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  • 1
    Digitale Medien
    Digitale Medien
    Springer
    The journal of supercomputing 5 (1991), S. 99-117 
    ISSN: 1573-0484
    Schlagwort(e): Symmetry ; group action graphs ; Cayley graphs ; interconnection networks ; chess endgames ; distributed memory
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Informatik
    Notizen: Abstract Efficient space and time exploitation of symmetry in domains on highly parallel, distributed-memory architecture is, in certain cases, equivalent to routing along a labeled group action graph, with computation associated with each group element label, where the group of symmetries acts on the processors. The algebraic structure of the group can sometimes be analyzed to determine, a priori, space and time efficient routing schedules on the hardware network (which, in practice, is often another group action graph). The algorithms we develop were implemented on a 64K-processor CM-2 and used to solve certain natural classes of chess endgames, part of whose search space is invariant under a noncommutative crystallographic group. This program runs 400 times faster than any previous implementation, and discovered many interesting new results in the area; some of these results are not solvable in practice with current serial techniques because the time and space requirements are too large. It seems interesting that it was possible, albeit with difficulty, to implement efficiently certain irregular chess rules on the CM-2, which is optimized for regular data sets.
    Materialart: Digitale Medien
    Bibliothek Standort Signatur Band/Heft/Jahr Verfügbarkeit
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  • 2
    Digitale Medien
    Digitale Medien
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 14 (1993), S. 1396-1406 
    ISSN: 0192-8651
    Schlagwort(e): Computational Chemistry and Molecular Modeling ; Biochemistry
    Quelle: Wiley InterScience Backfile Collection 1832-2000
    Thema: Chemie und Pharmazie , Informatik
    Notizen: An algorithm is presented within the context of the calculation of the time-relaxation behavior of the hydration shells around atomic sites in biomolecules. We report a calculation of the time-relaxation behavior of the first and second hydration shells of polar, hydrophobic, and charged groups in a protein, crambin. The water mean residence times around protein groups are obtained from averages over configurations sampled during a 325-ps molecular dynamics simulation of crambin in solution. A convolution arising in the calculation of the mean relaxation time is implemented using a parallel prefix operator. A new characterization is given of the parallel prefix operator as a linear transformation, and this formulation enables us to derive efficient factorization of the convolution as a product of two parallel prefix operations. The parallel prefix operations are implemented in logarithmic time. © John Wiley & Sons, Inc.
    Zusätzliches Material: 2 Ill.
    Materialart: Digitale Medien
    Bibliothek Standort Signatur Band/Heft/Jahr Verfügbarkeit
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