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  • Polymer and Materials Science  (59)
  • Chemistry  (38)
  • 1
    Electronic Resource
    Electronic Resource
    Infinite-dilution viscoelastic properties of tobacco mosaic virus (1975)
    New York : Wiley-Blackwell
    Biopolymers 14 (1975), S. 409-417 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The storage and loss shear moduli, G′ and G″, have been measured for dilute solutions of unaggregated and aggregated tobacco mosaic virus samples in glycerol-water mixtures, by the Birnboim-Schrag multiple-lumped resonator modified for use with aqueous solvents. The frequency range was 100-5800 Hz, the concentration range 0.6-2.1 × 10-3 g/ml, and the temperatures 25.0° and 37.8°C. The number-average and weight-average molecular weights of the aggregated sample were estimated as 1.4 and 2.0 × 108, respectively, from electron microscopy. The extrapolated intrinsic moduli [G′] and [G″] were compared with the predictions of the Kirkwood-Auer theory for rigid rodlike molecules. For the unaggregated sample, the frequency dependence of [G′] and [G″] agreed well with the theory assuming the intrinsic viscosity to be 27 ml/g, though the asymptotic limit of [G′]M/RT at higher frequencies was slightly larger than the theoretical value of 3/5. For the aggregated sample, the data agreed with theory for rigid rods as modified to account for molecular-weight distribution.
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1975.360140213
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  • 2
    Electronic Resource
    Electronic Resource
    Studies of fibrin film. I. Stress relaxation and birefringence (1982)
    New York : Wiley-Blackwell
    Biopolymers 21 (1982), S. 1811-1832 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Measurements of stress relaxation in uniaxial extension and associated time-dependent birefringence have been made on bovine fibrin film, prepared by gentle compaction of coarse fibrin clots, containing 13-22% fibrin plasticized with either aqueous buffer or glycerol. Both unligated and ligated (i.e., with α-α and γ-γ ligation by fibrinoligase, factor XIIIa) films were studied. Both types showed two stages of stress relaxation, with time scales of approximately 10 and 103-104 s, respectively, with a plateau region between. In the plateau, the nominal (engineering) stress for ligated glycerol-plasticized film is proportional to In λ, where λ is the stretch ratio, up to λ ≅ 2, and it decreases with increasing temperature. For unligated glycerol-plasticized film, the stresses are smaller by a factor of one-half to one-third. For ligated film, the second stage of relaxation is relatively slight, and recovery after release of stress is often nearly complete. For unligated film, the second stage involves a substantial drop in stress, and after recovery there is a significant permanent set. A second relaxation for ligated film reproduces the first, but for unligated film it reproduces the first only if the initial relaxation is terminated before the second stage; otherwise, the second relaxation shows a weaker structure. The behavior of water-plasticized film is similar to that of glycerol-plasticized except that the second stage of relaxation occurs at shorter times. During the first stage of stress relaxation, up to about 100 s, the birefringence and the stress-optical coefficient increase; during the plateau zone of stress relaxation, the birefringence of ligated films is approximately constant and is proportional to 2λ2/(λ2 + 1) - 1, where λ is the stretch ratio. This dependence is predicted by a two-dimensional model in which rodlike elements in the plane of the film are oriented with independent alignment. During the final stage of stress relaxation, the birefringence of ligated films decreases slightly; that of unligated films decreases substantially, but less rapidly than the stress, corresponding to a further increase in the stress-optical coefficient. With additional information from small-angle x-ray scattering reported in an accompanying paper, the first stage of relaxation is attributed to partial release of bending forces in the fibers by orientation, accompanied by increased birefringence. The second stage is attributed, for ligated films, to an internal transition in the fibrin units accompanied by elongation of some of the fibers; and in the unligated films, to a combination of the latter transition with slippage of protofibrils lengthwise within the fiber bundles that causes some loss of orientation, which diminishes the birefringence.
    Additional Material: 16 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.360210910
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  • 3
    Electronic Resource
    Electronic Resource
    Kinetics of formation of fibrin oligomers. III. Ligation kinetics concurrent with and subsequent to oligomer assembly (1984)
    New York : Wiley-Blackwell
    Biopolymers 23 (1984), S. 127-138 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Human fibrinogen was treated with thrombin in the presence of fibrinoligase (Factor XIIIa) and calcium ion at pH 8.5, ionic strength 0.45, and the ensuing polymerization was interrupted at various time intervals (t) both before and after the clotting time (tc) by solubilization with a solution of sodium dodecyl sulfate and urea. Aliquots of the solubilized protein were subjected to gel electrophoresis on polyacrylamide gels after disulfide reduction by dithiothreitol and on agarose gels without reduction. The degree of γ-γ ligation was determined from the former. The latter provided the size distribution of ligated end-to-end sequences produced by splitting the ligated staggered overlapped oligomers down the middle, for degrees of polymerization, x, from 1 to 10. Addition of fibrinoligase (in which the activating thrombin had been inhibited by p-nitrophenyl-p′-guanidinobenzoate, NPGB) to Kabi fibrinogen showed the presence of small amounts of ligatable oligomers. Addition of fibrinoligase to a polymerizing mixture in which the action of thrombin had been stopped before clotting by NPGB produced the same distribution of ligated end-to-end sequences that was obtained when fibrinoligase was originally present, at least for reaction times up to 0.7 of the clotting time. The kinetics of γ-γ ligation by fibrinoligase acting on a polymerized mixture stabilized by NPGB were followed. The reaction was first order in the concentration of ligatable γ-γ junctions and the initial velocity was proportional to the enzyme concentration. The time evolution of size distribution of ligated end-to-end sequences agreed with a theory based on random ligation of ligatable junctions.
    Additional Material: 6 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.360230110
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  • 4
    Electronic Resource
    Electronic Resource
    Rheological studies of creep and creep recovery of unligated fibrin clots: Comparison of clots prepared with thrombin and ancrod (1985)
    New York : Wiley-Blackwell
    Biopolymers 24 (1985), S. 461-482 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Mechanical creep and creep recovery in small shearing deformations have been studied in unligated clots formed with both thrombin and ancrod. In thrombin clots, both A binding sites (which interact with “a” sites to link monomer units within a protofibril) and B sites (which interact with “b” sites to form links between protofibrils) are exposed to enable formation of linkages; in ancrod clots, only the A sites are exposed. Fine clots (with minimal lateral aggregation of protofibrils), coarse clots (with substantial aggregation of fibril bundles), and clots of intermediate coarseness were compared. Fine thrombin clots showed less creep at short times but more creep at long times than coarse or intermediate clots and had more irrecoverable deformation relative to the initial elastic deformation. Ancrod clots had greater irrecoverable deformation than the corresponding thrombin clots, both fine and coarse. The permanent deformation in fine ancrod clots was enormous, corresponding almost to fluid character; the rate of permanent deformation was larger than that in fine thrombin clots by more than two orders of magnitude. For all types of clots, differential measurements of compliance (or its reciprocal, elastic modulus), as well as the applicability of the Boltzmann superposition principle to calculation of creep recovery, showed that the overall density of structure remained constant throughout the mechanical history; i.e., if structural elements were breaking, they were reforming at the same rate in different configurations. The possibility that the weakness of ancrod clots is attributable to partial degradation of α-chains rather than absence of Bb linkages was eliminated by comparisons of clots made with thrombin, ancrod, and ancrod plus thrombin; the last two showed identical partial degradation of α-chains (by gel electrophoresis), but the first and third had essentially identical initial elastic moduli and creep behavior. Two alternative mechanisms for irrecoverable deformation in fine clots are discussed, involving rupture of protofibrils and slippage of twisted segments, respectively.
    Additional Material: 12 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.360240304
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  • 5
    Electronic Resource
    Electronic Resource
    Infinite-dilution viscoelastic properties of poly-γ-benzyl-L-glutamate in helicogenic solvents (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1905-1915 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The storage and loss shear moduli, G, and G˝, have been measured for solutions of three samples of poly-γ-benzyl-L-glutamate with molecular weights from 16 to 57 × 104, by use of the Birnboim-Schrag multiple-lumped resonator. The frequency range was 106 to 6060 Hz, the concentration range 0.0015-0.005 g/ml, and the temperature 25°C. Two helicogenic solvents with widely different viscosities, dimethylformamide and m-cresol, were used to provide a broader effective frequency range. The intrinsic moduli, extrapolated to infinite dilution, were compared with the predictions of the theory of Ullman for rigid rods; agreement was rather good at the lowest frequencies, but unsatisfactory at high frequencies. The data over the entire frequency range of three of logarithmic decades could be described closely by a relaxation spectrum consisting of one terminal relaxation time separated by a gap from a sequence of relaxtion times spaced as in the Zimm theory. The terminal time agrees approximately with that calculated for end-over-end rotation of a rigid rod. The additional relaxation mechanisms are tentatively attributed to modes of flexural deformation of the helix.
    Additional Material: 6 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1973.360120816
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  • 6
    Electronic Resource
    Electronic Resource
    Kinetics of formation of fibrin oligomers. II. Size distributions of ligated oligomers (1982)
    New York : Wiley-Blackwell
    Biopolymers 21 (1982), S. 2265-2277 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Human fibrinogen was treated with thrombin in the presence of fibrinoligase (Factor XIIIa) and calcium ion at pH 8.5, ionic strength 0.45, and the ensuing polymerization was interrupted at various time intervals (t) both before and after the clotting time (tc) by solubilization with a solution of sodium dodecylsulfate and urea. Aliquots of the solubilized protein were subjected to gel electrophoresis on polyacrylamide gels after disulfide reduction by dithiothreitol and on agarose gels without reduction. The degree of γ-γ ligation was determined from the former and the size distribution of ligated oligomers, for degree of polymerization x from 1 to 10, from the latter. In some experiments, thrombin was inhibited, after partial polymerization, by p-nitrophenyl-p′-guanidinobenzoate. From these, it was concluded that for thrombin concentration ≤0.013 units/mL and fibrinoligase ≥30 mg/L, oligomer assembly is rapid compared with peptide A release and ligation is rapid compared with assembly. Under these conditions, the theory of the first paper of this series describes rather well the time dependences of the degree of γ-γ ligation, the weight fractions of monomer and small oligomers, and the number- and weight-average degrees of polymerization after solubilization of the staggered overlapped assemblies, each of which splits to give two strands of end-to-end ligated oligomers. The theory assumes that the second A peptide is released by thrombin more rapidly than the first by a factor q, which, from the experimental data, is determined to be 16. The subsequent assembly into staggered overlapped oligomers follows the statistics of linear polycondesation taking into account the presence of both difunctional and monofunctional combining units. For higher thrombin or lower fibrinoligase concentrations, ligation fails to keep pace with oligomer assembly, and the size distributions after solubilization show a higher proportion of very small and a lower proportion of larger ligated oligomers, owing to separation of the staggered overlapped assemblies into smaller fragments.
    Additional Material: 10 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.360211113
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  • 7
    Electronic Resource
    Electronic Resource
    Gel formation by fibrin oligomers without addition of monomers (1986)
    New York : Wiley-Blackwell
    Biopolymers 25 (1986), S. 1337-1344 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Soluble fibrin oligomers were formed by reacting fibrinogen with thrombin under fine clotting conditions where the action of thrombin is the rate-determining step for polymerization, and by inhibiting the reaction shortly before gelation. Oligomeric fibrin was separated from unreacted fibrinogen and small oligomers by gel permeation chromatography. Electron microscopy revealed that the largest soluble fibrin oligomers resemble the protofibrils present in fine clots, but are somewhat shorter and entirely lack the twisted, trifunctional junctions that contribute to the elastic properties of fine clots. When thrombin was added to the soluble fibrin oligomers, polymerization resumed and clots were formed at a more rapid rate than from fibrinogen at the same concentration and resulted in a less-opaque clot under coarse clotting conditions. The results confirm a prediction of a theory for the polymerization of fibrin and provide additional evidence that the final state of a coarse fibrin clot depends on the mobility of protofibrils during its formation.
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.360250712
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  • 8
    Electronic Resource
    Electronic Resource
    Interaction of the fibrinogen-binding tetrapeptide gly-pro-arg-pro with fine clots and oligomers of α-fibrin; comparison with αβ-fibrin (1988)
    New York : Wiley-Blackwell
    Biopolymers 27 (1988), S. 775-788 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The tetrapeptide Gly-Pro-Arg-Pro(GPRP) was introduced by diffusion into fine unligated clots formed from human fibrinogen at pH 8.5 and ionic strength 0.45 by batroxobin (αβ-fibrin) and by thrombin (α-fibrin). The α-fibrin clots were essentially liquefied at GPRP concentrations above 1 mM and αβ-fibrin clots above 15 mM, and the degree of polymerization of the resulting oligomers decreased progressively with increasing GPRP concentration as shown by γ-γ ligation with factor XIIIa and subsequent gel electrophoresis. Much smaller concentrations of GPRP, when introduced into unligated clots by diffusion, were sufficient to modify their mechanical properties profoundly. The shear modulus of elasticity G25 measured 25 s after imposition of stress fell, for example, by a factor of 0.4 at 0.1 mM GPRP in α-fibrin and at 1.1 mM in αβ-fibrin. The rate of shear creep under constant stress and the proportion of irrecoverable deformation also increased enormously. This behavior, and the corresponding decrease in steady flow viscosity, may be interpreted in terms of competition of GPRP with A sites on the E domains of fibrin monomers for bidning to “a” sites on the D domains, resulting in a moderate increase with increasing GPRP concentration of the average proportion of severed network strands and an enormous increase in the rate at which all strands dissociate and reassociate. Reassociation of severed strands in new configurations is a necessary corollary since the differential modulus or compliance remains constant during creep and creep recovery. The greater susceptibility of α-fibrin clots to interaction with GPRP is attributed to stabilization of contacts between monomer units by Bb associations in αβ-fibrin. Ligated clots, with or without GPRP, exhibited essentially no time-dependent creep and no irrecoverable deformation, corresponding to an absence of any severance of network strands.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.360270506
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  • 9
    Electronic Resource
    Electronic Resource
    Viscoelastic properties of 1,2-polybutadiene - comparison with natural rubber and other elastomers (1968)
    New York : Wiley-Blackwell
    Journal of Polymer Science Part A-2: Polymer Physics 6 (1968), S. 967-980 
    Details
    ISSN: 0449-2978
    Keywords: Physics ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Viscoelastic properties of uncrosslinked 1,2-polybutadiene (91.5% vinyl, 7.0% cis, 1.5% trans, number-average molecular weight 99,000) were studied by dynamic shear measurements between 0.15 and 600 cps (torsion pendulum and Fitzgerald transducer) and shear creep measurements over time periods up to 3.7 × 104 sec., in the temperature rang from 5 to 50°C. More limited dynamic measurements were made on a sample of unvulcanized natural rubber with number-average molecular weight 350,000 at frequencies from 0.4 to 400 cps and temperatures from 13 to 48°C. All data were reduced to 25°C. by shift factors calculated from equations of the WLF form with the following coefficients: 1,2-polybutadiene, c1 = 6.23, c2 = 72.5; natural rubber, c1 = 5.94, c2 = 151.6. In the transition zone, the relative positions of the loss tangent curves on the logarithmic frequency scale for these and other rubbers (1,4-polybutadiene with 50% trans configuration; styrene-butadiene rubber with 23.5% styrene content; and polyisobutylene) provided relative measures of local segment mobility. At 25°C., these ranged over a factor of 3700 with 1,2-polybutadiene and polyisobutylene the lowest and 1,4-polybutadiene the highest. When the frequency scale of each rubber was reduced to a temperature 100°C. above its glass transition temperature, however, the loss tangent curves for all except polyisobutylene were nearly coincident; the latter still showed a lower mobility by a factor of about 1/800. The terminal relaxation time and steady-state compliance for the 1,2-polybutadiene calculated from the Rouse theory were larger than those observed experimentally. The level of compliance corresponding to the entanglement network of 1,2-polybutadiene, JeN, was calculated by integration over the loss compliance, J″, to be 1.62 × 10-7 cm.2/dyne; integration over G″ to obtain the corresponding modulus gave reasonable agreement. From such JeN, values, the average number of chain atoms between entanglement points, jZe, was estimated as follows: 1,2-polybutadiene, 132; natural rubber, 360; 1,4-polybutadiene, 110; styrene-butadiene rubber, 186; polyisobutylene, 320. Values of jZe were also estimated from the minimum in the loss tangent and compared with those reported from the molecular weight dependence of viscosity. The three sources were in generally good agreement.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/pol.1968.160060516
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  • 10
    Electronic Resource
    Electronic Resource
    Viscoelastic properties of crosslinked solutions of poly(β-hydroxyethyl methacrylate) in diethylene glycol. II. Dependence of creep compliance on concentration in the rubbery zone (1969)
    New York : Wiley-Blackwell
    Journal of Polymer Science Part A-2: Polymer Physics 7 (1969), S. 1681-1694 
    Details
    ISSN: 0449-2978
    Keywords: Physics ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Creep compliance data, J(t), at 35°C for poly(β-hydroxyethyl monomethacrylate), crosslinked by ethylene glycol dimethacrylate in a range of concentration C from 0.0855 to 2.053 × 10-4 mole/cm3 and swollen to various degrees in diluents, were examined for time-concentration superposition. From the dependence of time scale shift factors on v2, the volume fraction of polymer, free volume parameters were calculated for two samples with C = 0.0855 × 10-4 and 0.136 × 10-4 mole/cm3, swollen in the range of v2 from 0.134 to 0.591. Special attention was given to the magnitude of the shift factor on the log J(t) axis and its dependence on concentration, which was found to depend substantially on the crosslinking and the swelling degrees of the samples. This shift was approximately log v2 for lightly crosslinked samples, swollen to a small degree, measured in the neighborhood of the main transition. For higher degrees of crosslinking and/or swelling, the shift was much less and for the most highly crosslinked networks swollen to equilibrium it was even negative. The correction appears to be very sensitive to the strain of the effective chains and to the location on the time scale with respect to the transition and rubberlike zones of viscoelasic behavior. It was found that the parameters of the WLF equation calculated in our previous study from the time-temperature superposition of the creep curves in the rubber-glass transition are valid also for the rubberlike region.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/pol.1969.160071005
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