiency of sampling of the algorithm used. We present four examples of proteins with different size and folding. We also discuss ways to distinguish among the different solutions.
    Additional Material: 7 Ill.
    Type of Medium: Electronic Resource
    Library Location Call Number Volume/Issue/Year Availability
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