Skip to main content
Log in

The nucleotide sequence of an Escherichia coli chromosomal region containing the genes for ribosomal proteins S6, S18, L9 and an open reading frame

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

The DNA sequence of a cluster of genes for ribosomal proteins S6 (rpsF), S18 (rpsR) and L9 (rplI), and of their surrounding regions was determined. The order of the genes was established as promoter-rpsF-rpsR-rplI. There is a 315 bp open reading frame that begins seven nucleotides after the end of rpsF and ends immediately before rpsR. Based on the data of insertional mutagenesis experiments with transposon γδ, we concluded that these genes probably form an operon. The amino acid sequence deduced from the nucleotide sequence of the genes agrees completely with the published amino acid sequence data for protein S6, but there are discrepancies in the case of proteins S18 and L9. The C-terminus of protein S6 was deduced to end with two Glu residues, suggesting that the other Glu residues previously found in this protein are added post-translationally as has been predicted (Reeh and Pedersen 1979). A possible secondary structure in the leader sequence as well as a possible transcriptional terminator after rplI were noticed in the sequence.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Davis RW, Botstein D, Roth JR (1980) Advanced Bacterial Genetics. Cold Spring Harbor Laboratory, New York, USA

    Google Scholar 

  • Fallon AM, Jinks CS, Yamamoto M, Nomura M (1979) Expression of ribosomal protein genes cloned in a hybrid plasmid in Escherichia coli: Gene dosage effects on synthesis of ribosomal proteins and ribosomal protein messenger RNA. J Bacteriol 138: 383–396

    Google Scholar 

  • Geyl D, Böck A, Isono K (1981) An improved method for two-dimensional gel-electrophoresis: Analysis of mutationally altered ribosomal proteins of Escherichia coli. Mol Gen Genet 181: 309–312

    Google Scholar 

  • Guyer MS (1978) The γδ sequence of F is an insertion sequence. J Mol Biol 126: 347–365

    Google Scholar 

  • Hitz H, Schaefer D, Wittmann-Liebold B (1975) Primary structure of ribosomal protein S6 from the wild type and a mutant of Escherichia coli. FEBS Lett 56: 259–262

    Google Scholar 

  • Isono K (1984) A computer program package for storing and retrieving DNA/RNA and protein sequence data. Nucleic Acids Res 12: 101–112

    Google Scholar 

  • Isono K, Cumberlidge AG, Isono S, Hirota Y (1977) Further temperature-sensitive mutants of Escherichia coli with altered ribosomal proteins. Mol Gen Genet 152: 239–243

    Google Scholar 

  • Isono K, Isono S (1980) Ribosomal protein modification in Escherichia coli, II. Studies of a mutant lackin the N-terminal acetylation of protein S18. Mol Gen Genet 177: 645–651

    Google Scholar 

  • Isono K, Kitakawa M (1978) Cluster of ribosomal protein genes in Escherichia coli containing genes for proteins S6, S18 and L9. Proc Natl Acad Sci USA 75: 6163–6167

    Google Scholar 

  • Isono K, Krauss J, Hirota Y (1976) Isolation and characterization of temperature-sensitive mutants of Escherichia coli with altered ribosomal proteins. Mol Gen Genet 149: 297–302

    Google Scholar 

  • Isono S, Isono K, Hirota Y (1978) Mutations affecting the structural genes and genes coding for modifying enzymes for ribosomal proteins in Escherichia coli. Mol Gen Genet 165: 15–20

    Google Scholar 

  • Isono S, Thamm S, Kitakawa M, Isono K (1985) Cloning and nucleotide sequencing of the genes for ribosomal proteins S9 (rpsI) and L13 (rplM) of Escherichia coli. Mol Gen Genet 198: 279–282

    Google Scholar 

  • Kade B, Dabbs ER, Wittmann-Liebold B (1980) Protein-chemical study on Escherichia coli mutants with altered ribosomal proteins S6 and S7. FEBS Lett 121: 313–316

    Google Scholar 

  • Kamp RM, Wittmann-Liebold B (1982) Primary structure of protein L9 from the Escherichia coli ribosome. FEBS Lett 149: 313–319

    Google Scholar 

  • Kitakawa M, Blumenthal L, Isono K (1980) Isolation and characterization of specialized transducing λ phages carrying ribosomal protein genes of Escherichia coli. Mol Gen Genet 180: 343–349

    Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during assembly of the head of bacteriophage T4. Nature 227: 680–682

    Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning — A laboratory manual. Cold Spring Harbor Laboratory, New York

    Google Scholar 

  • Meek DW, Hayward RS (1985) Nucleotide sequence of the rpoA-rplQ DNA of Escherichia coli: a second regulatory binding site for protein S4? Nucleic Acids Res 12: 5813–5820

    Google Scholar 

  • Messing J, Crea R, Seeburg P (1981) A system for shotgun DNA sequencing. Nucleic Acids Res 9: 309–321

    Google Scholar 

  • O'Farrell PH, Kutter E, Nakanishi M (1980) A restriction map of the bacteriophage T4 genome. Mol Gen Genet 179: 421–435

    Google Scholar 

  • Reeh S, Pedersen S (1979) Post-translational modification of Escherichia coli ribosomal protein S6. Mol Gen Genet 173: 183–187

    Google Scholar 

  • Sancar A, Hack AM, Rupp WD (1979) Simple method for identification of plasmid-coded proteins. J Bacteriol 137: 692–693

    Google Scholar 

  • Sanger F, Coulson AR, Barrell BG, Smith AJH, Roe BA (1980) Cloning in single-strand bacteriophage as an aid to rapid DNA sequencing. J Mol Biol 143: 161–178

    Google Scholar 

  • Takata R, Mukai T, Aoyagi M, Hori K (1984) Nucleotide sequence of the gene for Escherichia coli ribosomal protein S15 (rpsO). Mol Gen Genet 197: 225–229

    Google Scholar 

  • Yaguchi M (1975) Primary structure of protein S18 from the small Escherichia coli ribosomal subunit. FEBS Lett 59: 217–220

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by A. Böck

Rights and permissions

Reprints and permissions

About this article

Cite this article

Schnier, J., Kitakawa, M. & Isono, K. The nucleotide sequence of an Escherichia coli chromosomal region containing the genes for ribosomal proteins S6, S18, L9 and an open reading frame. Molec Gen Genet 204, 126–132 (1986). https://doi.org/10.1007/BF00330199

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00330199

Key words

Navigation