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  • 1
    ISSN: 1432-1327
    Keywords: Key words Galactose oxidase variant ; Trp290His GOase ; Buffer interactions ; Stability constants ; Redox properties
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract  The indole ring of Trp-290 in galactose oxidase has an important role in restricting entry to the substrate-binding (Cu) site of galactose oxidase via a short ∼8 Å access pocket/channel. It also overlays and helps stabilise the radical-forming Cu-coordinated Tyr-272, reduction potential 400 mV. In this paper the effect of replacing Trp-290 by the less bulky His residue is explored at 25  °C, I=0.100 M (NaCl), and different effects are quantified. Interactions with buffers, not observed in the case of wild-type (WT) GOase, have been investigated by UV-Vis spectrophotometry on the non-radical GOasesemi (CuII) form of the Trp290His variant. Equilibrium constants K eq/M–1 from absorbance changes at 635 nm are for 1 : 1 interactions with the OH-containing buffers H2PO4 – (231), Hepes (43) and Tris (202), concentrations 0–60 mM. No similar interactions are observed with Mes, Lutidine and Ches, when significantly different UV-Vis spectra with no peak at ∼635 nm are obtained. At pH 7.5 the reduction potential for the Trp290His GOaseox/GOasesemi couple is 730 mV, which compares with 400 mV for the WT GOase couple. Consistent with the 730 mV value the GOasesemi form is not oxidised with [Fe(CN)6]3– (410 mV) or [W(CN)8]3– (530 mV), and much stronger oxidants such as [Mo(CN)8]3– (800 mV) and [IrCl6]2– (890 mV) are required. The GOaseox product is unstable and decays within 20 min with re-formation of GOasesemi. From changes in UV-Vis spectra with pH, Trp290His GOasesemi gives a pK a of 6.9, and rate constants for the oxidation of GOasesemi with [Mo(CN)8]3– are dependent on this same pK a. The latter compares with 7.9 for WT GOasesemi, and is assigned here also as protonation of Tyr-495. The 1 : 1 binding of azide at the substrate-binding (H2O) site of Trp290His GOasesemi was studied and gives a formation constant 330 M–1 at pH 7.5, which is an order of magnitude less than the corresponding value for WT GOasesemi. The trends observed indicate less affinity of Trp290His GOasesemi for the ionic reactants H+ and N3 –.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1432-1327
    Keywords: Key words Galactose oxidase ; Copper ; Tyrosine free radical ; Proton abstraction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract  The catalytic mechanism of the copper-containing enzyme galactose oxidase involves a protein radical on Tyr272, one of the equatorial copper ligands. The first step in this mechanism has been proposed to be the abstraction of a proton from the alcohol substrate by Tyr495, the axial copper ligand that is weakly co-ordinated to copper. In this study we have generated and studied the properties of a Y495F variant to test this proposal. X-ray crystallography reveals essentially no change from wild-type other than loss of the tyrosyl hydroxyl group. Visible spectroscopy indicates a significant change in the oxidised Y495F compared to wild-type with loss of a broad 810-nm peak, supporting the suggestion that this feature is due to inter-ligand charge transfer via the copper. The presence of a peak at 420 nm indicates that the Y495F variant remains capable of radical formation, a fact supported by EPR measurements. Thus the significantly reduced catalytic efficiency (1100-fold lower k cat / K m) observed for this variant is not due to an inability to generate the Tyr272 radical. By studying azide-induced pH changes, it is clear that the reduced catalytic efficiency is due mainly to the inability of Y495F to accept protons. This provides definitive evidence for the key role of Tyr495 in the initial proton abstraction step of the galactose oxidase catalytic mechanism.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1617-4623
    Keywords: gdhA1 point mutation ; Deletion analysis ; Recombination frequency ; PCR ; DNA sequencing
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract gdhA1 is a spontaneous mutant of Escherichia coli that causes complete loss of activity of the NADP-specific glutamate dehydrogenase (GDH) encoded by the gdhA gene. The gdhA1 mutational site has been identified by recombinational mapping, polymerase chain reaction (PCR) amplification and DNA sequencing, as an A to G transition at nucleotide 274 of the gdhA coding sequence, resulting in an amino acid change of lysine 92 to glutamic acid. The mutant enzyme forms hybrid hexamers with a wild-type GDH, providing a useful system for analysis of conformational integrity of mutational variants.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1617-4623
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The NADP-dependent glutamate dehydrogenase gene of Klebsiella aerogenes was cloned in E. coli in the expression plasmid pRK9. The cloned gene shows a high level of expression in E. coli in the hybrid plasmid pKG3 and such expression is independent of the vector promoter, as shown by experiments in which the promoter was deleted. Active hybrid GDH hexamers were shown in cell-free extracts of an E. coli strain carrying cloned gdhA genes of both E. coli and K. aerogenes. The nucleotide sequence of the N-terminal coding region of the K. aerogenes gdhA gene was determined and found to be strongly homologous with that of E. coli.
    Type of Medium: Electronic Resource
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