Summary
By applying the Southern blot technique we compared the structural gene rpsA for ribosomal protein S1 and its preceding sequence from Escherichia coli with nine other bacterial species. We found high homology among the structural genes of E. coli and other gram-negative but not gram-positive bacteria. In contrast, the regulatory sequence preceding the structural gene was not highly conserved among the organisms studied.
Cloning and DNA sequence analysis of a 1.2 kb fragment coding for most of the structural gene for S1 from Providencia localized some strongly conserved parts of the DNA sequence, despite the fact that the codon usage showed considerable divergence from that of E. coli.
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References
Chow LT, Kahmann R, Kamp D (1977) Electron microscopic characterization of DNAs of non-defective deletion mutants of bacteriophage Mu. J Mol Biol 113:591–609
Csonka LN, Clark AJ (1979) Deletions generated by the transposon Tn10 in the srl recA region of the Escherichia coli K12 chromosome. Genetics 93:321–343
Draper DE, von Hippel PH (1978a) Nucleic acid binding properties of Escherichia coli ribosomal protein S1. II. Co-operativity and specificity of binding site II. J Mol Biol 122:339–359
Draper DE, von Hippel PH (1978b) Nucleic acid binding properties of Escherichia coli ribosomal protein S1. I. Structure and interaction of binding site I. J Mol Biol 122:321–338
Filer D, Furano AV (1980) Portions of the gene encoding elongation factor Tu are highly conserved in prokaryotes. J Biol Chem 255:728–734
Giorginis S, Subramanian AR (1980) The major ribosome binding site of Escherichia coli ribosomal protein S1 is located in its N-terminal segment. J Mol Biol 141:393–408
Higo K, Otaka E, Osawa S (1982) Purification and characterization of 30S ribosomal proteins from Bacillus subtilis: Correlation to Escherichia coli 30S proteins. Mol Gen Genet 185:239–244
Isono K (1984) A computer program package for storing and retrieving DNA/RNA and protein sequence data. Nucleic Acids Res 12:101–112
Isono K, Isono S (1976) Lack of ribosomal protein S1 in Bacillus stearothermophilus. Proc Natl Acad Sci USA 73:767–770
Keener SL, McNamee KP, McEntee K (1984) Cloning and characterization of recA genes from Proteus vulgaris Erwinia carotovora, Shigella flexneri, and Escherichia coli B/r. J Bacteriol 160:153–160
Kimura M, Foulaki K, Subramanian AR, Wittmann-Liebold B (1982) Primary structure of Escherichia coli ribosomal protein S1 and features of its functional domains. Eur J Biochem 123:37–53
Kitakawa M, Isono K (1982) An amber mutation in the gene rpsA for ribosomal protein S1 in Escherichia coli. Mol Gen Genet 185:445–447
Kitakawa M, Blumenthal L, Isono K (1980) Isolation and characterization of specialized transducing phages carrying ribosomal protein genes of Escherichia coli. Mol Gen Genet 180:343–349
Lother H, Lurz R, Orr E (1984) DNA binding and antigenic specifications of DNA gyrase. Nucleic Acids Res 12:901–914
McDonell MW, Simon MN, Studier FW (1977) Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels. J Mol Biol 110:119–146
Messing J, Crea R, Seeburg P (1981) A system for shotgun DNA sequencing. Nculeic Acids Res 9:309–321
Moseley SL, Falkow S (1980) Nucleotide sequence homology between the heat-labile enterotoxin gene of Escherichia coli and Vibrio cholerae deoxyribonucleic acid. J Bacteriol 144:444–446
Murray CL, Rabinowitz JC (1982) Nucleotide sequences of transcription and translation initiation regions in Bacillus phage phi 29 early genes. J Biol Chem 257:1053–1062
Ono M, Kuwano M, Mizushima S (1979) Genetic analysis of a mutation affecting ribosomal protein S1 in Escherichia coli. Mol Gen Genet 174:11–15
Pedersen S, Skouv J, Kajitani M, Ishihama A (1984) Transcriptional organisation of the rpsA operon of Escherichia coli. Mol Gen Genet 196:135–140
Penner JL (1984) Genus XII. Providencia. In: Krieg NR, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 1. Williams and Wilkins, Baltimore, USA, pp 494–496
Rigby PWJ, Dieckmann M, Rhodes C, Berg P (1977) Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol 113:237–251
Sanger F, Coulson AR, Barrell BG, Smith AJH, Roe BA (1980) Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing. J Mol Biol 143:161–178
Schnier J, Isono K (1982) The DNA sequence of the gene rpsA of Escherichia coli coding for ribosomal protein S1. Nucleic Acids Res 10:1857–1865
Schnier J, Kimura M, Foulaki K, Subramanian AR, Isono K, Wittmann-Liebold B (1982) Primary structure of Escherichia coli ribosomal protein S1 and of its gene rpsA. Proc Natl Acad Sci USA 79:1008–1011
Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503–517
Suryanarayana T, Subramanian AR (1979) Functional domains of Escherichia coli ribosomal protein S1. J Mol Biol 127:41–54
van Dieijen G, van Knippenberg PH, van Duin J (1976) The specific role of ribosomal protein S1 in the recognition of native phage RNA. Eur J Biochem 64:511–518
Weiss B, Jacquemin-Sablon A, Live TR, Fareed GC, Richardson CC (1968) Enzymatic breakage and joining of deoxyribonucleic acid. VI. Further purification and properties of polynucleotide ligase from Escherichia coli infected with bacteriophage T4. J Biol Chem 243:4543–4555
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Communicated by H. Saedler
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Schnier, J., Faist, G. Comparative studies on the structural gene for the ribosomal protein S1 in ten bacterial species. Molec. Gen. Genet. 200, 476–481 (1985). https://doi.org/10.1007/BF00425734
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DOI: https://doi.org/10.1007/BF00425734