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  • Biochemistry and Biotechnology  (18)
  • SOLID Retrieval/Processing System  (6)
  • Genetics  (4)
  • 1
    ISSN: 1573-8787
    Schlagwort(e): Transparent Query Language ; Mathematically Complete Language ; Philosophically Closed Language ; SOLID Retrieval/Processing System
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Informatik
    Notizen: Abstract This part, PART IIB [2], of the document “HIGH-SPEED TOOLS FOR GLOBAL INFORMATION MANAGEMENT. II. Specifications and Uses of the Transparent Query Language (TQL)” [1–6] contains the specifications for the operations that provide the arithmetic capabilities for Transparent Query Language. PART IIB references PART IIA [1] and PART IIC [3]. Concise definitions of Transparent Query Language terms, Conclusions and Acknowledgments are given in PART IIF [6].
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  • 2
    ISSN: 1573-8787
    Schlagwort(e): Transparent Query Language ; Mathematically Complete Language ; Philosophically Closed Language ; SOLID Retrieval/Processing System
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Informatik
    Notizen: Abstract This part, PART IIC [3], of the document “HIGH-SPEED TOOLS FOR GLOBAL INFORMATION MANAGEMENT. II. Specifications and Uses of the Transparent Query Language (TQL)” [1–6] is a continuation of [2] and should be studied immediately after reading PART IIB [2]. It describes (i) the security system that can be easily invoked to deny unauthorized access to any item of information in any database; (ii) the special codes that can be used to specify virtually any degree of uncertainty; (iii) the registry numbers which terminate information paths; and (iv) the command structure for the Transportable Query Language. PART IIC references PART IIA [1], PART IIB [2], PART IID [4] and PART IIF [6]. Concise definitions of Transparent Query Language terms, Conclusions and Acknowledgments are given in PART IIF [6].
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  • 3
    ISSN: 1573-8787
    Schlagwort(e): Transparent Query Language ; Mathematically Complete Language ; Philosophically Closed Language ; SOLID Retrieval/Processing System
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Informatik
    Notizen: Abstract In the six parts of the document “HIGH-SPEED TOOLS FOR GLOBAL INFORMATION MANAGEMENT. II. Specifications and Uses of the Transparent Query Language (TQL)” [1–6], the Transparent Query Language (TQL) that is the mathematical basis for the SOLID Retrieval/Processing System [7] is described and its use demonstrated. TQL is directly responsible for the speed, versatility, security and information/question-type independence of the SOLID System. It can be viewed as a Mathematically Complete (or Philosophically Closed) [8] data structure or content/context independent language capable of describing individual or classes of descriptors in any combination with any degree of specificity. The security system is easily used to prevent unauthorized access to any item in any file. TQL is sufficiently general to be used outside the context of information retrieval. It is capable of concisely representing and manipulating a wide variety of time dependent or static numeric and non-numeric information. The six parts of this document [1–6], are as follows. The first part, PART IIA [1], contains a review of the literature and then introduces the Transparent Query Language. It references PART IIB [2], PART IIC [3], PART IID [4], PART IIE [5] and PART IIF [6]. Concise definitions of Transparent Query Language terms, Conclusions and Acknowledgments are given in PART IIF [6]. Section III in PART IIA [1] contains information for converting citations of sections and subsections in the original document to their locations in the partitioned document.
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  • 4
    ISSN: 1573-8787
    Schlagwort(e): Transparent Query Language ; Mathematically Complete Language ; Philosophically Closed Language ; SOLID Retrieval/Processing System
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Informatik
    Notizen: Abstract This part, PART IID [4], of the document “HIGH-SPEED TOOLS FOR GLOBAL INFORMATION MANAGEMENT. II. Specifications and Uses of the Transparent Query Language (TQL)” [1–6] is about normalization and manipulation of information representations. It references PART IIA [1], PART IIB [2] and PART IIC [3]. Concise definitions of Transparent Query Language terms, Conclusions and Acknowledgments are given in PART IIF [6].
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  • 5
    ISSN: 1573-8787
    Schlagwort(e): Transparent Query Language ; Mathematically Complete Language ; Philosophically Closed Language ; SOLID Retrieval/Processing System ; Sequel (SQL) ; Relational Algebra ; QUEL ; Query-By-Example (QBE)
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Informatik
    Notizen: Abstract In this part, PART IIE [5], of the document “HIGH-SPEED TOOLS FOR GLOBAL INFORMATION MANAGEMENT. II. Specifications and Uses of the Transparent Query Language (TQL)” [1–6] the conversion of queries coded in SQL, Relational Algebra, QUEL and Query-By-Examples (QBE) to TQL are demonstrated. PART IIE references PART IIA [1], PART IIB [2], PART IID [3] and PART IIF [6]. Concise definitions of Transparent Query Language terms, Conclusions and Acknowledgments are given in PART IIF [6].
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  • 6
    ISSN: 1573-8787
    Schlagwort(e): Transparent Query Language ; Mathematically Complete Language ; Philosophically Closed Language ; SOLID Retrieval/Processing System
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Informatik
    Notizen: Abstract This part, PART IIF [6], concludes the document “HIGH-SPEED TOOLS FOR GLOBAL INFORMATION MANAGEMENT. II. Specifications and Uses of the Transparent Query Language (TQL)” [1–6]. It describes novel applications of TQL, the key data structures, and contains a dictionary of Transparent Query Language terms. PART IIF references PART IIA [1], PART IIB [2], PART IIC [3], PART IID [4], and PART IIE [5] and contains Conclusions and Acknowledgements.
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  • 7
    Digitale Medien
    Digitale Medien
    Springer
    Journal of industrial microbiology and biotechnology 14 (1995), S. 355-364 
    ISSN: 1476-5535
    Schlagwort(e): Transformation ; Fungi ; Yeast ; Genetics ; Biotechnology
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie , Werkstoffwissenschaften, Fertigungsverfahren, Fertigung
    Notizen: Summary The genetic investigation of fungi has been extended substantially by DNA-mediated transformation, providing a supplement to more conventional genetic approaches based upon sexual and parasexual processes. Initial transformation studies with the yeastSaccharomyces cerevisiae provided the model for transformation systems in other fungi with regard to methodology, vector construction and selection strategies. There are, however, certain differences betweenS. cerevisiae and filamentous fungi with regard to type of genomic insertion and the availability of shuttle vectors. Single-site linked insertions are common in yeast due to the high level of homology required for recombination between vectored and genomic sequences, whereas mycelial fungi often show a high frequency of heterologous and unlinked insertions, often in the form of random and multiple-site integrations. While extrachromosomally-maintained or replicative vectors are readily available for use with yeasts, such vectors have been difficult to construct for use with filamentous fungi. The development of vectors for replicative transformation with these fungi awaits further study. It is proposed that replicative vectors may be inherently less efficient for use with mycelial fungi relative to yeasts, since the mycelium, as an extended and semicontinuous network of cells, may delimit an adequate diffusion of the vector carrying the selectable gene, thus leading to a high frequency of abortive or unstable transformants.
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  • 8
    Digitale Medien
    Digitale Medien
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 55 (1997), S. 616-629 
    ISSN: 0006-3592
    Schlagwort(e): cell adhesion ; radial-flow chamber ; hydrodynamic shear ; detachment kinetics ; Chemistry ; Biochemistry and Biotechnology
    Quelle: Wiley InterScience Backfile Collection 1832-2000
    Thema: Biologie , Werkstoffwissenschaften, Fertigungsverfahren, Fertigung
    Notizen: The strength of adhesion and dynamics of detachment of murine 3T3 fibroblasts from self-assembled monolayers were measured in a radial-flow chamber (RFC) by applying models for fluid mechanics, adhesion strength probability distributions, and detachment kinetics. Four models for predicting fluid mechanics in a RFC were compared to evaluate the accuracy of each model and the significance of inlet effects. Analysis of these models indicated an outer region at large radial positions consistent with creeping flow, an intermediate region influenced by inertial dampening, and an inner region dominated by entrance effects from the axially-oriented inlet. In accompanying experiments patterns of the fraction of cells resisting detachment were constructed for individual surfaces as a function of the applied shear stress and evaluated by comparison with integrals of both a normal and a log-normal distribution function. The two functions were equally appropriate, yielding similar estimates of the mean strength of adhesion. Further, varying the Reynolds number in the inlet, Red, between 630 and 1480 (corresponding to volumetric flow rates between 0.9 and 2.1 mL/s) did not affect the mean strength of adhesion. For these same experiments, analysis of the dynamics of detachment revealed three temporal phases: 1) rapid detachment of cells at the onset of flow, consistent with a first-order homogeneous kinetic model; 2) time-dependent rate of detachment during the first 30 sec. of exposure to hydrodynamic shear, consistent with the first-order heterogeneous kinetic model proposed by Dickinson and Cooper (1995); and 3) negligible detachment, indicative of pseudo-steady state after 60 sec. of flow. Our results provide rigorous guidelines for the measurement of adhesive interactions between mammalian cells and prospective biomaterial surfaces using a RFC. © 1997 John Wiley & Sons, Inc. Biotechnol Bioeng 55: 616-629, 1997.
    Zusätzliches Material: 10 Ill.
    Materialart: Digitale Medien
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  • 9
    ISSN: 0887-3585
    Schlagwort(e): structure-based drug design ; ligand-protein recognition ; binding landscapes ; docking funnels ; stochastic search ; Chemistry ; Biochemistry and Biotechnology
    Quelle: Wiley InterScience Backfile Collection 1832-2000
    Thema: Medizin
    Notizen: Energy landscapes of molecular recognition are explored by performing “semi-rigid” docking of FK-506 and rapamycin with the Fukisawa binding protein (FKBP-12), and flexible docking simulations of the Ro-31-8959 and AG-1284 inhibitors with HIV-1 protease by a genetic algorithm. The requirements of a molecular recognition model to meet thermodynamic and kinetic criteria of ligand-protein docking simultaneously are investigated using a family of simple molecular recognition energy functions. The critical factor that determines the success rate in predicting the structure of ligand-protein complexes is found to be the roughness of the binding energy landscape, in accordance with a minimal frustration principle. The results suggest that further progress in structure prediction of ligand-protein complexes can be achieved by designing molecular recognition energy functions that generate binding landscapes with reduced frustration. © 1996 Wiley-Liss, Inc.
    Zusätzliches Material: 10 Ill.
    Materialart: Digitale Medien
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  • 10
    Digitale Medien
    Digitale Medien
    New York, NY : Wiley-Blackwell
    Proteins: Structure, Function, and Genetics 28 (1997), S. 421-433 
    ISSN: 0887-3585
    Schlagwort(e): molecular recognition ; binding energy landscapes ; recognition nucleus ; structural harmony ; minimal frustration principle ; Chemistry ; Biochemistry and Biotechnology
    Quelle: Wiley InterScience Backfile Collection 1832-2000
    Thema: Medizin
    Notizen: Computational structure prediction of streptavidin-peptide complexes for known recognition sequences and a number of random di-, tri-, and tetrapeptides has been conducted, and mechanisms of peptide recognition with streptavidin have been investigated by a new computational protocol. The structural consensus criterion, which is computed from multiple docking simulations and measures the accessibility of the dominant binding mode, identifies recognition motifs from a set of random peptide sequences, whereas energetic analysis is less discriminatory. The predicted conformations of recognition tripeptide and tetrapeptide sequences are also in structural harmony and composed of peptide fragments that are individually unfrustrated in their bound conformation, resulting in a minimally frustrated energy landscape for recognition peptides. Proteins 28:421-433, 1997. © 1997 Wiley-Liss, Inc.
    Zusätzliches Material: 8 Ill.
    Materialart: Digitale Medien
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