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  • 1
    ISSN: 1471-4159
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Medicine
    Notes: Abstract: Cell culture studies have shown that the Alzheimer amyloid precursor protein (APP) is secreted after full-length APP is cleaved by a putative secretase at the Lys16-Leu17 bond (secretase cleavage I) of the amyloid peptide sequence. Because this cleavage event is incompatible with amyloid production, it has been assumed that secreted APP cannot serve as a precursor of the amyloid depositions observed in Alzheimer's disease. Here we show that in neuronally differentiated PC12 cells and human kidney 293 cell cultures a portion of the secreted extracytoplasmic APP reacted specifically with both a monoclonal antibody recognizing amyloid protein residues Leu17-Val24 and a polyclonal antiserum directed against amyloid protein residues Ala21-Lys28. Furthermore, this APP failed to react with antisera recognizing the cytoplasmic domain of the full-length protein. These data indicate the presence of an alternative APP secretase cleavage site (secretase cleavage II), C-terminal to the predominant secretase cleavage I. Depending on the exact location of cleavage site II, potentially amyloidogenic secreted APP species may be produced.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 113 (2000), S. 5259-5272 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: X−⋅(H2O)n=1–4 [X=F, Cl, Br, I] have been studied using high level ab initio calculations. This extensive work compares the structures of the different halide water clusters and has found that the predicted minimum energy geometries for different cluster are accompanied by several other structures close to these global minima. Hence the most highly populated structures can change depending on temperature due to the entropy effect. As the potential surfaces are flat, the wide-ranging zero point vibrational effects are important at 0 K, and not only a number of low-lying energy conformers but also large amplitude motions can be important in determining structures, energies, and spectra at finite temperatures. The binding energies, ionization potentials, charge-transfer-to-solvent (CTTS) energies, and the O–H stretching frequencies are reported, and compared with the experimental data available. A distinctive difference between F−⋅(H2O)n and X−⋅(H2O)n (X=Cl, Br, I) is noted, as the former tends to favor internal structures with negligible hydrogen bonding between water molecules, while the latter favors surface structures with significant hydrogen bonding between water molecules. These characteristics are well featured in their O–H spectra of the clusters. However, the spectra are forced to be very sensitive to the temperature, which explains some differences between different spectra. In case of F−⋅(H2O)n, a significant charge transfer is noted in the S0 ground state, which results in much less significant charge transfer in the S1 excited state compared with other hydrated halide clusters which show near full charge transfers in the S1 excited states. Finally, the nature of the stabilization interactions operative in these clusters has been explained in terms of many-body interaction energies. © 2000 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 113 (2000), S. 6160-6168 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The water hexamer is known to have a number of isoenergetic structures. The first experimental identification of the O–H stretching vibrational spectra of the water hexamer was done in the presence of benzene. It was followed by the identification of the pure water hexamer structure by vibration-rotational tunneling (VRT) spectroscopy. Although both experiments seem to have located only the Cage structure, the structure of the benzene–water hexamer complex is not clearly known, and the effect of benzene in the water hexamer is unclear. In particular, it is not obvious how the energy difference between nearly isoenergetic water hexamer conformers changes in the presence of benzene. Thus, we have compared the benzene complexes with four low-lying isoenergetic water hexamers, Ring, Book, Cage, and Prism structures, using ab initio calculations. We also investigated the effects of the presence of benzene on the structures, harmonic vibrational frequencies, and infrared (IR) intensities for the four low-lying energy conformers. There is little change in the structure of the water hexamer upon its interaction with the benzene molecule. Hence the deformation energies are very small. The dominant contribution to the benzene–water cluster interaction mainly comes from the π–H interactions between benzene and a single water molecule. As a result of this π–H interaction, O–Hπ bond length increases and the corresponding stretching vibrational frequencies are redshifted. The IR spectral features of both (H2O)6 and benzene–(H2O)6 are quite similar. From both the energetics and the comparison of calculated and experimental spectra of the benzene–(H2O)6, the water structure in these complexes is found to have the Cage form. In particular, among the four different Cage structures, only one conformer matches the experimental O–H vibrational frequencies. © 2000 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 109 (1998), S. 5886-5895 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We investigated five lowest energy structures of the water hexamer (ring, book, bag, cage, and prism) using extensive ab initio calculations. High levels of theory using various basis sets were employed. On the basis of Møller–Plesset second order perturbation (MP2) calculations using a large basis set [9s6p4d2 f1g/6s4p2d]+diffuse(2sp/s), the lowest energy structure with zero point energy (ZPE) correction is the cage conformer, followed by the book (within 0.1 kcal/mol) and the prism (within 0.2 kcal/mol). The spectra of the five conformers have been investigated. The predicted rotational constants and dipole moments of the cage conformer are in good agreement with the experiment [Liu et al., Nature 381, 501 (1996)] as compared to other structures. This proves that the experiment surely found the cage structure, which was first reported by one of the authors [Kim et al., Chem. Phys. Lett. 131, 451 (1986)]. However, the five structures would still be nearly isoenergetic within 0.7 kcal/mol at 0 K. Above ∼40 K, the free energy of the book is slightly lower than the cage, which might imply that the book structure would be detected. Upon deuteration, the cage structure is the lowest energy conformer, followed by two competing structures of the book and prism whose energies are only 0.2 kcal/mol higher at 0 K; above ∼55 K the book would be more populated than the cage. © 1998 American Institute of Physics.
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  • 5
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 99 (1995), S. 2262-2266 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 113 (2000), S. 5273-5277 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A number of experimental and theoretical studies have been carried out on the anionic water hexamer in the last decade. However, none of these studies have reported the adiabatic electron detachment energy. The present study employing extensive high-level ab initio calculations report the adiabatic electron detachment energy, which explains the unusual stability of the anionic water hexamer. This stability can be correlated to the unusually intense peak observed in the photoelectron-detachment spectra. It is also shown that our previously predicted pyramid structure reproduces the important characteristics of the experimental O–H vibrational spectra. © 2000 American Institute of Physics.
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  • 8
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 112 (2000), S. 1769-1781 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The interaction of the water dimer with both the olefinic and aromatic π systems (ethene, benzene, toluene, fluorobenzene, and p-difluorobenzene) has been investigated using both the supermolecular [second-order Møller–Plesset (MP2)] and perturbational (symmetry adapted perturbation theory) approaches. The geometry optimizations, harmonic vibrational frequencies, and the components of the binding energy were evaluated using fairly large basis sets (6-31+G* and aug-cc-pVDZ). The minimum energy structures obtained at the MP2/6-31+G* and MP2/aug-cc-pVDZ levels of theory indicate that the water dimer exhibits a π-type of interaction with ethene, benzene, and toluene and a σ-type of interaction with both fluorobenzene and p-difluorobenzene. This is demonstrated from the vibrational frequencies which are in good agreement with the experimentally determined numbers. Our calculations indicate that the nature and strength of the interaction of the donor water molecule (water dimer) with the π system has a significant bearing on the total binding energy of the complex. Apart from the interaction of the water dimer with the π system, we also show how this interaction influences the hydrogen bond characteristics of the water dimer by evaluating the hydrogen bond strengths. © 2000 American Institute of Physics.
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  • 9
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 112 (2000), S. 9335-9342 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The low-lying electronic states of Ag3−(1Σg+,3B2), Ag3(2B2,2A1,2B1,4B2,2Σu+,1 2Σg+,2 2Σg+,2Πu,4Σu+), and Ag3+(1A1,1Σg+,3Σu+,3A1) are studied by ab initio calculations with the Stuttgart effective core potentials and corresponding (8s7p6d)/[6s5p3d] and (8s7p5d3f )/[6s5p3d3f] basis sets. The geometries, vibrational frequencies, and energetic splittings are obtained by the coupled-cluster method including singles and doubles (CCSD) and those including up to the noniterative triples [CCSD(T)] correlation methods with additional frozen core molecular orbitals corresponding to 4s and 4p orbitals. The results for well-studied states (Ag3− 1Σg+;Ag3 2B2,2A1,2Σu+;Ag3+ 1A1) are in good agreement with previous experimental results, and therefore our results for other newly studied states are expected to be reliable. The vertical detachment energies of Ag3− are obtained by the electron excitation equation-of-motion coupled-cluster (EE-EOM-CCSD) method and the average deviation from the experimental results is small without any scaling correction of the obtained values. The effect of the f-functions in the basis sets and the noniterative triples in the CCSD(T) method is discussed; the bond lengths are reduced significantly and the vertical detachment energies and ionization potentials are in much better agreement with experiment. © 2000 American Institute of Physics.
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  • 10
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 111 (1999), S. 10077-10087 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We have studied the electronic structures, energetics, electron vertical detachment energies (VDEs), and O–H vibrational spectra of various conformers of water clusters with an excess electron [e+(H2O)n, n=2–5] or anionic water clusters [(H2O)n−] using comprehensive ab initio calculations. As noted in our preliminary work [J. Kim et al., Phys. Rev. A 59, 930 (1999)], the structure of the water dimer anion is characterized to be linear-like (slightly towards the cis conformer) but very floppy with large wide-ranging zero point vibration motion at 0 K. The lowest energy structures of the water trimer to pentamer anion are all cyclic with very small VDEs (〈 0.05 eV). However, these cyclic structures which are metastable are prone to become the neutral species by releasing an excess electron because the transition barriers seem to be very small. Thus, observation of such cyclic structures would not be feasible. On the other hand, a linear water trimer structure which is 0.8 kcal/mol higher in energy than the cyclic form gives the VDE (0.14 eV) close to the experimentally observed value. A large VDE observed in the pentamer also corresponds to a slightly high energy conformer. This suggests that formation of anionic water clusters in experiments seems to be dynamically and kinetically driven. © 1999 American Institute of Physics.
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