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  • 1
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 112 (1990), S. 86-93 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 103 (1995), S. 8166-8173 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The thermal motion of CD+4 in the gas phase at 4 and 40 K is studied by means of a molecular dynamics method using the MP2/6-31G(d,p) force field. The thermal motion of CD+4 in the temperature range from 4 to 40 K does not involve a deuterium permutation on the picosecond time scale. The electronic energy fluctuations of CD+4 due to thermal motion are less than 0.7 kcal/mol at 4 K and 1.6 kcal/mol at 40 K, which is less than the energy barrier (3.4 kcal/mol at MP2 level) required for the permutation between two energy minimum C2v structures. On the basis of these calculations it is suggested that the observation of four equivalent hydrogen atoms in the ESR spectrum of CH+4 can be attributed to fast quantum tunneling, with an estimated rate of 4.3×106 s−1 for CH+4 and 1.6×103 s−1 for CD+4. © 1995 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 101 (1994), S. 4103-4116 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The article describes molecular dynamics simulations of 4-n-pentyl-4'-cyanobiphenyl (5CB) in the nematic phase at 300 K using two interaction models. The first model comprises united atoms, while in the second, shorter simulation, the hydrogen atoms are explicitly included. Liquid crystalline order parameters were calculated using various definitions of molecular frames and were found to be in reasonable agreement with experiments. Distributions of dihedral angles and relative populations of various conformations in the alkyl chain have been determined. Translational and rotational diffusion processes were investigated using time correlation functions, and were compared with experimental results. Local order parameters, relevant for deuterium nuclear magnetic resonance (NMR) spectra, were determined for the segments in the alkyl chain. Proton NMR line shapes were calculated from the trajectory using an approximate method for determination of the dipole–dipole Hamiltonian matrix. These line shapes were found to be very sensitive to conformational distributions and therefore to the force field used in the simulation.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 104 (1996), S. 7261-7269 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A hybrid quantum mechanical molecular dynamics method is used to study liquid methanol at room temperature and normal density. Frequencies of the twelve vibrational modes are calculated from the simulation data at the ab initio Hartree–Fock/3-21G(d,p) level. Good overall agreement is found between the experimental and calculated frequencies. Three different, successive levels of quantum mechanical/molecular mechanical (QM/MM) coupling schemes are investigated using gas-to-liquid vibrational frequency shifts as a probe. The results suggest, somewhat surprisingly, that the method with the weakest QM/MM coupling gives the best overall agreement between the experimental and simulated results for vibrational frequency shifts. The most elaborate coupling scheme overestimates the shifts towards the red direction due to overestimation of the attractive interactions between quantum mechanical and molecular mechanical molecules, while it is found to be most successful in describing the O–H stretch. The effects of the solvent on the geometrical parameters of methanol are investigated in detail. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 99 (1995), S. 12686-12692 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 105 (1996), S. 8195-8203 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The thermal motion of the CCH radical embedded in a matrix of solid argon is simulated at 4 and 40 K, using a hybrid density functional theory—molecular dynamics (DFT-MD) approach. The DFT calculations are performed at the B3LYP/6-311G(d,p) level. It is concluded that the CCH molecule when embedded in the Ar matrix favors an oscillating, slightly bent geometric struct- ure, whereas in vacuum the molecule is linear. In the matrix at 4 K, the oscillations lie centered at a CCH bond angle of 170±5°. At 40 K far larger oscillations are noted (up to ±19° bending motion, centered at a 154° CCH angle), due to the increased thermal energy. As a consequence of the vibrational motion, the radical hyperfine structure becomes significantly modified, and agree far better with experimental data than do the linear optimized vacuum geometry results. The B3LYP/6-311G(d,p) computed vibrationally averaged isotropic couplings in an ordered Ar matrix at 4 K are 935, 173 and 42 MHz for C–C–H, respectively, to be compared with the experimental values (Ar matrix, 4 K) 902, 156 and 44 MHz, and the data for the B3LYP/6-311G(d,p) optimized linear structure in vacuum: 1043, 224 and 54 MHz. The present hybrid DFT-MD results also agree well with previous vibronically corrected MRDCI data. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 117 (1995), S. 392-400 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 113 (2000), S. 11264-11269 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Combined ab initio Hartree–Fock quantum mechanical/molecular mechanical (QM/MM) molecular dynamics simulations have been carried out for water at ambient and supercritical conditions. The QM/MM coupling potential is optimized for ambient water by scaling down the original MM charges in the MM potential model. Simulation results show that the modified QM/MM coupling potential behaves well in the studied water system. The evolution of the water structure from ambient to the supercritical conditions is studied and compared to the available experimental results. Our simulation results suggest that, at supercritical conditions, the data refined from the experiment by neutron diffraction with the isotopic substitution technique probably overestimate the hydrogen bonding interactions. © 2000 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 111 (1999), S. 7519-7525 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Combined quantum mechanical/molecular mechanical (QM/MM) molecular dynamics simulations have been carried out to study liquid water. The QM forces are evaluated at the Hartree–Fock level. The QM/MM coupling potentials, constructed from the flexible TIP3P Lennard-Jones parameters, and from those modified according to the corresponding QM/MM calculations of the water dimer, are examined based on the structure of liquid water, polarization effects of the QM water molecule from the surrounding classical MM water molecules, and the interactions between the QM molecule and the MM molecules. Our simulations show that when the flexible TIP3P Lennard-Jones parameters are used, the QM/MM coupling is too strong. However, when the Lennard-Jones parameters on the QM water molecule are modified according to the corresponding QM/MM calculations of the water dimer, the coupling between the QM water molecule and MM water molecules becomes too weak. In general, our work shows that the Lennard-Jones parameters on the QM atoms have a very large effect on the combined QM/MM simulation results. © 1999 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 108 (1998), S. 455-468 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Benzene, dissolved in several solvents of varying viscosities and as a neat liquid, is investigated using both MD simulation techniques and NMR spectroscopy. Molecular motions—linear translation, angular rotation and reorientational motion—are studied and related to intermolecular interactions and to the microscopic solvation structure obtained from MD simulation. Self-diffusion coefficients are measured by Fourier transform pulse-gradient spin–echo NMR techniques. The reorientational rotational motion of benzene is studied using 2H NMR T1 relaxation measurements. The 2H T1 measurements also include benzene in solvents: hexane, cyclohexane, chloroform, dodecane and hexadecane. A special emphasis is on the anisotropy of benzene. Attempts are made to interpret the anisotropic behavior in terms of specific solute–solvent interactions and the solvation structure around benzene. Concerning the three solvents—water, carbon tetrachloride and carbon disulfide—a fairly clear and consistent picture emerges from both experimental and theoretical studies. The reorientational motion of benzene is found to be highly anisotropic in water, slightly less anisotropic in carbon tetrachloride, while it is nearly isotropic in carbon disulfide solution. MD simulations show some evidence for hydrogens of water approaching the ring region of benzene. © 1998 American Institute of Physics.
    Type of Medium: Electronic Resource
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