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  • 1
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 93 (1989), S. 6929-6939 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 95 (1991), S. 5948-5952 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Molecular dynamics simulations of the kinetics of a model of the reaction A+B→B in a dense hard-sphere liquid are compared with the predictions of the Smoluchowski approach to diffusion-influenced reactions. The theory employs the radiation boundary condition at contact with an intrinsic rate constant determined by the low-density collision frequency and the potential of mean force determined by the pair distribution function. Hydrodynamic interactions are ignored and the relative diffusion coefficient is taken as twice the self-diffusion constant. Considering the lack of free parameters and the many-body nature of the problem, the agreement between theory and simulations is surprisingly good over a wide range of B concentrations. Of particular interest is that the above theory provides an exact description of the kinetics at short times.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 95 (1991), S. 2481-2490 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Three formalisms that describe the influence of diffusion on the kinetics of the reversible reaction, A+B(r harp over l)AB, are discussed and compared. The simplest involves a modification of the irreversible rate equations of Smoluchowski theory; the second is based on a generalization of physically appealing convolution relations that hold rigorously for reversible reactions between isolated pairs, and the third can be obtained by using a superposition approximation to truncate the hierarchy of equations satisfied by the reactive reduced distribution functions. The various formalisms are developed to the point that their implementation requires knowledge only of the time-dependent irreversible association rate coefficient and the microscopic dissociation rate constant. All these approaches give the correct equilibrium concentrations at infinite time, have the same short-time behavior, reduce correctly when the dissociation rate is zero, and become equivalent in the reaction-controlled limit. However, none of them provides an exact treatment of the underlying many-particle diffusive model of the reaction. Some illustrative calculations are presented and the relative merits of these approaches are discussed. All three approaches predict that the relaxation of a small initial deviation of the concentrations from their equilibrium values is nonexponential, except, of course, in the reaction-controlled limit. With a view towards treating monomer–excimer kinetics, the formalisms are generalized to incorporate unimolecular decay pathways.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 92 (1990), S. 3874-3880 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A dynamical mean field theory is developed for the frequency dependence of the modulation and phase angle that are monitored in frequency domain fluorometric studies of diffusion-influenced fluorescence quenching. These quantities are obtained directly in the frequency domain by solving an implicit equation involving the Laplace transform [kˆ(z)] of the time dependent bimolecular rate coefficient [k(t)] that plays a central role in the Smoluchowski approach to this problem. For several models of the quenching process, the mean field results are compared with those obtained by Fourier transforming the time domain response calculated using the Smoluchowski approach. The agreement is good except at high quencher concentrations. For models where kˆ(z) is known analytically, the mean field approach is computationally simpler than the Smoluchowski one. This is even more so when it is not possible to find k(t) analytically from kˆ(z) (e.g., a model in which the nonradiative lifetime of a quencher-fluorophore pair is constant up to a critical separation but infinite thereafter).
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 89 (1988), S. 1128-1140 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The results of the Brownian dynamics simulation of a hydrocarbon chain in a membrane bilayer described in the preceding paper are used to analyze the 13C NMR T1 relaxation in lipid bilayer vesicles. The analysis shows that the frequency dependence of the relaxation does not arise from gauche–trans isomerization or from axial rotation of the entire lipid molecule. However, a model in which fast axial rotation (D(parallel)≈2×1010 s−1) and slow noncollective diffusive director fluctuations (D⊥≈1–2×108 s−1) are superimposed on the internal motions quantitatively accounts for both the magnitude and frequency dependence of the T1 data. An effective viscosity for the interior of the bilayer in the range of 1 cp, and a director order parameter of 0.5–0.7 are required to fit the NMR data. Collective effects do not appear necessary for explaining the NMR T1 data in vesicles, although they may be important for multilamellar dispersions.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 97 (1992), S. 5098-5100 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The frictional dependence of the flipping rate of a linear rotor in a Maier–Saupe potential is evaluated from Langevin dynamics simulations. By assuming that the azimuthal angular velocity is rapidly thermalized, an approximate analytic expression for the rate is obtained within the framework of the Mel'nikov–Meshkov treatment of the Kramers turnover problem for one-dimensional bistable potentials. The predictions of this expression are in good agreement with the accurate simulation results.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 93 (1990), S. 8771-8776 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The recombination after flash photolysis of carbon monoxide (CO) to protoheme (PH) in glycerol: water is studied over ten decades in time (1 ps to 10 ms). The rebinding consists of an initial nonexponential geminate phase followed by a slower exponential bimolecular phase. The entire time course of this reaction between 260 and 300 K can be explained in a unified way using a simple, analytically tractable diffusion model involving just three parameters: the relative diffusion constant, the contact radius, and the intrinsic rate of reaction at contact.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 92 (1990), S. 5270-5284 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A unified theory of reversible diffusion-influenced geminate and pseudo- first-order reactions is developed. Explicit results are presented for the time dependence of the fraction of molecules that are dissociated at time t for a variety of initial conditions. To introduce the basic ideas of our approach, an elementary and rather complete treatment of the irreversible reaction between a pair of interacting, spherically symmetric particles is presented. The focus is on deriving relations among survival probabilities and bimolecular time-dependent rate coefficients for the radiation and absorbing boundary conditions and the asymptotic behavior of these quantities. These relations are then generalized to reversible geminate reactions. For example, it is shown that the separation probability for an initially bound pair satisfies a simple convolution relation involving the survival probability of an irreversibly reacting geminate pair initially at contact. An analytic expression is obtained for this separation probability that is exact for free diffusion and is an accurate approximation for interacting particles. Finally, the Smoluchowski approach to irreversible pseudo-first-order reactions is extended to reversible reactions. The analysis is based on the generalization of the convolution relations that are rigorously valid for isolated pairs.
    Type of Medium: Electronic Resource
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  • 9
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Biochemistry 20 (1981), S. 4618-4628 
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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