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Cloning and nucleotide sequencing of the genes for ribosomal proteins S9 (rpsI) and L13 (rplM) of Escherichia coli

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Summary

The genes for the ribosomal proteins S9 (rpsI) and L13 (rplM) of Escherichia coli have been cloned into a λ phage vector termed L47.1. The two genes were identified by infecting UV-light irradiated cells with the resultant phages and analyzing the protein products by two-dimensional gel electrophoresis. Suitable DNA fragments of the isolate were cloned subsequently into M13 phage vectors and their nucleotide sequence was determined by the dideoxy method. It is evident that the two genes form a transcriptional unit, the rplM gene being promoter-proximal. There is a typical signal sequence for transcriptional termination after the rpsI gene. The codon usage pattern in the two genes is similar to other ribosomal protein genes of E. coli.

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References

  • Byström AS, Hjalmarsson KJ, Wilkström PM, Björk BG (1983) The nucleotide sequence of an Escherichia coli operon containing genes for the tRNA (m1G) methyltransferase, the ribosomal proteins S16 and L19 and a 21-K polypeptide. EMBO J 2:899–905

    PubMed  Google Scholar 

  • Cerretti DP, Dean D, Davis GR, Bedwell DM, Nomura M (1983) The spc ribosomal protein operon of Escherichia coli: Sequence and cotranscription of the ribosomal protein genes and a protein export gene. Nucl Acids Res 9:2599–2616

    Google Scholar 

  • Chen R, Wittmann-Liebold B (1975) The primary structure of protein S9 from the 30S subunit of Escherichia coli ribosomes. FEBS Lett 52:139–140

    Article  PubMed  Google Scholar 

  • Dabbs ER (1983) Escherichia coli kasugamycin dependence arising from mutation at the rpsI locus. J Bacteriol 153:709–715

    Google Scholar 

  • Hardy SJS, Kurland CG, Voynow P, Mora G (1969) The ribosomal proteins of Escherichia coli. I. Purification of the 30S proteins. Biochemistry 8:2897–2905

    PubMed  Google Scholar 

  • Isono K (1979) Genetics of ribosomal proteins and their modifying and processing enzymes in Escherichia coli. In: Ribosomes: Structure, function and genetics (G Chambliss et al. eds) pp 641–669. University Park Press, Baltimore

    Google Scholar 

  • Isono K (1984) A computer program package for storing and retrieving DNA/RNA and protein sequence data. Nucl Acids Res 12:101–112

    PubMed  Google Scholar 

  • Jaskunas SR, Fallon AM, Nomura M (1977) Identification and organization of ribosomal protein genes of Escherichia coli carried by fus2 transducing phage. J Biol Chem 252:7323–7336

    Google Scholar 

  • Kaltschmidt E, Wittmann HG (1970) Ribosomal proteins. VII. Two dimensional polyacrylamide gel electrophoresis for finger-printing of ribosomal proteins. Analyt Biochem 36:401–412

    PubMed  Google Scholar 

  • Kitakawa M, Blumenthal L, Isono K (1980) Isolation and characterization of specialized transducing phages carrying ribosomal protein genes of Escherichia coli. Mol Gen Genet 180:343–349

    PubMed  Google Scholar 

  • Lee JS, An G, Friesen JD, Isono K (1981) Cloning and the nucleotide sequence of the genes for Escherichia coli ribosomal proteins L28 (rpmB) and L33 (rpmG). Mol Gen Genet 184:218–223

    Google Scholar 

  • Loenen WAM, Brammar WJ (1980) A bacteriophage lambda vector for cloning large DNA fragments made with several restriction enzymes. Gene 20:249–259

    Article  Google Scholar 

  • Maniatis T, Tritsch EF, Sambrook J (1982) Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory

  • Mende L (1978) The primary structure of protein L13 from the large subunit of Escherichia coli ribosomes. FEBS Lett 96:313–316

    Article  PubMed  Google Scholar 

  • Messing J, Crea R, Seeburg PH (1981) A system for shotgun DNA sequencing. Nucl Acids Res 9:309–321

    PubMed  Google Scholar 

  • Murray NE, Brammar WJ, Murray K (1977) Lamboid phages that simplify the recovery of in vitro recombinants. Mol Gen Genet 150:53–61

    PubMed  Google Scholar 

  • Nomura M, Course R, Baughman G (1984) Regulation of the synthesis of ribosomes and ribosomal components. Annu Rev Biochem 53:75–117

    Article  PubMed  Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-termination inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    PubMed  Google Scholar 

  • Siebenlist U, Simpson RB, Gilbert W (1980) E. coli RNA polymerase interacts homologously with two different promoters. Cell 20:269–281

    Article  PubMed  Google Scholar 

  • Zurawski G, Brown KD (1979) Ribosomal RNA genes in the 56 minute region of the Escherichia coli chromosome. J Mol Biol 130:83–96

    PubMed  Google Scholar 

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Communicated by A. Böck

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Isono, S., Thamm, S., Kitakawa, M. et al. Cloning and nucleotide sequencing of the genes for ribosomal proteins S9 (rpsI) and L13 (rplM) of Escherichia coli . Molec. Gen. Genet. 198, 279–282 (1985). https://doi.org/10.1007/BF00383007

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  • DOI: https://doi.org/10.1007/BF00383007

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