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  • 1
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 104 (1996), S. 3048-3057 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Monte Carlo simulations have been used to study three different models for linear, titrating polyelectrolytes in a salt-free environment: (i) a rigid polymer with rigid bonds (rigid rod); (ii) a flexible polymer with rigid bonds; and (iii) a flexible polymer with flexible bonds. The use of a very efficient pivot algorithm has made it possible to simulate very long chains, with up to several thousand titrating groups. The results have been compared to a mean field approximation for a rigid rod and variational results emanating from a Flory type approach. It is found that the rigid rod mean field model gives a qualitatively correct description for the apparent dissociation constant for all three models. At room temperature, the energy contribution to the apparent dissociation constant often dominates over the entropic term, which partly explains the relative success of this approach. In the case of flexible bonds, both the conformational behavior and the behavior of the apparent dissociation constant are well described by a variational ansatz with a quadratic term, largely thanks to the harmonicity of the bonds themselves. The approach is less successful for rigid bonds, which becomes evident for highly charged chains where a harmonic entropy term is incorrect. This can be remedied by replacing it with an expression valid in the strong coupling regime. Empirical scaling expressions have also been found, primarily for the end-to-end distance. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 99 (1995), S. 1251-1266 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 105 (1996), S. 5233-5241 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We consider the thermodynamics of a uniformly charged polyelectrolyte with harmonic bonds. For such a system there is at high temperatures an approximate scaling of global properties like the end-to-end distance and the interaction energy with the chain length divided by the temperature. This scaling is broken at low temperatures by the ultraviolet divergence of the Coulomb potential. By introducing a renormalization of the strength of the nearest-neighbor interaction the scaling is restored, making possible an efficient blocking method for emulating very large polyelectrolytes using small systems. The high temperature behavior is well reproduced by the analytical high-T expansions even for fairly low temperatures and system sizes. In addition, results from low-T expansions, where the coefficients have been computed numerically, are presented. These results approximate well the corresponding Monte Carlo results at realistic temperatures. A corresponding analysis of screened chains is performed. The situation here is complicated by the appearance of an additional parameter, the screening length. A window is found in parameter space, where scaling holds for conformational as well as thermodynamical properties. This window corresponds to situations where the range of the potential interpolates between the bond length and the size of the chain. This scaling behavior, which is verified by Monte Carlo results, is, for the end-to-end distance, consistent with Flory scaling. Also for the screened chain a blocking approach can be devised, that performs well for low temperatures, whereas the low-T expansion is inaccurate at realistic temperatures. ©1996 American Institute of Physics
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 107 (1997), S. 273-282 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The thermodynamic behavior of a three-dimensional off-lattice model for protein folding is probed. The model has only two types of residues, hydrophobic and hydrophilic. In absence of local interactions, native structure formation does not occur for the temperatures considered. By including sequence independent local interactions, which qualitatively reproduce local properties of functional proteins, the dominance of a native state for many sequences is observed. As in lattice model approaches, folding takes place by gradual compactification, followed by a sequence dependent folding transition. Our results differ from lattice approaches in that bimodal energy distributions are not observed and that high folding temperatures are accompanied by relatively low temperatures for the peak of the specific heat. Also, in contrast to earlier studies using lattice models, our results convincingly demonstrate that one does not need more than two types of residues to generate sequences with good thermodynamic folding properties in three dimensions. © 1997 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 5
    ISSN: 1546-170X
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] The purpose of this study was to develop a method of classifying cancers to specific diagnostic categories based on their gene expression signatures using artificial neural networks (ANNs). We trained the ANNs using the small, round blue-cell tumors (SRBCTs) as a model. These cancers belong to four ...
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 1546-1718
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Many of the pediatric solid tumors categorized as small blue round-cell tumors (neuroblastoma, rhabdomyosarcoma, lymphoma and Ewing sarcoma) are difficult to distinguish morphologically, and routine immunohistochemistry may be insufficient to characterize them. Several specialized techniques are ...
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1546-1718
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] We present a supervised regression model for classifying complementary DNA microarray measurements and a method to rank genes according to their importance for the classification. To allow for a supervised regression model with no overfitting, we reduce the dimensionality of the measured samples ...
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature medicine 9 (2003), S. 16-18 
    ISSN: 1546-170X
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Breast cancer continues to be a major cause of premature death in women of Western societies, despite progress in early detection and treatment and advances in our understanding of cancer's molecular basis. Besides the obvious need to develop even more efficient and cancer-cell–specific ...
    Type of Medium: Electronic Resource
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