ISSN:
0948-5023
Schlagwort(e):
Keywords Protein modeling
;
Blood coagulation
;
Thrombosis
;
FV
;
FVIII
;
Abbreviations APC
;
activated protein C; FV
;
factor V; FVa
;
activated FV; FVIII
;
factor VIII; FVIIIa
;
activated FVIII; DS domain
;
discoidin domain; 3D
;
three-dimensional; GOase
;
galactose oxidase; PT
;
prothrombinase; PHD
;
profile-fed neural network systems from Heidelberg
Quelle:
Springer Online Journal Archives 1860-2000
Thema:
Chemie und Pharmazie
Notizen:
Abstract Discoidin (DS) domains occur in a large variety of proteins. We have recently reported the D1 domain of galactose oxidase (GOase), a copper-containing enzyme whose structure has been determined at 1.7 Å resolution, as distant member of the DS domain family. The D1 domain of GOase consists of a five-stranded antiparallel β-sheet packing against a three-stranded antiparallel β-sheet. We here show that it is possible to build 3D models for DS domains using GOase as initial template and propose a 3D structure for the C1 and C2 domains of factor V (residues 1879-2037 and 2038-2196). Factors V (FV) and VIII (FVIII) are essential and homologous non-enzymatic cofactors in the coagulation cascade. They share the domain organization A1-A2-B-A3-C1 and C2 and their C domains are members of the DS family. The C1 and C2 domains of FV are rich in positively charged residues. Several clusters of amino acids, most likely involved in inter-domain interactions, protein-protein interactions and/or phospholipid binding, are identified. Our report opens new avenues to study the structure-function relationships of DS domains.
Materialart:
Digitale Medien
URL:
http://dx.doi.org/10.1007/s008940050084
Permalink
