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  • 1
    ISSN: 1573-5028
    Keywords: Arabidopsis ; low-temperature-induced genes ; developmental regulation ; osmolarity ; promoter ; transgenic
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The ability of most higher plants to withstand freezing can be enhanced by cold acclimation, although the freezing tolerance of plant tissues is also affected by their developmental stage. In addition, low temperature has pleiotropic effects on many plant developmental processes such as vernalization. The interaction between plant development and low temperature implies that some genes are regulated by both environmental factors and developmental cues. Although a number of cold-inducible genes from plants have been identified, information concerning their regulation during plant development is limited. In order to understand their developmental regulation and obtain possible clues as to function, the promoters of kin1 and cor6.6, two cold- and abscisic acid (ABA)-regulated genes from Arabidopsis thaliana, were fused to the β-glucuronidase (GUS)-coding sequence and the resulting constructs were used to transform tobacco and A. thaliana. Transgenic plants with either the kin1 or cor6.6 promoter showed strong GUS expression in pollen, developing seeds, trichomes and, most interestingly, in guard cells. During pollen development, maximum GUS activity was found in mature pollen. In contrast, the maximum GUS activity during seed development was during early embryogenesis. These patterns of expression distinguish kin1 and cor6.6 from related lea genes which are strongly expressed during late embryogenesis. There was no major qualitative difference in patterns of GUS expression between kin1 and cor6.6 promoters and the results were similar for transgenic tobacco and Arabidopsis. Considering the results described, as well as those in an accompanying paper Wang et al., 1995, Plant Mol Biol 28: 605–617 (this issue), we suggest that osmotic potential might be a major factor in regulating the expression of kin1 and cor6.6 during several developmental processes. The implication of the results for possible function of the gene products is discussed.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1573-5028
    Keywords: abscisic acid ; Arabidopsis ; cold acclimation ; low temperature-induced genes ; promoter ; transgenic
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The Arabidopsis thaliana genes kin1 and cor6.6 belong to the same family and were expressed at higher levels following low temperature and ABA treatments. In an attempt to elucidate the mechanism of gene regulation by low temperature, the relationship between low-temperature- and abscisic acid (ABA)-induced gene expression and possible differential expression of the two genes, we have cloned a 5.3 kb genomic fragment harboring kin1 and cor6.6 and their respective 5′ sequences. The putative promoters of both genes were fused to the β-glucuronidase (GUS) coding sequence and GUS expression was analysed in transgenic tobacco and Arabidopsis plants. The cor6.6 promoter produced a higher basal level of expression than the kin1 promoter in transgenic tobacco. Enzyme assays of inducible GUS activity in transgenic Arabidopsis and tobacco plants showed that GUS activity directed by both kin1 and cor6.6 promoters was significantly induced by ABA, dehydration and osmoticum, but not by low temperature. Northern analysis revealed, in contrast, that GUS mRNA was significantly induced in these transgenic plants by low temperature. Further analysis showed that, at low temperature, GUS protein synthesis from the induced GUS mRNA was inhibited. Together these results reveal induction of kin1 and cor6.6 transcription by low temperature, exogenous ABA and dehydration. However, low-temperature expression is dramatically reduced at the translational level.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Numerical Methods for Partial Differential Equations 11 (1995), S. 1-31 
    ISSN: 0749-159X
    Keywords: Mathematics and Statistics ; Numerical Methods
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics
    Notes: Eulerian-Langrangian localized adjoint methods (ELLAM) were developed to solve convection-diffusion-reaction equations governing contaminant transport in groundwater flowing through a porous medium, subject to various combinations of boundary conditions. In this article, we prove optimal-order error estimates and some superconvergence results for the ELLAM schemes. In contrast to many existing estimates for a variety of numerical methods, which often contain the temporal derivatives of the exact solution, our error estimates contain the total derivatives of the exact solution but do not involve any temporal derivatives of the exact solution. © 1995 John Wiley & Sons, Inc.
    Additional Material: 1 Ill.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 0749-159X
    Keywords: Mathematics and Statistics ; Numerical Methods
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics
    Notes: The microbial degradation of organic contaminants in the subsurface holds significant potential as a mechanism for in-situ remediation strategies. The mathematical models that describe contaminant transport with biodegradation involve a set of advective-diffusive-reactive transport equations. These equations are coupled through the nonlinear reaction terms, which may involve reactions with all of the species and are themselves coupled to growth equations for the subsurface bacterial populations. In this article, we develop Eulerian-Lagrangian localized adjoint methods (ELLAM) to solve these transport equations. ELLAM are formulated to systematically adapt to the changing features of governing partial differential equations. The relative importance of retardation, advection, diffusion, and reaction is directly incorporated into the numerical method by judicious choice of the test functions that appear in the weak form of the governing equation. Different ELLAM schemes for linear variable-coefficient advective-diffusive-reactive transport equations are developed based on different operator splittings. Specific linearization techniques are discussed and are combined with the ELLAM schemes to solve the nonlinear, multispecies transport equations. © 1995 John Wiley & Sons, Inc.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Numerical Methods for Partial Differential Equations 13 (1997), S. 617-661 
    ISSN: 0749-159X
    Keywords: characteristic methods ; Eulerian-Langrangian methods ; numerical solution of first-order hyperbolic equations ; Runge-Kutta methods ; Mathematics and Statistics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics
    Notes: We develop two Runge-Kutta characteristic methods for the solution of the initial-boundary value problems for first-order linear hyperbolic equations. One of the methods is based on a backtracking of the characteristics, while the other is based on forward tracking. The derived schemes naturally incorporate inflow boundary conditions into their formulations and do not need any artificial outflow boundary condition. They are fully mass conservative and can be viewed as higher-order time integration schemes improved over the ELLAM (Eulerian-Lagrangian localized adjoint method) method developed previously. Moreover, they have regularly structured, well-conditioned, symmetric, and positive-definite coefficient matrices. Extensive numerical results are presented to compare the performance of these methods with many well studied and widely used methods, including the Petrov-Galerkin methods, the streamline diffusion methods, the continuous and discontinuous Galerkin methods, the MUSCL, and the ENO schemes. The numerical experiments also verify the optimal-order convergence rates of the Runge-Kutta methods developed in this article. © 1997 John Wiley & Sons, Inc. Numer Methods Partial Differential Eq 13: 617-661, 1997
    Additional Material: 27 Ill.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Numerical Methods for Partial Differential Equations 14 (1998), S. 739-780 
    ISSN: 0749-159X
    Keywords: advection-diffusion-reaction transport equations ; characteristic methods ; error estimates ; Eulerian-Lagrangian methods ; Mathematics and Statistics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics
    Notes: A family of ELLAM (Eulerian-Lagrangian localized adjoint method) schemes is developed and analyzed for linear advection-diffusion-reaction transport partial differential equations with any combination of inflow and outflow Dirichlet, Neumann, or flux boundary conditions. The formulation uses space-time finite elements, with edges oriented along Lagrangian flow paths, in a time-stepping procedure, where space-time test functions are chosen to satisfy a local adjoint condition. This allows Eulerian-Lagrangian concepts to be applied in a systematic mass-conservative manner, yielding numerical schemes defined at each discrete time level. Optimal-order error estimates and superconvergence results are derived. Numerical experiments are performed to verify the theoretical estimates. © 1998 John Wiley & Sons, Inc. Numer Methods Partial Differential Eq 14: 739-780, 1998
    Additional Material: 2 Tab.
    Type of Medium: Electronic Resource
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