Skip to main content
Log in

Citrate lyase from Rhodopseudomonas gelatinosa: Purification, electron microscopy and subunit structure

  • Published:
Archives of Microbiology Aims and scope Submit manuscript

Abstract

  1. 1.

    Citrate lyase (EC 4.1.3.6) from Rhodopseudomonas gelatinosa has been purified to homogeneity by protamine sulfate fractionation, chromatography on DEAE-Cellulose and gel filtration. The final enzyme preparation had a specific activity of 138 units per mg of protein and was purified 43-fold over the crude extract. Analysis of citrate lyase by sedimentation equilibrium experiments and gel filtration gave molecular weights of 530000 and 560000, respectively.

  2. 2.

    Electron microscopic investigations of negatively stained enzyme molecules and image analysis showed that citrate lyase is composed of six large and six small subunits; they are arranged in two hexagonal rings lying face to face, each containing, in alternating sequence, three large and three small subunits. The enzyme molecule is 160 Å in diameter and about 100 Å thick.

  3. 3.

    Treatment with sodium dodecylsulfate and mercaptoethanol dissociated citrate lyase into three proteins. Protein III (small subunit) had a molecular weight of 30000 and contained the pantothenate; protein II (large subunit) had a molecular weight of 61000; protein I (M r =97000) was probably an aggregate of II and III.

  4. 4.

    Based on the results obtained a model of citrate lyase was constructed.

  5. 5.

    Purified citrate lyase was obtained from R. gelatinosa in a deacetylated and largely oxidized form. The enzyme was activated by reduction with dithiothreitol (3 mM) and subsequent acetylation with acetic anhydride (1.75 mM).

  6. 6.

    The enzyme was subject to reaction inactivation, the extent of which depended on the concentration of Mg2+.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Andrews, P.: Estimation of the molecular weights of proteins by Sephadex gel filtration. Biochem. J. 91, 222–233 (1964)

    Google Scholar 

  • Bowen, T. J., Mortimer, M. G.: Sub-units of citrate oxaloacetate lyase. Europ. J. Biochem. 23, 262–266 (1971)

    Google Scholar 

  • Buckel, W., Buschmeier, V., Eggerer, H.: Der Wirkungsmechanismus der Citrat-Lyase aus Klebsiella aerogenes. Hoppe Seylers Z. physiol Chem. 352, 1195–1205 (1971)

    Google Scholar 

  • Buckel, W., Eggerer, H.: Acetyl-phosphopantethein und Acetyl-CoA als Wirkungsgruppen der Citrat-Lyase. Hoppe Seylers Z. physiol. Chem. 353, 1506 (1972)

    Google Scholar 

  • Buckel, W., Ziegert, K., Eggerer, H.: Acetyl-CoA-dependent cleavage of citrate on inactivated citrate lyase. Europ. J. Biochem. 37, 295–304 (1973)

    Google Scholar 

  • Dagley, S.: Citrate-lyase. In: Methods in enzymology, J. M. Lowenstein, ed., Vol. XIII, pp. 160–179. New York-London: Academic Press 1969

    Google Scholar 

  • Dimroth, P., Dittmar, W., Walther, G., Eggerer, H.: The acyl-carrier protein of citrate lyase. Europ. J. Biochem. 37, 305–315 (1973)

    Google Scholar 

  • Ellman, G. L.: Tissue sulfhydryl groups. Arch. Biochem. Biophys. 82, 70–77 (1959)

    Google Scholar 

  • Giffhorn, F., Beuscher, N., Gottschalk, G.: Regulation of citrate lyase activity in Rhodopseudomonas gelatinosa. Biochem. biophys. Res. Commun. 49, 467–471 (1972)

    Google Scholar 

  • Griffith, J. P.: Immediate visualization of proteins in dodecyl sulfate-polyacrylamide gels by prestaining with remazol dyes. Analyt. Biochem. 46, 402–412 (1972)

    Google Scholar 

  • Horne, R. W., Greville, G. D.: Observation on ox-liver l-glutamate dehydrogenase with the electron microscope. J. molec. Biol. 6, 506–509 (1963)

    Google Scholar 

  • Koenig, R., Stegemann, H., Francksen, H., Paul, H. L.: Protein subunits in the Potato virus X group. Determination of the molecular weights by polyacrylamide electrophoresis. Biochim. biophys. Acta (Amst.) 207, 184–189 (1970)

    Google Scholar 

  • Lowry, O. H., Rosebrough, N. J., Farr, A. L., Randall, R. J.: Protein measurement with the folin-phenol reagent. J. biol. Chem. 193, 265–275 (1951)

    Google Scholar 

  • Mahadik, S. P., Siva Raman, C.: Citrate lyase: Molecular weight and subunit structure. Biochem. biophys. Res. Commun. 32, 167–171 (1968)

    Google Scholar 

  • Markham, R., Frey, S., Hills, G. J.: Methods for the enhancement of image detail and accentuation of structure in electron microscopy. Virology 20, 88–102 (1963)

    Google Scholar 

  • Maurer, H. R.: Disk-Elektrophorese, p. 42. Berlin: W. de Gruyter 1968

    Google Scholar 

  • Media for the Microbiological Assay of Vitamins and Amino Acids. Difco Laboratories, Detroit (Mich.) pp. 38–39 (1971)

  • Moellering, H., Gruber, W.: Determination of citrate with citrate lyase. Analyt. Biochem. 17, 369–378 (1966)

    Google Scholar 

  • Peacock, A. C., Dingman, C. W.: Molecular weight estimation and separation of ribonucleic acid by electrophoresis in agarose-acrylamide composite gels. Biochemistry 7, 668–674 (1968)

    Google Scholar 

  • Pugh, E. L., Wakil, S. J.: Studies on the mechanism of fatty acid synthesis. J. biol. Chem. 240, 4727–4733 (1965)

    Google Scholar 

  • Schaab, Ch., Giffhorn, F., Schoberth, S., Pfennig, N., Gottschalk, G.: Phototrophic growth of Rhodopseudomonas gelatinosa on citrate; accumulation and subsequent utilization of cleavage products. Z. Naturforsch. 27b, 962–967 (1972)

    Google Scholar 

  • Singh, M., Srere, P. A.: The reaction inactivation of citrate lyase from Aerobacter aerogenes. J. biol. Chem. 246, 3847–3850 (1971)

    Google Scholar 

  • Srere, P. A., Böttger, B., Brooks, G. C.: Citrate lyase: A pantothenate containing enzyme. Proc. nat. Acad. Sci. (Wash.) 69, 1201–1202 (1972)

    Google Scholar 

  • Valentine, R. C., Shapiro, B. M., Stadtman, E. R.: Regulation of glutamine synthetase. XII. Electron microscopy of the enzyme from E. coli. Biochemistry 7 2143–2152 (1968)

    Google Scholar 

  • Van Holde, K. E., Baldwin, R. L.: Rapid attainment of sedimentation equilibrium. J. physic. Chem. 62, 734–743 (1958)

    Google Scholar 

  • Weber, K., Osborn, M.: The reliability of molecular weight determination by dodecyl sulfate-polyacrylamide gel electrophoresis. J. biol. Chem. 244, 4406–4412 (1969)

    Google Scholar 

  • Weber, K., Pringle, J. R., Osborn, M.: Measurement of molecular weights by electrophoresis on SDS-acrylamide gels. In: Methods in enzymology, C. H. W. Hirs, S. N. Timasheff, eds., Vol. XXVI, pp. 3–27. New York-London: Academic Press 1972

    Google Scholar 

  • Weckesser, J., Drews, G., Tauschel, H. D.: Zur Feinstruktur und Taxonomie von Rhodopseudomonas gelatinosa. Arch. Mikrobiol. 65, 346–358 (1969)

    Google Scholar 

  • Zipper, P., Kratky, O., Herrmann, R., Hohn, Th.: An X-ray small angle study of bacteriophages fr and R17. Europ. J. Biochem. 18, 1–9 (1971)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Beuscher, N., Mayer, F. & Gottschalk, G. Citrate lyase from Rhodopseudomonas gelatinosa: Purification, electron microscopy and subunit structure. Arch. Microbiol. 100, 307–328 (1974). https://doi.org/10.1007/BF00446325

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00446325

Key words

Navigation