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Random sequence oligonucleotide primers detect polymorphic DNA products which segregate in inbred strains of mice

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Abstract

The random amplification of polymorphic DNA (RAPD) using primers of arbitrary nucleotide sequence has been extremely valuable in identifying heritable markers in a variety of systems. The present studies examined whether the RAPD technique can identify large numbers of polymorphisms that can be used to construct genetic maps in inbred strains of mice. By screening the inbred mouse strains C57BL/6J and DBA/2J with 481 random 10-mer oligonucleotide primers, we identified 95 polymorphisms and mapped 76 of these by use of the BXD series of recombinant inbred (RI) strains. The results clearly demonstrate that the RAPD technique allows for the identification of large numbers of DNA-based polymorphisms that distinguish these two inbred strains of mice,and that such markers can readily be used to construct molecular genetic linkage maps.

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References

  • Atchley, W.R. and Fitch, W.M.: Gene trees and the origins of inbred strains of mice. Science 254: 554–558, 1991.

    Google Scholar 

  • Avner, P., Amar, L., Dandolo, L., and Guénet, J.-l.: Genetic analysis of the mouse using interspecific crosses. Trends Genet 4: 18–23, 1988.

    Google Scholar 

  • Bell, B., Karam, J., and Rutter, W.: Polymorphic DNA region adjacent to the 5′ end of the human insulin gene. Proc Natl Acad Sci USA 78: 5759–5763, 1981.

    Google Scholar 

  • Botstein, D., White, R.L., Skolnick, M., and Davis, R.W.: Construction of a genetic linkage map in man using restriction product length polymorphisms. Am J Hum Genet 32: 314–331, 1980.

    Google Scholar 

  • Buchberg, A.M., Bedigian, H.G., Taylor, B.A., Brownell, E., Ehle, J.N., Nagata, S., Jenkins, N.A., and Copeland, N.G.: Localization of Evi-2 to Chromosome 11: Linkage to other proto-oncogene and growth factor loci using interspecific backcross mice. Oncogene Res 2: 149–165, 1988.

    Google Scholar 

  • Guénet, J.-L., Simon-Chazottes, D., and Avner, P.R.: The use of interspecific mouse crosses for gene localization: Present status and future perspectives. Curr Top Microbiol Immunol 137: 13–17, 1988.

    Google Scholar 

  • Jeffreys, A.J., Neumann, R., and Wilson, V.: Repeat unit sequence variation in minisatellites: A novel source of DNA polymorphism for studying variation and mutation by single molecule analysis. Cell 60: 473–485, 1990.

    Google Scholar 

  • Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., and Newburg, L.: MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174–181, 1987.

    Google Scholar 

  • Lathrop, G.M., Lalouel, J.M., Julier, C., and Ott, J.: Strategies for multi-locus linkage analysis in humans. Proc Natl Acad Sci USA 81: 3443–3446, 1984.

    Google Scholar 

  • Litt, M. and Luty, J.A.: Hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat in the cardiac muscle actin gene. Am J Hum Genet 44: 397–401, 1989.

    Google Scholar 

  • Martin, G.B., Williams, J.G.K., and Tanksley, S.D.: Rapid identification of markers linked to Pseudomonas resistance gene in tomato by using random primers and near-isogenic lines. Proc Natl Acad Sci USA 88: 2336–2340, 1991.

    Google Scholar 

  • Skolnick, M.H. and Wallace, R.B.: Simultaneous analysis of multiple polymorphic loci using amplified sequence polymorphism (ASPs). Genomics 2: 273–279, 1988.

    Google Scholar 

  • Warren, G.J. and Green, R.L.: Comparison of physical and genetic properties of palindromic DNA sequences. J Bacteriol 161: 1103–1111, 1985.

    Google Scholar 

  • Welsh, J. and McClelland, M.: Fingerprinting genomes using PCR with arbitrary primers. Nucl Acids Res 18: 7213–7218, 1990.

    Google Scholar 

  • Welsh, J., Petersen, C., and McClelland, M.: Polymorphisms generated by arbitrarily primed PCR in the mouse: Application to strain identification and genetic mapping. Nucl Acids Res 19: 303–306, 1991.

    Google Scholar 

  • Wicking, C. and Williamson, B.: From linked marker to gene. Trends Genet 7: 288–292, 1991.

    Google Scholar 

  • Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A., and Tingey, S.V.: DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl Acids Res 18: 6531–6535, 1990.

    Google Scholar 

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Woodward, S.R., Sudweeks, J. & Teuscher, C. Random sequence oligonucleotide primers detect polymorphic DNA products which segregate in inbred strains of mice. Mammalian Genome 3, 73–78 (1992). https://doi.org/10.1007/BF00431249

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  • DOI: https://doi.org/10.1007/BF00431249

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