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  • 1
    ISSN: 0887-3585
    Keywords: X-ray crystallography ; pAR5 mutant ; allosteric enzyme ; ligand-induced negative cooperativity ; alternative amino acid conformations ; coordinate error ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: The X-ray crystal structure of CTP-ligated T state aspartate transcarbamoylase has been refined to an R factor of 0.182 at 2.5 Å resolution using the computer program X-PLOR. The structure contains 81 sites for solvent and has rms deviations from ideality in bond lengths and bond angles of 0.018 Å and 3.722°, respectively. The cytosine base of CTP interacts with the main chain carbonyl oxygens of rTyr-89 and rIle-12, the main chain NH of rIle-12, and the amino group of rLys-60. The ribose hydroxyls form polar contacts with the amino group of rLys-60, a carboxylate oxygen of rAsp-19, and the main chain carbonyl oxygen of rVal-9. The phosphate oxygens of CTP interact with the amino group of rLys-94, the hydroxyl of rThr-82, and an imidazole nitrogen of rHis-20. Recent mutagenesis experiments evaluated in parallel with the structure reported here indicate that alterations in the hydrogen bonding environment of the side chain of rAsn-111 may be responsible for the homotropic behavior of the pAR5 mutant of ATCase. The location of the first seven residues of the regulatory chain has been identified for the first time in a refined ATCase crystal structure, and the proximity of this portion of the regulatory chain to the allosteric site suggests a potential role for these residues in nucleotide binding to the enzyme. Finally, a series of amino acid side chain rearrangements leading from the R1 CTP allosteric to the R6 CTP allosteric site has been identified which may constitute the molecular mechanism of distinct CTP binding sites on ATCase. © 1993 Wiley-Liss, Inc.
    Additional Material: 16 Ill.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Zeitschrift für die chemische Industrie 108 (1996), S. 2158-2191 
    ISSN: 0044-8249
    Keywords: Enzymkatalyse ; Metallohydrolasen ; Katalyse ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Sowohl bei enzymatischen als auch bei nichtenzymatischen Katalysen sind zahlreiche Untersuchungen durchgeführt worden, um zu verstehen, wie Metallionen - besonders Zinkionen - die Hydrolyse von Phosphorsäureester- und Amidbindungen unterstützen. Hydrolasen mit einem Metallion im aktiven Zentrum, sogenannte mononucleare Metallohydrolasen, z. B. die Carboxypeptidase A oder Thermolysin, zählen zu den ersten Enzymen, deren Strukturen röntgenographisch aufgeklärt werden konnten. In den letzten Jahren wurden zunehmend mehr Metalloenzyme charakterisiert, in denen zwei oder mehrere benachbarte Metallionen die Katalyse von Phosphoryl- (ROPO3 + R′OH → R′OPO3 + ROH; im Fall der Phosphatasereaktion ist R′-OH ein Wassermolekül) und von Carbonyltransferreaktionen unterstützen, z. B. in Peptidasen und anderen Amidasen. Diese dinuclearen Metalloenzyme katalysieren enorm viele Reaktionen dieser Art: die hydrolytische Spaltung von Phosphorsäuremono-, di- und triesterbindungen, von Phosphorsäureanhydridbindungen sowie die Spaltung von Peptidbindungen oder Harnstoff. Auch die Bildung der Phosphodiesterbindung in RNA und DNA wird von Polymerasen über einen Zwei-Metallionen-Mechanismus katalysiert. Erstaunlich vielfältig sind auch die Strukturen der aktiven Zentren dieser di- oder trinuclearen Metalloenzyme, selbst für Enzyme, die sehr ähnliche Reaktionen katalysieren. Die Strukturbestimmung des aktiven und inaktivierten Enzyms mit gebundenem Substrat oder Produkt, einem stabilen Intermediat oder einem Analogon einer sich im Verlauf der Reaktion bildenden Zwischenstufe ist eine leistungsstarke Methode zur Aufklärung der mechanistischen Details der Enzymkatalyse. Strukturbestimmungen sind für viele der in diesem Artikel beschriebenen Metalloenzyme durchgeführt worden und liefern zusammen mit anderen biochemischen Untersuchungen einen immer besseren Einblick in die Fragestellung, wie die zwei (oder mehr) Metallionen zusammenwirken, um die Reaktionen effizient zu katalysieren.
    Additional Material: 34 Ill.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Chemie International Edition in English 36 (1997), S. 169-169 
    ISSN: 0570-0833
    Keywords: Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Chemie International Edition in English 35 (1996), S. 2024-2055 
    ISSN: 0570-0833
    Keywords: catalysis ; enzymatic catalysis ; metallohydrolases ; Catalysis ; Enzyme catalysis ; Metalloenzymes ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Numerous studies, both in enzymatic and nonenzymatic catalysis, have been undertaken to understand the way by which metal ions, especially zinc ions, promote the hydrolysis of phosphate ester and amide bonds. Hydrolases containing one metal ion in the active site, termed mononuclear metallohydrolases, such as carboxypeptidase. A and thermolysin were among the first enzymes to have their structures unraveled by X-ray crystallography. In recent years an increasing number of metalloenzymes have been identified that use two or more adjacent metal ions in the catalysis of phosphoryl-transfer reactions (R-OPO3 + R′-OH → R′-OPO3 + R-OH; in the case of the phosphatase reaction R′-OH is a water molecule) and carbonyl-transfer reactions, for example, in peptidases or other amidases. These dinuclear metalloenzymes catalyze a great variety of these reactions, including hydrolytic cleavage of phosphomono-, -di- and -triester bonds, phosphoanhydride bonds as well as of peptide bonds or urea. In addition, the formation of the phosphodiester bond of RNA and DNA by polymerases is catalyzed by a two-metal ion mechanism. A remarkable diversity is also seen in the structures of the active sites of these di- and trinuclear metalloenzymes, even for enzymes that catalyze very similar reactions. The determination of the structure of a substrate, product, stable intermediate, or a reaction coordinate analogue compound bound to an active or inactivated enzyme is a powerful approach to investigate mechanistic details of enzyme action. Such studies have been applied to several of the metalloenzymes reviewed in this article; together with many other biochemical studies they provide a growing body of information on how the two (or more) metal ions cooperate to achieve efficient catalysis.
    Additional Material: 34 Ill.
    Type of Medium: Electronic Resource
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