Skip to main content
Log in

Quest for a reliable, valid, and sensitive in situ hybridization procedure to detect viral nucleic acids in the central nervous system

  • Original Articles
  • Published:
Neurochemical Research Aims and scope Submit manuscript

Sir Francis Bacon said: “Teaching maketh an exacting man”. WWT learned from Dr. Lowry that learning to do by doing and research make a correct person. Lord Kelvin said: “When you cannot measure it, When you cannot express it in numbers, You have scarcely, in your thoughts, Advanced to the stage of science, Whatever the matter may be.” Albert Szent-Gyorgi when asked how to be successful in research said: “It requires 4 things: 1)Brains with which to think 2)Eyes with which to see 3)Machines with which to measure 4)Money” Would Dr. Lowry have more to say? Yes, “Let's get to work.”

Abstract

In situ hybridization (ISH) to detect and to quantitate viral nucleic acid sequences in cryopreserved central nervous system (CNS) tissue is a reliable, valid and sensitive molecular technique. On the other hand, utilization of formaldehyde fixed paraffin embedded (FFPE) tissue to improve cytomorphology requires fundamental changes in the procedure since it is necessary to cleave the elaborate protein network cross-linked by formaldehyde using elevated concentration of proteinases in order to permit diffusion of complementary DNA probes to the targets (genomic viral nucleic acid sequences and/or viral mRNA). Adversely, this procedure hydrolized the proteinaceous glues generally used to fix tissue to glass slides resulting in loss of tissue sections during the ISH protocol. This report describes the application of a novel procedure utilizing a silano-organic compound to covalently bond to glass slides FFPE sections as well as cryopreserved tissue sections and cultured cells with and without virus infections. This covalent bonding procedure has permitted optimization of the ISH procedure for virus detection and quantification, especially for exploratory studies of specificity and wash stringency in relation to the Tm of the hybridized product. Progressive multifocal leucoencephalopathy (PML) caused by an opportunistic papovavirus (JC) was chosen because of the ready availability of tissue, stability of papovavirus nucleic acids, and specificity of3H-and35S-radiolabeled JC cloned DNA probes. Further, this laboratory is utilizing the optimized sensitive procedure to search for several virus etiologies in human diseases such as multiple sclerosis, temporal lobe epilepsy, Alzheimer's disease, schizophrenia, and Parkinson's disease, as well as normal aging. Fanally, the procedure permits study of 100% of thin serial sections; hence, alternate sections can be hybridized with sense and antisense riboprobes to detect viral genome and its mRNA or stained, immunocytochemically, to detect viral proteins. Accordingly, it is anticipated that the mechanism of persistent CNS viral infections will be deciphered, at least in part by advances in cytological molecular hybridization.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Adachi, A., Gendelman, H. E., Koenig, S., Folks, T., Willey, R., Rabson, A., and Martin, M. A. 1986. Production of AIDS-associated retrovirus in human and nonhuman cells transfected with an infections molecular clone. J Virol 59:284–291.

    Google Scholar 

  2. Arnold, A. P. 1981. Quantitative analysis of steroid autoradiograms. H Histochem Cytochem 29:297–211.

    Google Scholar 

  3. Brahic M., and Haase, A. T. 1978. Detection of viral sequences of low reiteration frequency by in situ hybridization. PNAS USA 75:6125–6129.

    Google Scholar 

  4. Brahic, M., Haase, A. T., and Cash, E. 1984. Simultaneous in situ detection of viral RNA and antigens. PNAS 81:5445–5448.

    Google Scholar 

  5. Brahie, M., Smith, R. A., Gibbs, C. J., Garruto, R. M., Tourtellotte, W. W., and Cash E. 1985. Detection of picornavirus sequences in nervous tissue of ALS and control patients. Ann Neurol 18:337–393.

    Google Scholar 

  6. Brigati, D. J., Myerson, D., Leary, J. J., Spalholz, B., Travis, S. Z., Fong, C. K. Y., Hsiung, G. D., and Ward, D. C. 1983. Detection of viral genomes in cultured cells and paraffin embedded tissue sections using biotin labeled hybridization probes. Virology 126:32–50.

    Google Scholar 

  7. Folks, T. M., Powell, D., Lightfoote, M., Koenig, S., Fauci, A. S., Benn, S., Rabson, A., Daugherty, D., Gendelman, H. E., Hoggan, M. D., Venkatesan, S., and Martin, M. A. 1986. Biological and biochemical characterization of a cloned leu-3′ cell surviving infection with AIDS retrovirus. J Exp med 164:280–290.

    Google Scholar 

  8. Haase, A. T., Brahic, M., Stowring, L., and Blum, H. 1984, Detection of viral nucleic acids by in situ hybridization. Methods in Virology 7:189–226.

    Google Scholar 

  9. Haase, A. T., Gantz, D., Blum, H., Stowring, L., Ventura, P., Geballe, A., Moyer, B., Brahic, M. 1985. Combined macroscopic and microscopic detection of viral genes in tissues. Virology 140:201–206.

    Google Scholar 

  10. Haase, A. T., Pagano, J., Waksman, B., and Nathanson, N. 1984. Detection of viral genes and their products in chronic neurological diseases. Ann of Neurol 15:119–121.

    Google Scholar 

  11. Haase, A. T., Stowring, L., Ventura, P., Burks, J., Ebers, G., Tourtellotte, W. W., and Warren, K. 1984. Detection of hybridization of viral infection of the human CNS. Ann NY Acad Sci 436:103–108.

    Google Scholar 

  12. Haase, A. T., Stowring, L., Ventura, P., Johnson, K. P., Norrby, E., Gibbs, C. J. 1981. Measles virus genome in infections of the CNS. J inf. Dis 144:154–160.

    Google Scholar 

  13. Haase, A. T., Ventura, P., Gibbs, C. J., Tourtellotte, W. W. 1981b, Measles virus nucleotide sequences: Detection by hybridization in situ. Science 212:672–676.

    Google Scholar 

  14. Maniatis, T., Fritsch, E. F., and Sambrook, J. 1982. Molecular Cloning. A Laboratory Manual (Cold Spring Harbor Laboratories, NY.

    Google Scholar 

  15. Maples, J. A. 1985. A method for the covalent attachment of cells to glass slides for use in immunohistochemical assays. AJCP 83:356.

    Google Scholar 

  16. Rigby, P. W. J., Dieckmann, M., Rhodes, C., and Berg, P. 1977. Labeling DNA to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol 113:237–251.

    Google Scholar 

  17. Shapshak, P., Graves, M. C., and Imagawa, D. T. 1982. Polypeptides of CDV strains derived from dogs with chronic neurological diseases. Virology 122:158–170.

    Google Scholar 

  18. Shapshak, P., Tourtellotte, W. W., Nakamura, S., Graves, M. C., Darvish, M., Hoffman, D., Walsh, M. J., Fareed, G. C., Schmid, P., Heinzmann, C., Sidhu, K., Bedows, E., Rozenblatt, S., Berry, K., and Hawkins, S. 1985. SSPE: measles virus matrix protein nucleic acid sequences detected by in situ hybridization. Neurology 35:1605–1609.

    Google Scholar 

  19. Shapshak, P., Tourtellotte, W. W., Wolman, M., Verity, N., Verity, M. A., Schmid, P., et al.: 1986. Search for virus nucleic acid sequences in post-mortem human brain tissue using in situ hybridization technology with cloned probes: Some solutions and results on progressive multifocal leukoencephalopathy and subacute sclerosing panencephalitis. J Neurosci Res 16:218–301.

    Google Scholar 

  20. Shaw, G., M., Harper, M. E., Hahan, B. H., Epstein, L. G., Gajdusek, D. C., Price, R. W., Navia, B. A., Petito, C. K., O'Hara, C. J., Groopman, J. E., Cho, E. S., Oleske, J. M., Wong-Staal, F., and Gallo, R. C. 1985. HTLV-III infection in brains of children and adults with AIDS encephalopathy. Science 227:177–182.

    Google Scholar 

  21. Tourtellotte, W. W., Itabashi, H. H., Rosario, I., Berman, K. 1984. The NNRB: A collection of cryopreservaed human neurological speciments for neuroscientists. Pages 67–78, in Alvord, E. C. Jr., Kies, M. W., and Suckling, A. J. (eds.). Experimental Allergic Encephalomyelitis. A Useful Model for Multiple Sclerosis. Progress in Clinical and Biological Research. Volume 146 A. R. Liss Inc., New York.

    Google Scholar 

  22. Tourtellotte, W. W., Shapshak, P., et al. 1984, Search for viral nucleic acid sequences in the human central nervous system.in Proceedings of the 25th Anniversary of the Belgian Multiple Sclerosis Society, 463–469.

  23. Tourtellotte, W. W., Schmid, P., and Shapshak, P. 1987, Detection of viral nucleic acids in the central nervous system: A progress report.in Uhl, G. R. A. (ed), In Situ Hybridization in Brain. Plenum Press, (in press).

  24. Tourtellotte, W. W., Schmid, P., Verity, A. N., Shapshak, P., Martinez, S. 1987, Preparation of silanated glass microscope slides for the covalent binding of formalin fixed paraffin embedded tissue. In Uhl, G. R., (ed), In Situ Hybridization in Brain. Plenum Press.

  25. Tourtellotte, W. W., Shapshak, P., Verity, A. N., Schmid, P., and Martinez, S. 1987, Optimized in situ hybridization protocol.in Uhl, G. R., (ed), In Situ Hybridization in Brain. Plenum Press.

  26. Tourtellotte, W. W., Schmid, P., Verity, A. N., Martinez, S. G., Pick, P. W., Shapshak, P. 1987, Covalent bonding of tissue to glass slides with preservation of morphology. Submitted.

  27. Tourtellotte, W. W., Verity, A. N., Schmid, P., Adhami, F., Martinez, S., Shapshak, P. 1987, Covalent binding of formalin fixed paraffin embedded brain tissue sections to glass slides suitable for in situ hybridization. J Virol Meth, in press.

Download references

Author information

Authors and Affiliations

Authors

Additional information

Special Issue dedicated to Dr. O. H. Lowry.

Grant support: In part, VA Merit Dunds, Kroc Foundation, and NIH (1P01 NS22890-01.).

Rights and permissions

Reprints and permissions

About this article

Cite this article

Tourtellotte, W.W., Schmid, P., Pick, P. et al. Quest for a reliable, valid, and sensitive in situ hybridization procedure to detect viral nucleic acids in the central nervous system. Neurochem Res 12, 565–571 (1987). https://doi.org/10.1007/BF01000242

Download citation

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF01000242

Key Words

Navigation