Abstract
We describe here the crystal structure of the trichosanthin-NADPH complex determined at a resolution of 1.7 Å. The adenine base stacks between Tyr 70 and Tyr 111. Arg 163, Glu 160 and Tyr 70 form hydrogen bonds to N(3), O(3′) and, through a water molecule, to N(9) of adenosine, respectively. This is the first high resolution structure of a complex between a ribosome-inactivating protein and a substrate analogue, in which the electron density of the N-glycosidic bond is well defined and the preassociated water, thought to be responsible for hydrolyzing the N-C bond, is also explicitly elucidated.
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References
Wang, Y. et al. Scientific evaluation of Tian Hua Fen (THF)—history, chemistry and application. Pure, appl. Chem. 58, 789–798 (1986).
McGrath, M.S. et al. An inhibitor of human immunodeficiency virus replication in acutely and chronically infected cells of lymphocyte and mononuclear phagocyte lineage. Proc. Natn. Acad. Sci. U.S.A. 86, 2844–2848 (1989).
Barbieri, L. & Stirpe, F. Ribosome-inactivating proteins from plants: properties and possible uses. Cancer Surv. 1, 489–520 (1982).
Stirpe, F. & Barbieri, L. Ribosome-inactivating proteins up to date. FEBS Lett. 195, 1–8 (1986).
Roberts, W.K. & Selitrennikoff, C.P. Plant proteins that inactivate foreign ribosomes. Biosci. Rep. 6, 19–29 (1986).
Lee-Huang, S. et al. MAP30: a new inhibitor of HIV-I infection and replication. FEBS Lett. 272, 12–18 (1990).
Dai, R.-x. et al. Studies on injury-mechanism of trichosanthin on trophoblast cells and choriocarcinoma cells in culture. Acta biologiae experimental sinica 26, 411–427 (1993).
Olsnes, S. & Pihl, A. in Molecular action of toxins and viruses (eds Cohen, P. & Van Heyningen, S.) 51–105 (Elsevier, Amsterdam, New York; 1982).
Endo, Y. & Tsurugi, K. RNA N-glycosidase activity of ricin A-chain. J. biol. Chem. 262, 8128–8130 (1987).
Zhang, J.-S. & Liu, W.-Y. The mechanism of action of trichosanthin on eukaryotic ribosomes—RNA N-glycosidase activity of the cytotoxin. Nucleic Acids Res. 20, 1271–1275 (1992).
Katzin, B.J., Collins, E.J. & Robertus, J.D. Structure of ricin A-chain at 2.5A. Proteins 10, 251–259 (1991).
Xia, Z.-X., Zhang, L., Zhang, Z.-M., Wu, S. & Dong, Y.-C. The three-dimensional structure of trichosanthin refined at 2.7A resolution. Chinese J. Chem. 11, 280–288 (1993).
Gao, B., Ma, X.-Q., Wang, Y.-P., Wu, S., Chen, S.-Z. & Dong, Y.-C. The structural determination and refinement of trichosanthin at 1.73A resolution. Science in China B 23 (Chinese edition), 273–282 (1993).
Pan, K.-Z. et al. The crystal and molecular structure of trichosanthin at 2.6A resolution. Science in China B 36, 1071–1081 (1993).
Ren, J., Wang, Y., Dong, Y. & Stuart, D. The N-glycosidase mechanism of ribosome-inactivating proteins implied by crystal structure of a-momorcharin. Structure 2, 7–16 (1994).
Monzingo, A.F. & Robertus, J.D. X-ray analysis of substrate analogs in the ricin A-chain active site. J. molec. Biol. 227, 1136–1145 (1992).
Xiong, J.-P., Zhang, L., Xia, Z.-X. & Wang, Y. Int Union Crystallogr. Congress Abstr., 100 (1993).
Funatsu, G., Islam, M.R., Minami, Y., Sung-Sil, K. & Kimura, M. Conserved amino acid residues in ribosome-inactivating proteins from plants. Biochimie 73, 1157–1161 (1991).
Ready, M.P., Kim, Y. & Robertus, J.D. Site directed mutagenesis of ricin A chain and implications for the mechanism of action. Proteins 10, 270–278 (1991).
Frankel, A., Welsh, P., Richardson, J. & Robertus, J.D. The role of arginine 180 and glutamic acid 177 of ricin toxin A-chain in the enzymatic inactivation of ribosomes. Molec. Cell Biol. 10, 6257–6263 (1990).
Saenger, W. Structure and function fo nucleosides and nucleotides. Angew. Chem. Int. Ed. 12, 591–601 (1973).
Reddy, B.S., Saenger, W., Muhlegger, K. & Weimnn, G. Crystal and molecular structure of the lithium salt of nicotinamide adenine dinucleotide dihydrate (NAD+, DPN+, cozymase, codehydrase I). J. Am. chem. Soc. 103, 907–914 (1981).
Wang, J.H., Wang, Y.P. & Tian, G.Y. A new crystal form of trichosanthin. Kexue Tongbao 30, 1396–1398 (1985).
Fitzgerald, P. M. An integrated package of computer programs for the determination of crystal structures by molecular replacement. J. appl. Crystallogr. 21, 273–278 (1988).
Hendrickson, W.A. Meth. Enzymol. 252–270 (1985).
Finzel, B.C. Incorporation of fast Fourier transforms to speed restrained least-squares refinement of protein structures. J. appl. Crystallogr. 20, 53–55 (1987).
Jones, T.A. A graphics model building and refinement system for macromolecules. J. appl. Crystallogr. 11, 268–272 (1978).
Cambillau, C. & Horjalus, E. TOM: a FRODO subpackage for protein-ligand fitting with interactive energy minimization. J. molec. Graphics 5, 174–178 (1987).
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Xiong, JP., Xia, ZX. & Wang, Y. Crystal structure of trichosanthin-NADPH complex at 1.7Å resolution reveals active-site architecture. Nat Struct Mol Biol 1, 695–700 (1994). https://doi.org/10.1038/nsb1094-695
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DOI: https://doi.org/10.1038/nsb1094-695
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