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  • Articles: DFG German National Licenses  (2)
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  • 1
    ISSN: 1572-9729
    Keywords: community fingerprint ; polycyclic aromatic hydrocarbon ; 16S rRNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Microcosm experiments were conduced in which the surface of marine sediment was contaminated with naphthalene and subjected to either of three different bioremediation schemes, i.e., biostimulation (BS) by supplementing with slow-release nitrogen and phosphorus fertilizers, bioaugmentation (BA) by inoculating with Cycloclasticus sp. E2, an aromatics-degrading bacterium identified to play an important role for aromatic-hydrocarbon degradation in marine environments and combination (CB) of BS and BA. These three schemes were found to be similarly effective for removing naphthalene, while naphthalene disappearance in sediment without any treatment (WT) was slower than those in the treated sediments. Shifts in bacterial populations during and after bioremediation were analyzed by denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA gene fragments. It was found that the Cycloclasticus rRNA type occurred as the strongest bands in the course of naphthalene degradation. Clustering analysis of DGGE profiles showed that bacterial populations in the WT, BS and CB sediments differed consistently from those in the uncontaminated control, while the profile for the BA sediment was finally included in the cluster for uncontaminated control sediments after a 150-day treatment. The results suggest that bioaugmentation with ecologically competent pollutant-degrading bacteria is an ecologically promising bioremediation scheme.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Hydrobiologia 401 (1999), S. 199-206 
    ISSN: 1573-5117
    Keywords: hypersaline ; microbial mat ; cyanobacteria ; diatom ; microbial richness ; biodiversity ; 16S rRNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We characterized the richness of benthic cyanobacteria and diatoms in a salina system using traditional and molecular biological methods. After determining the different morphotypes and 16S rRNA genes present in various localities within this hypersaline system, an analysis of the increase of organismal richness as a function of numbers of samples considered was carried out. We found that the spatial scales of sampling yielding significant increases in cumulative richness were those at which significant variations in environmental parameters (salinity, vertical microgradients) are known to exist, indicating that the presence of environmental gradients contributes to increased biodiversity. Additionally, we could use this type of cumulative analysis for the estimation, through asymptotic extrapolation, of the total richness of oxygenic phototrophs present in the entire salina system, and for the estimation of the average degree of dissemination of community members within the system. We found interesting differences between analyses based on morphotypes or 16S rRNA genes. The cumulative number of rRNA gene sequences exceeded that of morphotypes by more than two-fold. This indicates that many organisms possessing distinct 16S rRNA gene sequences could not be distinguished on the basis of morphology. Thus, some of the apparently widely distributed morphotypes may in fact conceal several ecologically independent genotypes.
    Type of Medium: Electronic Resource
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