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  • Electronic Resource  (33)
  • 2005-2009  (2)
  • 2000-2004  (31)
  • 1920-1924
  • biodegradation
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  • Electronic Resource  (33)
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  • 1
    ISSN: 1572-9729
    Keywords: biodegradation ; Burkholderia ; fenitrothion ; mpd gene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A short rod shaped, gram-negative bacterium strain Burkholderia sp. FDS-1 was isolated from the sludge of the wastewater treating system of an organophosphorus pesticides manufacturer. The isolate was capable of using fenitrothion as the sole carbon source for its growth. FDS-1 first hydrolyzed fenitrothion to 3-methyl-4-nitrophenol, which was further metabolized to nitrite and methylhydroquinone. The addition of other carbon source and omitting phosphorus source had little effect on the hydrolysis of fenitrothion. The gene encoding the organophosphorus hydrolytic enzyme was cloned and sequenced. The sequence was similar to mpd, a gene previously shown to encode a parathion-methyl-hydrolyzing enzyme in Plesiomonas sp. M6. The inoculation of strain FDS-1 (106 cells g−1) to soil treated with 100 mg fenitrothion emulsion kg−1 resulted in a higher degradation rate than in noninoculated soils regardless of the soil sterilized or nonsterilized. These results highlight the potential of this bacterium to be used in the cleanup of contaminated pesticide waste in the environment.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 17 (2006), S. 207-217 
    ISSN: 1572-9729
    Keywords: biodegradation ; DGGE ; K2Ni(CN)4 soil bacterial populations
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Metal cyanides are significant contaminants of many soils found at the site of former industrial activity. In this study we isolated bacteria capable of degrading ferric ferrocyanide and K2Ni(CN)4. One of these bacteria a Rhodococcus spp. was subsequently used to bioaugment a minimal medium broth, spiked with K2Ni(CN)4, containing 1 g of either an uncontaminated topsoil or a former coke works site soil. Degradation of the K2Ni(CN)4 was observed in both soils, however, bioaugmentation did not significantly impact the rate or degree of K2Ni(CN)4 removal. Statistical analysis of denaturing gradient gel electrophoresis profiles showed that the topsoil bacterial community had a higher biodiversity, and its structure was not significantly affected by either K2Ni(CN)4 or bioaugmentation. In contrast, profiles from the coke works site indicated significant changes in the bacterial community in response to these additions. Moreover, in both soils although bioaugmentation did not affect rates of biodegradation the Rhodococcus spp. did become established in the communities in broths containing both top and coke works soil. We conclude that bacterial communities from contaminated soils with low biodiversity are much more readily perturbed through interventions such as contamination events or bioaugmentation treatments and discuss the implications of these findings for bioremediation studies.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1572-9729
    Keywords: 16S rDNA ; biodegradation ; Biolog ; Klebsiella ; thiocyanate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A mixed bacterial culture capable of growing in potassium-thiocyanatecontaining medium (200 mg KSCN) has been isolated from bacterial suspensions of soilsamples collected near gold mines in Kumjung (Korea). The isolates were initially characterized by metabolic profile analysis and were identified as Bacillus thermoglucosidasius,Bacillus cereus, Bacillus licheniformis, Bacillus mycoides, Brevibacteriumepidermidis, Brevibacterium otitidis, and Corynebacterium nitrilophilus.One of the seven isolates was initially characterized as Brevibacterium epidermidis,which is not known to degrade thiocyanate. However, using 16S rDNA sequencing, thisstrain was identified as a member of Klebsiella. The strain shows high similarityvalues (95.8 to 96.4%) with Klebsiella species, and the closest known relative was foundto be K. ornithinolytica ATCC 31898. The result indicates that species of the genusKlebsiella were the closest phylogenetic relatives of the investigated strain. This isthe first known report of a member of Klebsiella that is capable of utilizing thiocyanate assole source of carbon and nitrogen.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Journal of polymers and the environment 8 (2000), S. 67-79 
    ISSN: 1572-8900
    Keywords: Polyvinyl alcohol ; biodegradation ; soil, clay ; adsorption
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract The rates and extents of absorption and desorption of polyvinyl alcohol (PVA) samples on different solid substrates comprising montmorillonite, quartz sand, and farm soil, as well as humic acid mixture are reported. The uptake of PVA by the substrates was analyzed as a function of PVA hydrolysis (72–98%), molecular weight, and molecular weight distribution. Higher adsorption was detected on montmorillonite followed by farm soil, whereas the quartz sand did not display any specific adsorption affinity for the PVA. An increase in the hydrolysis degree of PVA increased the adsorption rate and extent whereas this feature was reversed by an increase in PVA molecular weight. The desorption of PVA samples from the different substrates was performed both under various pH conditions and in the presence of concentrated HF that was used to dissolve the silicon derivatives present in the substrates. Biodegradation experiments carried out in liquid cultures of PVA adsorbed on montmorillonite showed that the mineralization of the adsorbed PVA was much lower than that detected for the nonadsorbed PVA. This investigation suggests that irreversible adsorption of PVA on the clay component occurs in soil, thus substantially inhibiting PVA biodegradation.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Journal of polymers and the environment 8 (2000), S. 91-96 
    ISSN: 1572-8900
    Keywords: Polyester amide ; hemp fiber ; composite ; biodegradation ; carbon balance
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract In a composite, fast degradable fibers determine the degradation of the slowly degradable matrix. Such biodegradable composites consisting of degummed hemp fibers and a polyester amide matrix were produced with fiber mass fractions between 0 and 0.48. The hot-pressed plates, 1-mm thick, were incubated in a standard soil. The degradation kinetics was quantified by the measurement of CO2 production. Furthermore, after termination of experiment, the carbon balance was uncovered. The results were fitted to an exponential law taking into account the degradation of fibers. The increased amount of pores realized by high fiber contents induces pronounced degradation. The degradation is fully characterized by the time constant τ, which is correlated to the fiber mass fraction. The model allows to predict the degradation kinetics of composites with a few well-defined experiments.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Journal of polymers and the environment 8 (2000), S. 167-174 
    ISSN: 1572-8900
    Keywords: Polyimides ; electronic insulation ; biodegradation ; biodeterioration ; fungi ; electrochemical impedance spectroscopy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract An electrochemical impedance spectroscopy (EIS) technique was evaluated for monitoring microbial degradation of electronic packaging polyimides. The microbial inoculum was a mixed culture of fungi isolated previously from deteriorated polyimides. The active fungal consortium comprised Aspergillus versicolor, Cladosporium cladosporioides, and a Chaetomium species. After inoculation, fungal growth on the polyimides resulted in distinctive EIS spectra indicative of polymer insulation failure, which directly related to polymer integrity. Degradation appeared to occur in a number of steps and two distinctive stages in the decline of film resistance were observed in the inoculated EIS cells within the 2 and 10 weeks after inoculation. The early stage of resistance decrease may be related to the ingress of water molecules and ionic species into the polymeric materials, whereas the second stage probably resulted from partial degradation of the polymers by fungal growth on the polymer film. The relationship between changes of impedance spectra and microbial degradation of the polymer was further supported by scanning electron microscopy (SEM) observations of fungi growing on the surface of the inoculated polyimides. Our data indicate that the EIS can be used in detection of early degradation of resistant polymers and polyimides that are susceptible to biodeterioration.
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1572-8900
    Keywords: Extruded ; polyvinyl alcohol ; starch ; glycerol ; biodegradation ; films
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract Elongation properties of extruded cornstarch were improved by blending with glycerol. Further blending of starch-glycerol with polyvinyl alcohol (PVOH) resulted in significant improvements in both tensile strength (TS) and elongation at break. Samples of starch-glycerol without PVOH equilibrated at 50% relative humidity had a TS of 1.8 MPa and elongation of 113%, whereas those containing PVOH had a TS and elongation of 4 MPa and 150%, respectively. Dynamic mechanical analysis (DMA) of starch-glycerol-PVOH blends showed that decreases in glass transition temperatures (T g values) were proportional to glycerol content. Scanning electron microscopy (SEM) of fractured surfaces revealed numerous cracks in starch-glycerol (80:20) samples. Cracks were absent in starch-glycerol (70:30) samples. In both blends, many starch granules were exposed at the surface. No exposed starch granules were visible in blends with added PVOH. Starch-glycerol samples incubated in compost lost up to 70% of their dry weight within 22 days. Addition of PVOH lowered both the rate and extent of biodegradation.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1572-8900
    Keywords: Polyion complex fibers ; biodegradation ; soil filamentous fungi, chitosan ; poly(L-lysine) ; gellan
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract The degradation of two kinds of polyion complex (PIC) fibers, chitosan-gellan (CGF), and poly(L-lysine)-gellan (LGF) fibers, by seven species of soil filamentous fungi has been investigated. All of the pure-line soil filamentous fungi, Aspergillus oryzae, Penicillium caseicolum, P. citrinum, Mucor sp., Rhizopus sp., Curvularia sp., and Cladosporium sp. grew on the two fiber materials. Microscopic observation of the biodegradation processes revealed that P. caseicolum on the CGF and LGF grew, along with the accompanying collapse of the fiber matrices. In the biochemical oxygen-demand (BOD) test, the biodegradation of the LGF by P. caseicolum and Curvularia sp. exceeded 97% carbon dioxide generation and the biodegradation of the CGF by A. oryzae was 59%. These results might offer some clues to the applications of the PIC fibers as environmentally biodegradable materials.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 11 (2000), S. 289-294 
    ISSN: 1572-9729
    Keywords: biodegradation ; cellular fatty acids ; crude oil ; end products ; hydrocarbons ; rhodococcus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A hydrocarbon degrader isolated from a chronically oil-polluted marine site was identified as Rhodococcus sp. on the basis of morphology, fatty acid methyl ester pattern, cell wall analysis, biochemical tests and G + C content of DNA. It degraded upto 50% of the aliphatic fraction of Assam crude oil, in seawater supplemented with 35 mM nitrogen as urea and 0.1 mM phosphorus as dipotassium hydrogen orthophosphate, after 72 h at 30 ° and 150 revolutions per minute. The relative percentage of intracellular fatty acid was higher in hydrocarbon-grown cells compared to fructose-grown cells. The fatty acids C16 , C1616 :1 C18 and C18 : 1 were constitutively present regardless of the growth substrate. In addition to these constitutive acids, other intracellular fatty acids varied in correlation to the hydrocarbon chain length supplied as a substrate. When grown on odd carbon number alkanes, the isolate released only monocarboxylic acids into the growth medium. On even carbon number alkanes only dicarboxylic acids were produced.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 11 (2000), S. 323-329 
    ISSN: 1572-9729
    Keywords: biodegradation ; microbial polyester ; poly(3-hydroxybutyrate) ; poly(3-hydroxybutyrate-co-3-hydroxyvalerate)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Poly(3-hydroxybutyrate) [P(3HB)] test-pieces prepared from the polymer produced by Azotobacter chroococcum were degraded in natural environments like soil, water, compost and sewage sludge incubated under laboratory conditions. Degradation in terms of % weight loss of the polymer was maximum (45%) in sewage sludge after 200 days of incubation at 30°C. The P(3HB)-degrading bacterial cultures (36) isolated from degraded test-pieces showed different degrees of degradation in polymer overlayer method. The extent of P(3HB) degradation increases up to 12 days of incubation and was maximum at 30°C for majority of the cultures. For most efficient cultures the optimum concentration of P(3HB) for degradation was 0.3% (w/v). Supplementation of soluble carbon sources like glucose, fructose and arabinose reduced the degradation while it was almost unaffected with lactose. Though the cultures degraded P(3HB) significantly, they were comparatively less efficient in utilizing copolymer of 3-hydroxybutyrate and 3-hydroxyvalerate [P(3HB-co-3HV)].
    Type of Medium: Electronic Resource
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  • 11
    ISSN: 1572-9729
    Keywords: biodegradation ; biofiltration ; hydrogen sulfide ; malodorous compounds
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A laboratory scale bioreactor has been designed and set up in order to degrade hydrogen sulfide from an air stream. The reactor is a vertical column of 7 litre capacity and 1 meter in height. It is divided into three modules and each module is filled with pellets of agricultural residues as packing bed material. The gas stream fed into the reactor through the upper inlet consists of a mixture of hydrogen sulfide and humidified air. The hydrogen sulfide content in the inlet gas stream was increased in stages until the degradation efficiency was below 90%. The parameters to be controlled in order to reach continuous and stable operation were temperature, moisture content and the percentage of the compound to be degraded at the inlet and outlet gas streams (removal or elimination efficiency). When the H2S mass loading rate was between 10 and 40 g m-3h-1, the removal efficiency was greater than 90%. The support material had a good physical performance throughout operation time, which is evidence that this material is suitable for biofiltration purposes.
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  • 12
    ISSN: 1573-4846
    Keywords: porous bioactive material ; bone substitute ; biodegradation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract A novel porous material produced via sol gel process is disclosed which is osteoinductive and biodegradable. Due to the fact that high temperatures are avoided during the production process, the degree of crystallinity is very low and the packing of the crystallites is relatively loose. These are important parameters for the biodegradation properties. Nanoporous silica gel is contained to the support of strength. The low degree of crystallinity and the high degree of porosity (50–70%, pores in the range of few microns) make the material resorbable. A second type of pores designed in the range of few millimetres supports the bone ingrowth. An in vitro formation of bone tissue is shown when the material is exposed to tissue culture medium and inoculated with human osteoblastic cells. Animal tests show the formation of new bone tissue and first steps of biodegradation.
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  • 13
    ISSN: 1608-3237
    Keywords: phenanthrene ; naphthalene ; biodegradation ; Pseudomonas putida ; naphthalene dioxygenase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Five naphthalene- and salicylate-utilizing Pseudomonas putida strains cultivated for a long time on phenanthrene produced mutants capable of growing on this substrate and 1-hydroxy-2-naphthoate as the sole sources of carbon and energy. The mutants catabolize phenanthrene with the formation of 1-hydroxy-2-naphthoate, 2-hydroxy-1-naphthoate, salicylate, and catechol. The latter products are further metabolized by the meta- and ortho-cleavage pathways. In all five mutants, naphthalene and phenanthrene are utilized with the involvement of plasmid-born genes. The acquired ability of naphthalene-degrading strains to grow on phenanthrene is explained by the fact that the inducible character of the synthesis of naphthalene dioxygenase, the key enzyme of naphthalene and phenanthrene degradation, becomes constitutive.
    Type of Medium: Electronic Resource
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  • 14
    Electronic Resource
    Electronic Resource
    Springer
    Veterinary research communications 24 (2000), S. 379-387 
    ISSN: 1573-7446
    Keywords: biodegradation ; fumonisin B1 ; metabolites ; microflora ; mycotoxin ; rumen ; short-chain fatty acid
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Fumonisin B1 (FB1) is a mycotoxin produced by Fusarium moniliforme and F. proliferatum. Little is known of its metabolic fate after oral ingestion in ruminants, but these animals are reported to be tolerant towards FB1. The metabolism of this mycotoxin was evaluated following incubation (1 μg/ml) in ruminal fluid for up to 72 h, in the presence or absence of alfalfa as a substrate for microbial growth, using a model rumen (sealed flask, anaerobic conditions, exclusion of light, gentle agitation, 39°C). The decrease in FB1 concentration and the production of short-chain fatty acids were determined. FB1 had no effect on SCFA production. After 72 h incubation, FB1 depletion was 12% and 18% in samples with and without alfalfa, respectively. No hydrolysed metabolites (aminopolyols or aminopentol) were detected. These results indicate that FB1 is poorly metabolized in the rumen and suggest that such metabolism is not the cause of the tolerance to this toxin displayed by ruminants.
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  • 15
    ISSN: 1436-2023
    Keywords: Key words: biomaterial ; biodegradation ; tendon repair
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract: This study investigated whether three biodegradable materials, poly–N–acetyl–D–glucosamine (chitin), poly-ε-caprolactone (p-CL), polylactic acid (PLA), and chitin/p-CL composite could be used as scaffold implants in the reconstruction of extra-articular ligaments or tendons. Braided artificial tendons made from these materials were soaked in phosphate-buffered saline or implanted in the subcutaneous tissue of 31 Japanese white rabbits and then subjected to load at failure testing. There was no significant loss of load at failure when chitin tendons were soaked in saline for 26 weeks, but a rapid decrease occurred in vivo. The other two types of tendons showed significant loss of strength after 26 weeks both in vitro and in vivo. Another 111 rabbits were used to assess Achilles tendon reconstruction with the braided tendon implants. The tendon regeneration process was assessed macroscopically, histologically, immunohistochemically, and mechanically (maximum load at failure). Chitin showed more rapid degradation than the other materials on histological examination. There was good formation of fibrous tissue composed of type I and type III collagen around the chitin, PLA, and chitin/p-CL fibers in comparison with p-CL fibers, but chitin tendons showed more rapid loss of strength after implantation. Both PLA and the chitin/p-CL composite tendons had good initial strength and showed increased ingrowth of fibrous tissue, suggesting that these materials are promising as artificial tendons.
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  • 16
    Electronic Resource
    Electronic Resource
    Springer
    Plant and soil 227 (2000), S. 207-213 
    ISSN: 1573-5036
    Keywords: adsorption ; arbuscular mycorrhizal fungi ; biodegradation ; polycyclic aromatic hydrocarbons ; rhizosphere ; soil
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Polycyclic aromatic hydrocarbons (PAH) can be degraded in the rhizosphere but may also interact with vegetation by accumulation in plant tissues or adsorption on root surface. Previous studies have shown that arbuscular mycorrhizal (AM) fungi contribute to the establishment and maintenance of plants in a PAH contaminated soil. We investigated the fate of PAH in the rhizosphere and mycorrhizosphere including biodegradation, uptake and adsorption. Experiments were conducted with ryegrass inoculated or not with Glomus mosseae P2 (BEG 69) and cultivated in pots filled with soil spiked with 5 g kg−1 of anthracene or with 1 g kg−1 of a mixture of 8 PAH in a growth chamber. PAH were extracted from root surfaces, root and shoot tissue and rhizosphere soil and were analysed by GC-MS. In both experiments, 0.006 – 0.11‰ of the initial extractable PAH concentration were adsorbed to roots, 0.003 – 0.16‰ were found in root tissue, 0.001‰ in shoot tissue and 36 – 66% were dissipated, suggesting that the major part of PAH dissipation in rhizosphere soil was due to biodegradation or biotransformation. With mycorrhizal plants, anthracene and PAH were less adsorbed to roots and shoot tissue concentrations were lower than with non mycorrhizal plants, which could contribute to explain the beneficial effect of AM fungi on plant survival in PAH contaminated soils.
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  • 17
    Electronic Resource
    Electronic Resource
    Springer
    Hydrogeology journal 8 (2000), S. 112-125 
    ISSN: 1435-0157
    Keywords: nucleic-acid procedures ; microbiology ; biodegradation ; microbial ecology ; microbial processes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences
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  • 18
    Electronic Resource
    Electronic Resource
    Springer
    Hydrogeology journal 8 (2000), S. 47-62 
    ISSN: 1435-0157
    Keywords: microbial processes ; USA ; scale effects ; hydrochemistry ; biodegradation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences
    Description / Table of Contents: Dans l'aquifère libre pollué du fluvio-glaciaire près de Bemidji (Minnesota, États-Unis), la chimie des carbonates est influencée d'abord à l'échelle macroscopique. Sous des conditions oxiques, la respiration d'hétérotrophes indigènes aérobies produit du dioxyde de carbone en excès, qui provoque la dissolution de la calcite et de la dolomite. Les micro-organismes aérobies ne colonisent pas la surface de la dolomite et sont peu présentes sur la calcite. Dans les eaux souterraines anoxiques, la croissance de la calcite forme sur la calcite non colonisée des plans de clivages, probablement dus à la consommation d'acidité par des bactéries simulant la réduction du fer. Comme la concentration d'oxygène moléculaire augmente en aval de la pollution pétrolière, les organismes aérobies dominent à nouveau et les hydrocarbures résiduels et le fer ferreux sont oxydés, ce qui provoque la dissolution des minéraux carbonatés et la précipitation du fer à l'échelle macroscopique. Les feldspaths au contraire sont altérés uniquement à l'échelle microscopique à proximité des micro-organismes fixés, principalement dans la partie anoxique du panache. Les organismes indigènes colonisent de préférence les feldspaths qui contiennent des traces de phosphore sous forme d'inclusions d'apatite, apparemment à cause de la faible concentration en P des eaux souterraines. Ces feldspaths s'altèrent rapidement, tandis que les feldspaths voisins sans traces de P ne sont ni colonisés, ni altérés. La dissolution des feldspaths s'accompagne de la précipitation de minéraux secondaires, quelquefois sur la paroi cellulaire elle-même de ces bactéries. Ces observations suggèrent un système de faible lien biogéochimique dans lequel les processus microbiens contrôlent la diagenèse minérale à plusieurs échelles d’interaction, de même que la minéralogie et la chimie minérale influencent l’écologie microbienne. Seule l’interaction à l’échelle macroscopique est cependant observable par les méthodes géochimiques classiques; l’obtention d’informations sur les interactions à l’échelle microscopique exige des analyses microscopiques des micro-organismes sur les surfaces des minéraux et des réactions diagénétiques localement intenses qui en résultent.
    Abstract: El acuífero libre, de origen glacio-fluvial, y localizado cerca de Bemidji, Minnesota, EEUU, es un ejemplo de acuífero contaminado donde la química del carbono está influida principalmente por procesos macroescalares. En condiciones óxicas, la respiración de los organismos aerobios heterótrofos produce un exceso de CO2 que da lugar a la disolución de calcita y dolomita. Los microorganismos anaerobios no aparecen en las dolomitas y apenas en las calcitas. En las aguas subterráneas anóxicas se forman recrecimientos de calcita en zonas de fracturación preferente no colonizadas previamente. Estos recrecimientos posiblemente se deban al consumo de la acidez por bacterias ferro-reductoras. Como la concentración de oxígeno crece hacia aguas abajo del penacho de petróleo, los microorganismos aerobios vuelven a dominar, oxidando los hidrocarburos residuales y el Fe(II), produciendo disolución de carbonatos y precipitación de hierro. Por el contrario, los feldespatos se meteorizan sólo al nivel de microescala, principalmente en la región anóxica del penacho. Los organismos colonizan y meteorizan de modo preferente aquellos feldespatos en los que aparecen trazas de fósforo en forma de inclusiones de apatita, aparentemente como consecuencia de las bajas concentraciones de fósforo en las aguas subterráneas. Los feldespatos sin fósforo no son colonizados ni meteorizados. La disolución de los feldespatos está acompañada por la precipitación de minerales secundarios, algunas veces en la propia pared celular de la bacteria. En resumen existe un sistema biogeoquímico estrechamente ligado, donde los procesos microbianos controlan la diagénesis mineral a diversas escalas, y donde la mineralogía y la geoquímica influencian la ecología microbiana. Sin embargo, sólo las interacciones macroescalares son observables con métodos estándar, mientras que las microescalares requieren el uso de microscopio para examinar la presencia de microorganismos en las superficies y las reacciones diagenéticas.
    Notes: macroscale processes that perturb general groundwater chemistry and therefore mineral–water equilibria; and microscale interactions, where attached organisms locally perturb mineral–water equilibria, potentially releasing limiting trace nutrients from the dissolving mineral. In the contaminated unconfined glacio-fluvial aquifer near Bemidji, Minnesota, USA, carbonate chemistry is influenced primarily at the macroscale. Under oxic conditions, respiration by native aerobic heterotrophs produces excess carbon dioxide that promotes calcite and dolomite dissolution. Aerobic microorganisms do not colonize dolomite surfaces and few occur on calcite. Within the anoxic groundwater, calcite overgrowths form on uncolonized calcite cleavage surfaces, possibly due to the consumption of acidity by dissimilatory iron-reducing bacteria. As molecular oxygen concentration increases downgradient of the oil pool, aerobes again dominate and residual hydrocarbons and ferrous iron are oxidized, resulting in macroscale carbonate-mineral dissolution and iron precipitation. Feldspars, in contrast, weather exclusively at the microscale near attached microorganisms, principally in the anoxic region of the plume. Native organisms preferentially colonize feldspars that contain trace phosphorus as apatite inclusions, apparently as a consequence of the low P concentration in the groundwater. These feldspars weather rapidly, whereas nearby feldspars without trace P are uncolonized and unweathered. Feldspar dissolution is accompanied by the precipitation of secondary minerals, sometimes on the bacterial cell wall itself. These observations suggest a tightly linked biogeochemical system whereby microbial processes control mineral diagenesis at many scales of interaction, and the mineralogy and mineral chemistry influence microbial ecology. Only the macroscale interaction, however, is easily observable by standard geochemical methods, and documentation of the microscale interactions requires microscopic examination of microorganisms on mineral surfaces and the locally intense diagenetic reactions that result.
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  • 19
    ISSN: 1572-9729
    Keywords: aromatic hydrocarbons ; biodegradation ; CEC L-33-A-93 test ; lubricants ; mineral base oils ; viscosity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The primary biodegradability of two types of paraffinic base oils (solvent and catalytically dewaxed oils) and their blends was evaluated using the CEC L-33-A-93 test. The biodegradability values varied between 10% and 75%. Base oil mixtures displayed varying contents in aromatic and polar compounds and a wide range of kinematic viscosity (KV) values, from roughly 10 to 600 cSt (at 40°C), while their viscosity indices were almost constant (90-100). The biodegradability of oils was closely related to their content in polycyclic aromatic hydrocarbons and was also decreasing with kinematic viscosity. For the two types of base oils, a linear relationship could be set between the biodegradation percentages and the logarithms of KV values. These results show that, beside overall chemical features such as the contents in aromatic compounds, KV may be a prominent parameter for assessing the primary biodegradability of mineral base oils.
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  • 20
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    Biodegradation 11 (2000), S. 239-246 
    ISSN: 1572-9729
    Keywords: 1,4-Dioxane ; biodegradation ; cometabolism ; ethers ; tetrahydrofuran
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A mixed culture with the ability to aerobically biodegrade 1,4-dioxane in the presence of tetrahydrofuran (THF) was enriched from a 1,4-dioxane contaminated aquifer. This consortium contained 3–4 morphologically different types of colonies and was grown in mineral salts media. Biodegradation of 1,4- dioxane began when THF concentrations in batch experiments became relatively low. No biodegradation of 1,4-dioxane was observed in the absence of THF and the measured cell yield was similar during degradation of 1,4-dioxane with THF or with THF alone. However, when the consortium was grown in the presence of 14C-1,4-dioxane plus THF, 2.1% of the radiolabeled 1,4-dioxane was present in the particulate fraction. The majority of the 14C (78.1%) was recovered as 14CO2, while 5.8% remained in the liquid fraction. This activity is interesting since the non-growth substrate is mineralized, yet only minimally assimilated into biomass. Using THF as the growth substrate, 1,3-dioxane, methyl t-butyl ether, ethyl t-butyl ether and t-amyl methyl ether.
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  • 21
    ISSN: 1572-9729
    Keywords: biodegradation ; gasoline ; hydrocarbon ; intrinsic capacities ; natural attenuation ; soil pollution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A methodology allowing the detailed assessment ofthe capacities of microflorae to degrade gasoline inaerobic conditions has been developed. It consisted inthe determination of the degradation of a gasolinemodel mixture in liquid cultures in optimalconditions. The gasoline model mixture contained 23representative hydrocarbons of gasoline (GM23). Thekinetics and extent of biodegradation were evaluatedby continuous overall monitoring of CO2production and final chromatographic analysis (usuallyafter about 30 days) of the consumption of eachhydrocarbon. The methodology was used with soil andwater samples from polluted and non polluted sites.The experimentation aimed at assessing thedistribution of the degradative capacities in theenvironment and the prospects for natural attenuationof gasoline. Nine microflorae were tested. The intrinsicbiodegradability (existence of mechanisms ofbiodegradation) appeared total for GM23 as shown bythe results obtained with several microflorae. Thedegradative capacities of microflorae from nonpolluted samples were high (total degradation rates atleast 85%). Incomplete degradation was observedessentially for trimethylalkanes(2,2,4-trimethylpentane and 2,3,4-trimethylpentane)and for cyclohexane. In several cases, samples frompolluted sites exhibited more extensive degradativecapacities, with total degradation of all hydrocarbonsbeing observed for three out of the six samples.
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  • 22
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    Biodegradation 11 (2000), S. 55-63 
    ISSN: 1572-9729
    Keywords: Alcaligenes defragrans ; biodegradation ; essential oil ; monoterpenes ; nitrate reduction ; plant ; volatile organic compounds
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plant volatile organic compounds are a major carbonsource in nature. We studied the degradability ofthese substances by anaerobic microorganisms inenrichment cultures with representative essential oilsas organic substrates and nitrate as electronacceptor. Lemon and pine needle oil supportedmicrobial growth in the presence of pure oil, whereasparsley seed, camphor, sage, fennel, and mint oilsupported growth only when the essential oils weredissolved in an overlying phase of2,2,4,4,6,8,8-heptamethylnonane. Thyme oil did notsupport denitrification. Analyses of the microbiallydegraded oils revealed the disappearance ofmonoterpenes, of several monoterpenoids, and ofmethoxy-propenyl-benzenes, including apiole andmyristicin. Most-probable-number determinations fordenitrifying communities in sewage sludge and forestsoil yielded 106 to 107monoterpene-utilizing cells ml-1, representing0.7 to 100% of the total cultivablenitrate-reducing microorganisms. The utilization ofessential oils together with the common occurrence ofthis metabolic trait are indications for anenvironmentally important, but currently unexploredanaerobic turnover of plant volatile organic compoundsin soil.
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  • 23
    ISSN: 1572-9729
    Keywords: Availability ; Bacillus ; biodegradation ; biosurfactant ; hydrocarbon ; surfactin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A non-sterile biosurfactant preparation (surfactin)was obtained from a 24-h culture of Bacillussubtilis O9 grown on sucrose and used to study itseffect on the biodegradation of hydrocarbon wastes byan indigenous microbial community at theErlenmeyer-flask scale. Crude biosurfactant was addedto the cultures to obtain concentrations above andbelow the critical micelle concentration (CMC). Lowerconcentration affected neither biodegradation normicrobial growth. Higher concentration gave highercell concentrations. Biodegradation of aliphatichydrocarbons increased from 20.9 to 35.5% and in thecase of aromatic hydrocarbons from nil to 41%,compared to the culture without biosurfactant. Theenhancement effect of biosurfactant addition was morenoticeable in the case of long chain alkanes. Pristaneand phytane isoprenoids were degraded to the sameextent as n-C17 and n-C18 alkanes and, consequently,no decrease in the ratios n-C17/pri and n-C18/phy wasobserved. Rapid production of surfactin crudepreparation could make it practical for bioremediationof ship bilge wastes.
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  • 24
    ISSN: 1572-9729
    Keywords: anaerobic ; biodegradation ; BTEX ; fuel ; hydrocarbons ; Seal Beach
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Enhanced anaerobic biodegradation of groundwater contaminated by fuel hydrocarbons has been evaluated at a field experiment conducted at the Naval Weapons Station, Seal Beach, California. This experiment included the establishment of three different remediation zones in situ: one zone was augmented with sulfate, one was augmented with sulfate and nitrate, and the third was unaugmented. This enables a comparison of hydrocarbon biodegradation under sulfate-reducing, sequential denitrifying/sulfate-reducing, and methanogenic conditions, respectively. In general, the results from the field experiment are: (1) Certain fuel hydrocarbons were removed preferentially over others, but the order of preference is dependent upon the geochemical conditions; and (2) In the zones that were augmented with sulfate and/or nitrate, the added electron acceptors were consumed quickly, indicating that enhancement via electron acceptor injection accelerates the biodegradation process. More specifically, in the sulfate-reducing zone, sulfate was utilized with an apparent first-order rate coefficient of approximately 0.1 day-1. In the combined denitrifying/sulfate-reducing zone, nitrate was utilized preferentially over sulfate, with an apparent first-order rate coefficient of 0.1–0.6 day-1. However, the data suggest that slow sulfate utilization does occur in the presence of nitrate, i.e., the two processes are not strictly sequential. With regard to the aromatic BTEX hydrocarbons, toluene was preferentially removed under intrinsic conditions; biodegradation of benzene was slow if it occurred at all; augmentation with sulfate preferentially stimulated biodegradation of o-xylene; and ethylbenzene appeared recalcitrant under sulfate-reducing conditions but readily degradable under denitrifying conditions.
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  • 25
    ISSN: 1572-9729
    Keywords: aerobic ; bioremediation ; biodegradation ; gasoline ; MTBE ; TBA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract With the current practice of amending gasoline with up to 15% by volume MTBE, the contamination of groundwater by MTBE has become widespread. As a result, the bioremediation of MTBE-impacted aquifers has become an active area of research. A review of the current literature on the aerobic biodegradation of MTBE reveals that a number of cultures from diverse environments can either partially degrade or completely mineralize MTBE. MTBE is either utilized as a sole carbon and energy source or is degraded cometabolically by cultures grown on alkanes. Reported degradation rates range from 0.3 to 50 mg MTBE/g cells/h while growth rates (0.01–0.05 g MTBE/g cells/d) and cellular yields (0.1–0.2 g cells/g MTBE) are generally low. Studies on the mechanisms of MTBE degradation indicate that a monooxygenase enzyme cleaves the ether bond yielding tert-butyl alcohol (TBA) and formaldehyde as the dominant detectable intermediates. TBA is further degraded to 2-methyl-2-hydroxy-1-propanol, 2-hydroxyisobutyric acid, 2-propanol, acetone, hydroxyacteone and eventually, carbon dioxide. The majority of these intermediates are also common to mammalian MTBE metabolism. Laboratory studies on the degradation of MTBE in the presence of gasoline aromatics reveal that while degradation rates of other gasoline components are generally not inhibited by MTBE, MTBE degradation could be inhibited in the presence of more easily biodegradable compounds. Controlled field studies are clearly needed to elucidate MTBE degradation potential in co-contaminant plumes. Based on the reviewed studies, it is likely that a bioremediation strategy involving direct metabolism, cometabolism, bioaugmentation, or some combination thereof, could be applied as a feasible and cost-effective treatment method for MTBE contamination.
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  • 26
    ISSN: 1573-6776
    Keywords: biodegradation ; biosurfactant ; heavy metal ; hydrocarbon ; Rhodococcus sp.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract The production of biosurfactants was evaluated for seven bacterial strains isolated from different oil contaminated sites by the Emulsification Index using diesel oil as the hydrocarbon source. Minimum Inhibitory Concentrations of Mg2+, Cr3+ and Cu2+ were determined to identify the less sensitive bacteria in order to select the best strains for bioremediation. Plasmid extraction was also performed in order to search for gene sequences involved with biosurfactant synthesis. All strains were able to emulsify diesel oil. Rhodococcus ruber AC239 presented the best index (58%), followed by other Rhodococcus strains. Pseudomonas aeruginosa, R. ruber AC239, AC87 and R. erytropolis AC272 presented smallest sensitivities to heavy metals used, being suitable for use in sites contaminated with high concentrations of them. No plasmid DNA was detected showing that biosurfactant coding genes should be in the chromosomal DNA.
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  • 27
    ISSN: 1573-6776
    Keywords: biodegradation ; hydrogen peroxide ; Pleurotus ostreatus ; polycyclic aromatic hydrocarbons ; surfactants
    Source: Springer Online Journal Archives 1860-2000
    Topics: Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract The white rot fungus, Pleurotus ostreatus, metabolized four soil adsorbed polycyclic aromatic hydrocarbons: 50% of pyrene (0.1 mg g−1 dry soil), 68% of anthracene and 63% of phenanthrene were mineralized after 21 d. Biodegradation was increased to 75%, 80% and 75%, respectively of the initial concentration when 0.15% Tween 40 was added. Biodegradation of pyrene in the presence of surfactant and H2O2 (1.0 mM) was 90%. Benz[a]pyrene was also oxidized by Pleurotus ostreatus but it is not mineralized.
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  • 28
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    Biotechnology letters 22 (2000), S. 969-975 
    ISSN: 1573-6776
    Keywords: biodegradation ; Irpex lacteus ; lignin peroxidase ; trinitrotoluene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract Up to 200 mg 2,4,6-trinitrotoluene (TNT) l−1 was removed within 12 h after adding it to a 5-day old culture of Irpex lacteus. The initial formation of hydroxylamino-dinitrotoluenes (2- and 4-OHAmDNT) from TNT was detected, followed by their successive transformation to aminodinitrotoluenes (2- and 4-AmDNT). Transformation of TNT to AmDNT via OHAmDNT was fast, but the next step was slow and seemed to be a rate-limiting step in TNT degradation. OHAmDNT isomers were also rapidly transformed by an in vitro enzymatic system. Both the mycelium and extracellular enzymes of I. lacteus were required for the TNT degradation.
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  • 29
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    Water, air & soil pollution 123 (2000), S. 133-146 
    ISSN: 1573-2932
    Keywords: recalcitrat organics ; biodegradation ; biofiltration ; methyl tert-butyl ether ; dichloromethane
    Source: Springer Online Journal Archives 1860-2000
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract Biodegradation of two recalcitrant compounds, dichloromethane and methyl tert-butyl ether was investigated individually and in combination with toluene and benzene. A vapor phase biofilter operating at an air flux of 1 m3/m2·min and an empty bed residence time of 1 minute was used as the reaction system. Inlet recalcitrant contaminant concentrations were typically 35 ppm on a volume basis while the aromatic compound concentrations were varied from 8 ppm to 150 ppm. Dichloromethane removals were not impacted by the introduction of toluene. However, a rapid decrease in methyl tert-butyl ether removal resulted from the initial introduction of toluene. Complete removal of both methyl tert-butyl ether and toluene was achieved within a week of operation.
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  • 30
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    World journal of microbiology and biotechnology 16 (2000), S. 393-395 
    ISSN: 1573-0972
    Keywords: Aerobic bacteria ; biodegradation ; nitroaromatic compounds ; 2,4,6-trinitrotoluene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract Several strains of aerobic bacteria tolerant to some chemical toxins were isolated from the water of man-made Yerevan Lake and from the soil and air of different regions of the city of Yerevan. Some of these bacteria were capable of degrading 2,4,6-trinitrotoluene (TNT) during shake-flask fermentation in liquid medium. Two bacterial strains with good ability to degrade TNT were isolated. These strains showed visible morphological and physiological differences during growth on numerous elective media. The comparative ability of these strains to transform TNT was investigated.
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  • 31
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    World journal of microbiology and biotechnology 16 (2000), S. 95-98 
    ISSN: 1573-0972
    Keywords: Anaerobic ; aerobic ; bioreactors ; biodegradation ; chlorophenols
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract Chlorophenol degradation was studied by combined anaerobic–aerobic treatments as a single or multi-substrate system. 2,4-Dichlorophenol (2,4-DCP) was degraded to the extent of 52 and 78% in up-flow anaerobic sludge blanket (UASB) and aerobic suspended growth (ASG) reactors respectively, at organic loading rates of 0.18 kg/m3/day and hydraulic retention time of 26.4 h in the presence of glucose. The UASB represents the dominating facultative anaerobic microbial population. When the effluent from the anaerobic reactor (UASB) was subjected to aerobic treatment on the ASG reactor, 2,4-DCP and COD removals of 86 and 95% respectively were achieved. Aerobic degradation of chlorophenol by acclimated mixed bacterial isolates was found to be sequential: 2-Chlorophenol (2-CP) and 4-CP were degraded first, followed by 2,4-DCP and 2,4,6-Trichlorophenol (2,4,6-TCP) while the contrary was obtained in anaerobic degradation. In anaerobic degradation by acclimated mixed bacterial cells, 2,4-DCP and 2,4,6-TCP were degraded first followed by mono-chlorophenols. The anaerobic/aerobic bioreactors were most efficient when operated in sequence (series) rather than in parallel.
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  • 32
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    World journal of microbiology and biotechnology 16 (2000), S. 495-497 
    ISSN: 1573-0972
    Keywords: Bacteria ; biodegradation ; 2,4-D ; soil microcosm
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract Bacterial isolates (NJ 10 and NJ 15) capable of degrading the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D) were isolated from agricultural soil by enrichment culture technique. The isolates exhibited substantial growth in mineral salt medium supplemented with 0.1–0.5% of 2,4-D as a sole source of carbon and energy. Based on their morphological, cultural and biochemical characteristics, the isolates NJ 10 and NJ 15 have been identified as Pseudomonas species and Pseudomonas aeruginosa, respectively. Biodegradation studies in a soil microcosm enriched with pure cultures of the isolates demonstrated a time-dependent disappearance of 2,4-D from the 100 mg/kg herbicide-amended soil. The HPLC data analysis revealed 96.6 and 99.8% degradation in the soil inoculated with the pure cultures of isolates NJ 10 and NJ 15, respectively with in 20 days of incubation at 30 °C. Both the isolates showed significant solubilization of inorganic phosphate [Ca3(PO4)2] on the specific Pikovskaya's medium.
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  • 33
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    World journal of microbiology and biotechnology 16 (2000), S. 625-630 
    ISSN: 1573-0972
    Keywords: Aeromonas ; biodegradation ; protease ; psychrotrophic
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract Among 67 psychrotrophic bacterial isolates of Leh, India screened for production of hydrolytic enzymes at 10 °C, four belonging to Aeromonas hydrophila were characterized and evaluated for biodegradation of night soil. All strains produced metalloproteases on a variety of carbon and nitrogen sources. Strains LA1 and LA15 also produced α-amylase and PC5 both α- & β-amylase. No amylase was produced by PN7, however it produced lipase. Casein and glucose induced maximum enzyme activity (protease and amylase) in LA15 and PC5, respectively. In LA1, maximum induction of protease was observed with casein and of amylase with maltose. Corn oil/tributyrin served as the best inducers for protease and lipase production by PN7. A. hydrophila strains were found to be psychrotrophic with optimum growth and enzyme activity at 20 and 37 °C, respectively. Maximum biodegradation of night soil was observed by strain LA1 at 5–20 °C.
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