Summary
Sequencing data indicated that the RNA polymerase (σ43) operon of Bacillus subtilis consisted of three genes, P23 (function unknown), dnaE (DNA primase), and rpoD (σ43) (Wang and Doi 1986a). S1 nuclease mapping experiments with RNA from various stages of growth demonstrated the presence of two overlapping σ43 promoters that controlled the expression of the operon during growth and a σ37 promoter that regulated the expression of the operon during the sporulation phase. This promoter switching mechanism ensured that this important operon would be expressed during different nutritional states of the cell and also illustrated a function for the minor RNA polymerase σ37 holoenzyme in the expression of genes which are normally expressed during the logarithmic phase of growth. The location of the transcription termination signal confirmed that the σ43 operon consists of three genes.
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References
Berk AJ, Sharp PA (1977) Spliced early mRNAs of simian virus 40. Cell 12:721–732
Brosius J, Sleeter DD, Noller HF (1981) Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148:107–127
Burton Z, Burgess RR, Lin J, Moore D, Holder S, Gross CA (1981) The nucleotide sequence of the cloned rpoD gene for the RNA polymerase sigma subunit from E. coli K12. Nucleic Acids Res 9:2889–2903
Burton ZF, Gross CA, Watanabe KK, Burgess RR (1983) The operon that encodes the sigma subunit of RNA polymerase also encodes ribosomal protein S21 and the DNA primase in Escherichia coli K12. Cell 32:335–349
Doi RH, Wang LF (1986) Multiple procaryotic RNA polymerase sigma factors. Microbiol Rev 50:227–243
Gilman MZ, Chamberlin MJ (1983) Developmental and genetic regulation of the Bacillus subtilis genes transcribed by 28-RNA polymerase. Cell 35:285–293
Gitt MA, Wang LF, Doi RH (1985) A strong sequence homology exists between the major RNA polymerase σ factors of Bacillus subtilis and Escherichia coli. J Biol Chem 260:7178–7185
Johnson WC, Moran CP Jr, Losick R (1983) Two RNA polymerase sigma factors from Bacillus subtilis discriminate between overlapping promoters from a developmentally regulated gene. Nature 302:800–804
Kawamura F, Doi RH (1984) Construction of a Bacillus subtilis double mutant deficient in extracellular alkaline and neutral proteases. J Bacteriol 157:965–967
Kawamura F, Wang LF, Doi RH (1985) Catabolite resistant sporulation (crsA) in the Bacillus subtilis RNA polymerase σ43 gene (rpoD) can suppress and be suppressed by mutations in the spoO genes. Proc Natl Acad Sci USA 82:8124–8128
Leighton TJ, Doi RH (1971) The stability of messenger ribonucleic acid during sporulation in Bacillus subtilis. J Biol Chem 246:3189–3195
Losick R, Pero J (1981) Cascades of sigma factors. Cell 25:582–584
Losick R, Sonenshein AL (1969) Change in the template specificity of RNA polymerase during sporulation of Bacillus subtilis. Nature 224:35–37
Lupski JR, Smiley BL, Godson GN (1983) Regulation of the rpsU-dnaG-rpoD macromolecular synthesis operon and the initiation of DNA replication in Escherichia coli K12. Mol Gen Genet 189:48–57
Lupski JR, Ruiz AA, Godson GN (1984) Promotion, termination and anti-termination in the rpsU-dnaG-rpoD macromolecular synthesis operon of E. coli K12. Mol Gen Genet 195:391–401
Maniatis R, Fritsch EF, Sambrook J (1982) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Maxam AM, Gilbert W (1980) Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol 65:499–560
Moran CP, Lang N, LeGrice S, Lee G, Stephens M, Sonenshein A, Pero J, Losick R (1982) Nucleotide sequences that signal the initiation of transcription and translation in Bacillus subtilis. Mol Gen Genet 186:339–346
Price CW, Doi RH (1985) Genetic mapping of rpoD implicates the major sigma factor of Bacillus subtilis RNA polymerase in sporulation initiation. Mol Gen Genet 201:88–95
Price CW, Gitt MA, Doi RH (1983) Isolation and physical mapping of the gene encoding the major σ factor of Bacillus subtilis RNA polymerase. Proc Natl Acad Sci USA 80:4074–4078
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467
Smiley BL, Lupski JR, Svec PS, McMacken R, Godson GN (1982) Sequences of the Escherichia coli dnaG primase gene and regulation of its expression. Proc Natl Acad Sci USA 79:4550–4554
Sumida-Yasumoto C, Doi RH (1974) Transcription from the complementary deoxyribonucleic acid strands of Bacillus subtilis during various stages of sporulation. J Bacteriol 117:775–782
Wang LF, Doi RH (1986a) Nucleotide sequence and organization of Bacillussubtilis RNA polymerase major sigma (σ43) operon. Nucleic Acids Res 14:4293–4307
Wang LF, Doi RH (1986b) Organization of the major sigma operons of Bacillus subtilis and Escherichia coli. In: Ganesan AT, Hoch JA (eds) Bacillus molecular genetics and biotechnology applications, vol. 2. Academic Press, New York pp 367–376
Wang LF, Price CW, Doi RH (1985) Bacillus subtilis dnaE encodes a protein homologous to DNA primase of Escherichia coli. J Biol Chem 260:3368–3372
Wang PZ, Doi RH (1984) Overlapping promoters transcribed by Bacillus subtilis σ55 and σ37 RNA polymerase holoenzymes during growth and stationary phases. J Biol Chem 259:8619–8625
Wong SL, Doi RH (1986) Determination of the signal peptidase cleavage site in the preprosubtilisin of Bacillus subtilis. J Biol Chem 261:10176–10181
Wong SL, Price CW, Goldfarb DS, Doi RH (1984) The subtilisin E gene of Bacillus subtilis is transcribed from a σ37 promoter in vivo. Proc Natl Acad Sci USA 81:1184–1188
Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103–119
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Wang, LF., Doi, R.H. Promoter switching during development and the termination site of the σ43 operon of Bacillus subtilis . Mol Gen Genet 207, 114–119 (1987). https://doi.org/10.1007/BF00331498
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DOI: https://doi.org/10.1007/BF00331498