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  • 1
    Electronic Resource
    Electronic Resource
    Synthesis and conformational analysis of N-glycopeptides. II. CD, molecular dynamics, and nmr spectroscopic studies on linear N-glycopeptidesAbbreviations for dipeptides. Boc-Pro-Asn (Ac3GlcNHAc)-NHCH3: N4-3,4,6-tri-O-acetyl-2-acetamido-2-deoxy-β-D-glucopyranosyl-N2 - (tert-butyloxycarbonyl-L-prolyl) - asparagine-N-methylamide; Boc-Pro-Asn (GlcNHAc)-NHCH3: N4 - 2-acet-amido-2-deoxy-β-D-glucopyranosyl-N2 - (tert-butyloxycarbonyl L - prolyl) - asparagine - N - methylamide; Boc - Val - Asn (Ac-GlcNHAc) - NHCH3: N4-3,4,6-tri-O-acetyl-2-acetamido-2-deoxy-β-D-glucopyranosyl-N2 - (tert-butyloxycarbonyl-L-valyl) - aspar-agine-N-methylamide; Boc-Val-Asn (GlcNHAc) - NHCH3: N4 - 2-acetamido-2-deoxy-β-D-glucopyranosyl-N2 - (tert-butyloxycarbonyl-L-valyl) - asparagine-N-methylamide; Boc-Pro-Gln - (Ac3-GIcNHAc) - NHCH3: N5-3,4,6-tri-O-acetyl-2-acetamido-2-deoxy-β-D-glucopyranosyl-N2 - (tert -butyloxycarbonyl-L-prolyl) - gluta-mine-N′-methylamide; Boc-Pro-Gln (GlcNHAc)-NHCH3: N5-(2-acetamido -2-deoxy-β-D-glucopyranosyl)-N2- (tert-butyloxycar-bonyl -L-vrolyl) - glutamine - N-methylamide; Boc-Val Gln (GlcNHAc) -NHCH3: N5-3,4,6-tri-O-acetyl-2-acetamido-2-deoxy-β- D -glucopyranosyl-N2- (tertbutyloxycarbcnyl-L-valyl) - glutamine-N-methylamide; Boc-Val-Gln (GlcNHAc) - NHCH3: N5 - (2-acetamido-2-deoxy-β-D-glucopyranosyl)-N2 - (tert-butyloxycarbonyl-L-valy)-glutamine-N-methylamid; Ac3-NHAc-GlcNHAc: N-acetyl-3,4,6-tri-O-acetyl-2-acetaraido-2-deoxy-β-D-glucopyranosylamine; NHAcGlcNHAc: N-acetyl-2-acetamido-2-deoxy-β-D-glucopyranosylamine. (1993)
    New York : Wiley-Blackwell
    Biopolymers 33 (1993), S. 665-685 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The comprehensive structural analysis reported herein of eight N-glycopeptides, in three different solvents, is based on quantitative CD experiments, homonuclear nuclear Overhauser effect measurements, and molecular dynamics (MD) calculations. Although several orientations of the two amide planes attached to the carbohydrate pyranose ring are possible, according to NOE, CD data, and MD simulations, of all of the glycopeptide models, regardless of the type of the carrier peptide, only one dominant conformer population was found. This conformer is characterized by a nearly trans orientation of the CH and NH hydrogens of both acetamido groups. This finding is in perfect agreement with x-ray crystallographic data on the solid state conformation of the 1-N-acetyl- and 1-N-(β-aspartoyl)-2-acetamido-2-deoxy-β-D-glucopyranosylamine. The precise identification of this dominant conformer of N-glycopeptides in solution was the major question addressed herein by the structural analyses. A “CD additivity” experiment was carried out using an equimolar solution of Boc-Pro-Asp-NHCH3 and l-N-acetyl-3,4,6-tri-O-acetyl-2-acetamido-2-deoxy-β-D-gluco-pyranosylamine at ambient temperature in acetonitrile. The CD spectrum obtained from the equimolar solution of the above two molecules (the “spectroscopic sum”) was identical with the CD curve obtained from the algebraic summation of the individually recorded CD spectra of the peptide and the carbohydrate moiety (“mathematical sum”).The global picture of the CD spectral analyses of the eight parent peptides with the eight N-glycopeptides revealed that in trifluoroethanol and acetonitrile, the side-chain modification of the Asn models (natural N-glycopeptide analogues) by N-glycosylation has a significant effect on the conformation of the carrier peptide, resulting in a decrease in the original type I β-turn content. Simultaneously, the type II β-turn conformational percentage increased to ≈ 20%. Such a conformational ratio change seems to be larger than the expected errors arising from the CD analyses, and agrees with the results of MD calculations. N-glycosylation of Asn residues causes perturbations, not only through the covalent bond, but also through specific hydrogen bonds between the backbone and side chain atoms. CD spectroscopy, augmented by efficient CD curve deconvolution techniques, has proved to be a useful tool for studying multicomponent conformer mixtures of small linear peptides in solution and changes of conformational equilibria caused by N-glycosylation. © 1993 John Wiley & Sons, Inc.
    Additional Material: 9 Ill.
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  • 2
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Enantioselectivity of acetylation by vinyl acetate/AcOEt catalyzed by immobilized Candida antarctica lipase (Novozym 435) is studied for rac-3-(hydroxymethyl)-1,4-benzodiazepin-2-ones 7, 9, 14 (n = 1; number of CH2 groups in the chain at C(3)), 20 (n = 2), and for prochiral 3,3-bis(hydroxymethyl) derivative 16. Enantiomeric excess (ee [%]) is correlated with conformational properties of substrates (relative conformation, energy difference between two boat-like ground-state conformations, ring-inversion barrier) as determined by DNMR and MM2 calculations. (3S)-Enantiomers of acetates (+)-8, (+)-10, (+)-15, and (+)-21 were preferentially formed. In the case of the acetate (-)-17 (ee 90.2%), formation of the (3R)-enantiomer was favored. C(3)—OH Group with hemiaminal-like character in rac-3 (n = 0) cannot be acetylated by any of 23 tested lipases and four esterases. For racemic alcohols 7, 9, 14, and 20, preferred acetylationof the (3S)-enantiomers, present in solution in absolute (M)-conformation, was established; only in prochiral diol 16 (n = 1) the CH2OH group in the (pro-R)-position is prevalently acetylated, presumably due to the binding to the enzyme, in absolute (P)-conformation. Temperature dependence of enantioselectivity revealed inverse correlation of the E value of rac-9, and ee values for prochiral 16, with T[K], indicating prevalent contribution of the enthalpy term to enantioselection. Absolute conformation (M/P) and absolute configuration at C(3) of all products was determined by combining CD and 1H-NMR data.
    Additional Material: 5 Ill.
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  • 3
    ISSN: 0899-0042
    Keywords: circular dishroism (CD) study ; exciton coupling ; azastilbene chromophore ; absolute conformation of coupled chromophores ; Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: CD study of the chiral enamines 4-9 revealed the presence of the azastil-bene-like chromophore, and exciton coupling between this chromophore (A) and aromatic chromophore B. Coupled excitons in 5 and 8 suggest M (-) absolute conformation between chromophores A and B. © 1996 Wiley-Liss, Inc.
    Additional Material: 2 Ill.
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  • 4
    ISSN: 0899-0042
    Keywords: circular dichroism (CD) ; chiral crown ethers ; enantiomeric recognition ; heterochiral complexing ; Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: CD studies were performed on the enantiomeric recognition of chiral aralkyl ammonium salts 1-3 by chiral pyridino-18-crown-6 ligands 4 and 6. Heterochiral complexing was found to result in larger spectral effects in both the 1Lb and 1La band regions of the chiral crown ethers. Based on the results reported herein, CD spectroscopy can be an efficient tool for discriminating between enantiomeric chiral aralkyl ammonium salts and determining the stoichiometry and relative stability of their complexes with chiral pyridino-18-crown-6 ligands. Chirality 9:545-549, 1997. © 1997 Wiley-Liss, Inc.
    Additional Material: 6 Ill.
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  • 5
    ISSN: 0899-0042
    Keywords: asymmetric induction ; stereoselective reduction ; syn/anti diasteroselectivity ; circular dichroism (CD) ; coupled chromophores ; Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Depending on the reducing agent and reaction conditions, diastereoselective reduction of 3-[3-(4′-bromo[1,1′-biphenyl]-4-yl)-3-keto-1-phenylpropyl]-4-hydroxy-2H-1-benzopyran-2-one (2) proceeds with different stereoselectivity; a surprisingly high, approximately 90% d.e. of 4A is achieved with NaBH4 in MeOH at low temperature. Resulting diastereomeric racemates 4A and 4B are separated and their respective syn and anti configurations are assigned on the bases of mechanic considerations, supported by the 1H-NMR spectra and conformational analysis based on MM2 calculations. The syn diastereomer 7A, 4-OMe derivative of 4A, was partially resolved by acylation at C(3)-OH with S-(-)-camphanic acid to camphanyl ester 12 of (-)-7A, leaving (+)-enantiomer 7A. The assignment of absolute 1R,3S-configuration to (-)-7A is based on comparison of its CD spectrum with those of the model compounds S-14 and R-15, which represent partial chromophores 4-hydroxy-2H-1-benzopyran-2-one (4-hydroxycoumarin) A, and 4′-bromo-1,1′-biphenyl B; their exciton coupling in (-)-7A is suggested. Chirality 9:512-522, 1997. © 1997 Wiley-Liss, Inc.
    Additional Material: 9 Ill.
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  • 6
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Aluminium has been recognized to be a neurotoxic agent and a risk factor in Alzheimer's disease and other neuronal dysfunctions. CD spectroscopic studies on two synthetic fragments of the human neurofilament protein midsized subunit (NF-M), and their alanine-for-serine-substituled and /or serine-phosphorylated derivatives showed the formation of stable, citric acid resistant complexes of Al3+with peptide ligands [M. Hollósi, Z.M. Shen, A. Perczel, and G.D. Fasman (1994) Proc. Natl. Acad. Sci. USA, vol. 9, pp.4902-4906]. In the case of Ser-phosphorylated fragments, aβ-sheet inducing effect of Ca2+ and Al3+ ions was observed. However, the serine-containing parent peptides, NF-M 13 (KSPVPKSPVEEKG) and NF-M 17 (EEKGKSPVPKSPVEEKG), failed to show CD spectral changes reflecting β-sheet formation upon addition of Al3+ ions. On the basis of the amide I region of the Fourier transform ir spectra, in triftuoroethanol, the peptide backbone of NF-M17 and NF-M17 (A6A11) shows marked changes in the presence ofAl3+. The most significant spectral differences are seen in the car-boxyl region (〉 1700 cm-l). The high-frequency component bands above 1760 cm-1 in both spectra belong to the C= O of undissociated CF3COOH. Another strong band at 1710 cm-1 which appears only in the spectrum of NF-Ml 7 (A6A11)(NF-M17 with Ser6 andSer11 replaced by Ala) can be assigned to the side chain or C-terminal COOH groups. The differential proton-ation state of the carboxyl groups in the two peptides suggests the format ion ofAl3+ complexes of different structure and stability. The Al3+ complex ofNF-Ml 7 (A6A11) is likely less stable, or one or more of the carboxylates are not coordinated to the Al3+ and thus can serve as a base to bind the liberated protons. In NF-M17 the OH groups of serines facilitate the formation of type [Al-pep(H-1)] complexes with the involvement of all carboxylategroups in the molecule. The relevance of intramolecular and intermolecular Al3+ binding to the controversial biological role of aluminium is also discussed. © 1995 John Wiley & Sons, Inc.
    Additional Material: 2 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Peptide Science 4 (1998), S. 300-304 
    ISSN: 1075-2617
    Keywords: Cryochemistry ; frozen organic solution ; peptide coupling ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The freezing effect on peptide coupling in organic solutions of different polarity has been investigated and compared with the results obtained in liquid phase. The model reaction of DCC-activated coupling of Boc-Ala-Phe-OH with H-Ala-OBut has been carried out in dioxane, dimethylsulfoxide and formamide, as well as in mixtures (90%/10%, v/v) of dioxane with acetonitrile, dimethylformamide, dimethylsulfoxide and formamide.The reactions have been traced and evaluated by RP-HPLC analysis. Freezing the reaction mixture resulted in all cases in a significant suppression of the N-dipeptidylurea side-product formation together with a slight decrease of tripeptide epimerization. The coupling yields and the side effects depended on the solvent, with the dioxane and dioxane/acetonitrile mixture produced the best results. The role of freezing and solvent in the improved results is discussed. © 1998 European Peptide Society and John Wiley & Sons, Ltd.
    Additional Material: 1 Ill.
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  • 8
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Modified sequences of the amyloid peptide βA (1-42) and its shorter Phe-sulfonic acid derivatives with enhanced solubility in aqueous solutions were synthesized, and the conformational consequences were studied by comparative circular dichroism and Fourier transform infrared spectroscopy. Measurements were performed in trifluoroethanol/water mixtures and aqueous octyl-glucoside solutions. Replacement of the hydrophobic amino acids by less hydrophobic and hydrophilic residues resulted in a predominantly random conformation of the modified amyloid peptides in water, while βA (1-42) exhibited 55% β-sheet structure. In the helix-promoting solvent trifluoroethanol the completely dissolved peptides are present mostly in an α-helical conformation. In octyl glucoside solution - at and above the critical micelle concentration - βA (1-42) has higher β-sheet content (82%), contrary to the more hydrophilic modified peptides which retain a predominant random conformation irrespective of the absence or presence of the micelles. Our data suggest that the amide groups of the backbone and/or the polar side-chain functions of βA (1-42) interact with the glucose surface of micelles possibly mainly by H-bonds creating a β-sheet forming core which then facilitates intersheet stacking. The modified peptides do not bind to the surface of micelles or their binding has no β-ordering effect on the peptide chains. © 1996 John Wiley & Sons, Inc.
    Additional Material: 6 Ill.
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  • 9
    ISSN: 0170-2041
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Components of the Green deathcap Mushroom (Amanita phalloides), LXI. - δ-Aminophallion, a 7-Analogue of Phalloidin, and Some Biochemically Useful, Including Fluorescent DerivativesThe tosyloxy group of Oδ7-tosylphalloidin (1b) obtained by tosylation of the primary alcohol function of the γ,δ-dihydroxyleucine side chain (amino acid no. 7) of phalloidin (1a) is replaced by ammonia, aniline, p-hexyloxyaniline, or 4′-aminofluorescein. From δ-aminophalloin (1c) 12 new derivatives [1h-q and the bis(phallotoxins) 2a,b] are prepared. The fluorescent phalloidins 1p,q are valuable stains for visualization of F-actin. Toxicities and RF values of the phallotoxin derivatives are indicated in Table 1.
    Notes: Der Tosyloxyrest des durch Tosylierung der primären Alkoholfunktion der γ,δ-Dihydroxyleucinseitenkette (Aminosäure 7) des Phalloidins (1a) erhaltenen Oδ7-Tosylphalloidins (1b) wird durch Ammoniak, Anilin, p-Hexyloxyanilin und 4′-Aminofluorescein ersetzt. δ-Aminophalloin (1c) dient als Ausgangssubstanz für 12 weitere Aminoderivate 1h-q sowie die Bis(phallotoxine) 2a, b. Die fluoreszierenden Phalloidinderivate 1p,q sind zur spezifischen Anfärbung von F-Aktin sehr gut geeignet. Toxizitäten und RF-Werte der Aminoderivate werden in Tab. 1 angegeben.
    Additional Material: 1 Tab.
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  • 10
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Liebigs Annalen 1974 (1974), S. 1596-1604 
    ISSN: 0075-4617
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Peptide Syntheses, LVIII1). - Syntheses of Cyclopeptides Consisting of Glycine and Two Pairs of ProlineIn order to study the conformations, the complexing ability for sodium ions, and the antitoxic action of cyclopeptides, which contain - like antamanide - two pairs of proline residues, the simplified cyclopeptides 2a-e containing only glycine besides proline were synthesized.
    Notes: Um die Konformation, das Komplexbildungsvermögen mit Natriumionen und die vor Phallotoxinen schützende Wirkung von Cyclopeptiden zu studieren, die - wie das natürliche Antitoxin Antamanid - 2 Paare von Prolinresten enthalten, wurden die vereinfachten, außer Prolin nur Glycin enthaltenden Cyclopeptide 2a-e mit 6-10 Aminosäureresten synthetisiert.
    Additional Material: 1 Tab.
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