ISSN:
0192-8651
Keywords:
carbohydrates
;
hexopyranoses
;
conformational analysis
;
ab initio
;
force field
;
Chemistry
;
Theoretical, Physical and Computational Chemistry
Source:
Wiley InterScience Backfile Collection 1832-2000
Topics:
Chemistry and Pharmacology
,
Computer Science
Notes:
The OPLS all-atom (AA) force field for organic and biomolecular systems has been expanded to include carbohydrates. Starting with reported nonbonded parameters of alcohols, ethers, and diols, torsional parameters were fit to reproduce results from ab initio calculations on the hexopyranoses, α,β-D-glucopyranose, α,β-D-mannopyranose, α,β-D-galactopyranose, methyl α,β-D-glucopyranoside, and methyl α,β-D-mannopyranoside. In all, geometry optimizations were carried out for 144 conformers at the restricted Hartree-Fock (RHF)/6-31G* level. For the conformers with a relative energy within 3 kcal/mol of the global minima, the effects of electron correlation and basis-set extension were considered by performing single-point calculations with density functional theory at the B3LYP/6-311+G** level. The torsional parameters for the OPLS-AA force field were parameterized to reproduce the energies and structures of these 44 conformers. The resultant force field reproduces the ab initio calculated energies with an average unsigned error of 0.41 kcal/mol. The α/β ratios as well as the relative energies between the isomeric hexopyranoses are in good accord with the ab initio results. The predictive abilities of the force field were also tested against RHF/6-31G* results for D-allopyranose with excellent success; a surprising discovery is that the lowest energy conformer of D-allopyranose is a β anomer. © 1997 John Wiley & Sons, Inc. J Comput Chem 18: 1955-1970, 1997
Additional Material:
9 Ill.
Type of Medium:
Electronic Resource
Permalink
