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  • Electronic Resource  (10)
  • 2005-2009  (5)
  • 1990-1994  (5)
  • 1
    Electronic Resource
    Electronic Resource
    The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists (2005)
    Malden, USA : Blackwell Publishing Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    Details
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract. This revision of the classification of unicellular eukaryotes updates that of Levine et al. (1980) for the protozoa and expands it to include other protists. Whereas the previous revision was primarily to incorporate the results of ultrastructural studies, this revision incorporates results from both ultrastructural research since 1980 and molecular phylogenetic studies. We propose a scheme that is based on nameless ranked systematics. The vocabulary of the taxonomy is updated, particularly to clarify the naming of groups that have been repositioned. We recognize six clusters of eukaryotes that may represent the basic groupings similar to traditional “kingdoms.” The multicellular lineages emerged from within monophyletic protist lineages: animals and fungi from Opisthokonta, plants from Archaeplastida, and brown algae from Stramenopiles.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1550-7408.2005.00053.x
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  • 2
    Electronic Resource
    Electronic Resource
    Saccamminid foraminifers from anoxic sediments: implications for Proterozoic ecosystem dynamics (2005)
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    Details
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Eukaryote origin and earliest diversification occurred in the Proterozoic when Earth's atmosphere was undoubtedly different from that of today. Atmospheric oxygen levels were increasing from the primordial anoxic atmosphere due, for example, to cyanobacterial oxygenic photosynthesis. Late Proterozoic (∼0.6–0.9 Gya) deep-ocean oxygen concentrations are less certain, but geochemical evidence suggests anoxia and hydrogen-sulfide enrichment. It can, therefore, be postulated that initial eukaryotic diversification occurred in oxygen-depleted, sulfide-enriched environments. Foraminifera are aerobes and, thus, not expected in anoxic settings. Recently, however, we found a saccamminid allogromian in a deep-water anoxic, sulfidic setting. Samples were collected from Santa Barbara Basin (California) when bottom-water oxygen was undetectable and sediments smelled strongly of hydrogen sulfide. Foraminiferal SSU rDNA sequences recovered from sediments included one from a previously uncharacterized saccamminid. Ultrastructural analysis indicated the presence of intact Golgi, mitochondria, and prokaryotic endobionts. Saccamminid occurrence in environmental conditions known to exist during the Proterozoic supports the possibility of their origin early in eukaryotic evolution. Extant saccamminids could have competed well in the prokaryote-dominated Proterozoic benthic ecosystem given their diet includes bacteria, bacterial biofilms and unicellular algae. Thus, Proterozoic foraminifers may have been top carnivores.Funded by NASA NRA-01-01-EXB-057, the Geological Society of America's W. Storrs Cole Memorial Research Award, and NSF OPP0003639.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1550-7408.2005.05202003_1_12.x
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  • 3
    Electronic Resource
    Electronic Resource
    The shell or the kernel: biodiversity estimates of benthic foraminifera (2005)
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    Details
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Estimates of protist biodiversity and distribution have until recently relied on the morphological identification of individual cells. The advent of environmental-DNA-based surveys of these protist communities has broadened our understanding of species richness and diversity. A “total-evidence biodiversity” approach gives two benefits. First, it allows “back-comparison” to previous studies of ecosystems, permitting estimates of the amount of cryptic diversity in different sampling regimes (and by extension, the fossil record). Second, it will provide the best possible estimate of the total species richness of current study sites. Here, we use a well-studied benthic protist community, the foraminiferal assemblage of McMurdo Sound, Antarctica, to determine the effective parameters of both detection methods. We find that molecular-based techniques detect well-characterized calcareous species at depths too great to allow calcification, suggesting that these forms may be able to survive without their distinctive tests. “Fragile” taxa also appear to be better represented in molecular surveys than in morphological ones. The strengths of a combined morphological–molecular approach are demonstrated by an assessment of the distribution of two species in the genus Notodendrodes; morphological detection excels in the identification of distinctive, patchily distributed adults, whereas molecular detection with taxon-specific probes enabled identification in less favorable sampling conditions. Such a “broad-plus-deep” approach appears to maximize detection efficiency in this Antarctic setting.Work supported by NSF OPP0003639.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1550-7408.2005.05202003_1_31.x
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  • 4
    Electronic Resource
    Electronic Resource
    Divergent β-tubulins from foraminifera: Implications for microtubule assembly (2005)
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    Details
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Foraminifera utilize an unusual and very rapid microtubule assembly/disassembly system: a state transition between microtubules and helical filaments. The helical filament is an assembly polymorph that forms when the microtubule lattice uncoils into a ribbon of tubulin dimers connected only by lateral subunit/subunit bonds. An unusual β-tubulin sequence, which may be implicated in this process, has previously been reported from the foraminiferan Reticulomyxa filosa. In order to determine the taxonomic distribution and possible significance of this tubulin isoform, we sequenced and analyzed β-tubulin genes from a broad taxonomic range of foraminifera. These genes contain a large number of substitutions, conserved within the group, which may alter the biochemical properties of β-tubulin, especially in regions involved in subunit/subunit binding between α- and β-tubulin in the microtubule lattice. In particular, the M-loop, which is intimately involved in lateral subunit binding, shows only 30% homology to the consensus sequence for eukaryotic β-tubulins. Multiple regions identified to be involved in longitudinal contacts with α-tubulin are also highly substituted. In contrast, the foraminiferal α-tubulin is well conserved with its homologs in other organisms. We suggest that these alterations to the consensus eukaryotic β-tubulin sequence may help to explain the unusual assembly properties of foraminiferal microtubules.This work was supported by NSF OPP0003639.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1550-7408.2005.05202003_1_82.x
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  • 5
    Electronic Resource
    Electronic Resource
    Foraminiferal evolution as revealed by β-tubulin data (2005)
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    Details
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Foraminiferal taxonomy is traditionally based on morphological characteristics, particularly the structure and composition of the test (shell). Recently, a comprehensive SSU-based molecular phylogeny confirmed some multi-chambered foraminiferal groups while enhancing our understanding of the single-chambered, or the so-called “allogromiid”, taxa. However, some relationships, such as the origin of the foraminiferal order Miliolida, remain unresolved, suggesting an approach involving multiple data sources may improve understanding. Here, we discuss the evolutionary implications of β-tubulin genes from several species of foraminifera. Foraminiferal β-tubulin is highly divergent, possibly indicating a period of accelerated evolution of this gene at the base of the foraminiferal lineage, but it is well-conserved within the group. We show its utility in helping to resolve the phylogenetic position of Miliammina fusca, a foraminiferan whose proper classification has been debated for 70 years. M. fusca is a morphological “chimera”, and we show that its placement in SSU trees is not particularly robust. However, β-tubulin data assigns Miliammina to the Miliolida, some of whose members show a similar chamber coiling pattern. This placement agrees with an earlier observation that M. fusca's actin isoforms more closely resemble those of traditional milolids. This finding implies that test formation can revert from calcareous to agglutinated, suggesting a reexamination of some relationships inferred from the fossil record.Supported by NSF OPP0003639.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1550-7408.2005.05202003_1_32.x
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  • 6
    Electronic Resource
    Electronic Resource
    Extracellular Matrix Augments Mechanical Properties of Pseudopodia in the Carnivorous Foraminiferan Astrammina rara: Role in Prey Capture (1992)
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 39 (1992), S. 0 
    Details
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The seemingly delicate, strand-like pseudopodia of Astrammina rara, a carnivorous benthic foraminiferan, adhere to and withstand the rigorous movements of meiofaunal prey. Previous electron microscopic studies identified two novel structures that might account for the unusual tensile properties of these pseudopodia: 1) an extensive, coiled microtubule cytoskeleton and 2) a fibrous extracellular matrix vesting the pseudopodial surface. In the present study, we found that pseudopodial networks microsurgically removed from A. rara's cell body captured Artemia metanauplii as efficiently as intact organisms, and therefore used them to test the role of microtubules and extracellular matrix components in augmenting pseudopodial strength. Agents that specifically disassemble micro-tubules (1 mM colchicine or 20 μM nocodazole) or generally disrupt pseudopodial integrity (heat, 10 mM formaldehyde, 1 mg/ml saponin) failed to inhibit prey capture. All of these treatments left the extracellular matrix intact as revealed by immunofluorescence and scanning electron microscopy. The elastic and tensile properties of the extracellular matrix, isolated by solubilization of pseudopodial cytonhsm using the nonionic detergent Triton X-100, were similar to those of intact pseudopodial networks when assayed with calibrated microneedles or a flexible rubber substrate. These observations indicate that A. rara uses a fibrous extracellular matrix to augment cytoplasmic tensile properties.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1550-7408.1992.tb04455.x
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  • 7
    Electronic Resource
    Electronic Resource
    Structure, Bioadhesive Distribution and Elastic Properties of the Agglutinated Test of Astrammina rara (Protozoa: Foraminiferida) (1993)
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 40 (1993), S. 0 
    Details
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . The fine structure, elastic properties, and distribution of the fibrous, meshlike cement (bioadhesive) were studied for the test of the antarctic agglutinated foraminiferan Astrammina rara. Grain-size analysis of particles incorporated into the test compared with adjacent sediment indicates that A. rara is grain-size selective. Fractured tests curl inward, suggesting that the test is under tension—an impression substantiated by micromanipulation observations. Changes in test appearance were examined by scanning electron microscopy after sequential chemical treatments combined with ultrasonication. Organic fibrils securing fine-grained particulates on the test exterior were removed during initial sonication. A veil of fibrous organic material lining the test interior (i.e. inner organic lining) was removed by treatment with a nonionic detergent, revealing ligamentous cables of bioadhesive securely joining large grains. These cables are partially disrupted by treatment with sodium dodecyl sulfate, and further disrupted by disulfide reducing agents, suggesting that protein is an integral adhesive component. The large detrital grains incorporated into the test are arranged in an interlocked, optimally packed fashion. Together, these observations indicate that the seemingly simple spherical architecture of A. rara's test is in fact quite complex, consisting of large grains compressed by tensile cables of a proteinaceous bioadhesive, with additional rigidity supplied by fine particulate “mortar” deposited externally.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1550-7408.1993.tb04891.x
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  • 8
    Electronic Resource
    Electronic Resource
    Diffuse kinetochores and holokinetic anaphase chromatin movement during mitosis in the hemipteran Agallia constricta (leafhopper) cell line AC-20 (1990)
    New York, NY : Wiley-Blackwell
    Cell Motility and the Cytoskeleton 15 (1990), S. 245-259 
    Details
    ISSN: 0886-1544
    Keywords: polycentric chromosome ; light microscopy ; electron microscopy ; high-pressure freezing ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Mitosis in the hemipteran Agallia constricta (leafhopper) cell line AC-20 was examined by light microscopy of living and fixed cells. During early prometaphase the numerous small (0.30-3.0-μm) chromosomes appear as discrete units that lack a primary constriction. However, by late prometaphase the chromosomes are tightly packed at the spindle equator and are no longer clearly resolvable as individuals. When viewed from the side the metaphase chromatin appears as a 2-3-μm wide band that spans the width of the spindle; when viewed from the pole it appears as a fenestrated disk. The metaphase chromatin splits at anaphase into two sister chromatin plates, each of which exhibits holokinetic poleward movement, i.e., all parts of each plate move as a single unit with the same velocity. In many early-to-mid anaphase cells the separating sister plates are connected by chromatin-containing bridges that break as anaphase progresses. Ultrastructural analyses of serial thick and thin sections from cells fixed by conventional, OsO4/KFeCN, or high pressure rapid freezing methods, reveal that by metaphase all of the chromosomes are interconnected to form a large, irregularly shaped fenestrated disk of chromatin. Similar analyses reveal that adjacent chromatids remain interconnected throughout anaphase. Each disk of metaphase and anaphase chromatin contains numerous kinetochores recessed within its polefacing surface. Kinetochores consist of a fine, faintly staining fibrillar material arranged along the chromatin surface as thin (0.1-0.3 μm dia.) rods varying considerably (0.15-2.3 μm) in length. From these observations we conclude that the polycentric metaphase chromatin of A. constricta, and its holokinetic behavior during anaphase, arises from the aggregation or cohesion of smaller prometaphase chromosomes, each of which contains a single, diffuse kinetochore.
    Additional Material: 22 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/cm.970150407
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  • 9
    Electronic Resource
    Electronic Resource
    Estrogen-stimulation of postconfluent cell accumulation and foci formation of human MCF-7 breast cancer cells (1991)
    New York, N.Y. : Wiley-Blackwell
    Journal of Cellular Biochemistry 45 (1991), S. 177-187 
    Details
    ISSN: 0730-2312
    Keywords: estrogen dependent ; tumor cell heterogeneity ; postconfluent growth ; antiestrogen ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Foci, nodules of cellular overgrowth, that appear after confluence are an in vitro characteristic of malignant transformation. A well-studied in vitro model of estrogen-dependent tumors is the MCF-7 cell line, derived from a pleural metastasis of a human breast adenocarcinoma. We report that cultivation of MCF-7 cells, using routine methods, results in extensive estrogen-stimulated postconfluent cell accumulation characterized by discrete three-dimensional arrays. Side view Nomarski optical sections revealed these to be principally multicellular foci with occasional domes and pseudoacinar vacuoles. This effect on MCF-7 cell growth occurs in media containing fetal bovine serum but not with calf serum or charcoal-dextran-treated fetal bovine serum unless supplemented with estrogens. Foci formation starts 5-6 days after confluence, and the number of foci generated is a function of the concentration of added estrogens. Foci formation is suppressed by the antiestrogens Tamoxifen and LY 156758. Addition of progesterone, testosterone, or dexamethasone had little or no effect, while various estrogens (ethinyl estradiol, diethylstilbestrol, and moxestrol) induced foci development. Clones derived from single cells of the initial MCF-7 population revealed a wide variance in estrogen-induced foci formation, demonstrating heterogeneity of this tumor cell line. The postconfluent cell growth of the estrogen receptor-deficient cell line, MDA-MB-231, contrasted with MCF-7 by developing an extensive multilayer morphology devoid of discrete structures. The tumorigenic potential of the MCF-7 cells used in our experiments was confirmed by their estrogen-dependent growth in immunosuppressed male BDF1 mice.These data suggest an estrogen receptor-based mechanism for the development of multicellular foci during postconfluent growth of MCF-7 cells. After confluence, foci, in contrast to the quiescent surrounding monolayer, retain proliferating cells. Focus formation, therefore, reflects the heterogeneous responsiveness of these cells to estrogens and should provide a model permitting in vitro comparisons between the progenitor cells of multicellular foci and the monolayer population.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/jcb.240450209
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  • 10
    Electronic Resource
    Electronic Resource
    Morphological and proliferative responses of endothelial cells to hydrostatic pressure: Role of fibroblast growth factor (1993)
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 157 (1993), S. 603-614 
    Details
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Subconfluent bovine pulmonary artery endothelial cells on rigid substrates were exposed to 1.5-15 cm H2O sustained hydrostatic pressure for up to 7 days and exhibited elongation, cytoskeletal rearrangement, increased cell proliferation, and bilayering. The role of basic fibroblast growth factor (bFGF) in the mechanism(s) of these endothelial cell responses to sustained hydrostatic pressure was investigated. Evidence that bFGF was released from endothelial cells exposed to sustained hydrostatic pressure or compression was provided by the following experimental results: (1) Cells exposed to control (3 mm H2O) pressure displayed intense nuclear and cytoplasmic bFGF staining by immunocytochemical techniques; this staining was absent in cells exposed to 10 cm H2O for 7 days. (2) Conditioned medium from endothelial cells exposed to 10 cm H2O for 7 days contained at ansferable, growth-promoting activity exhibiting heparin-Sepharose affinity, lability to both heat and freeze/thawing, and neutralization by anti-bovine bFGF. (3) Suramin (0.1 mM), a growth-factor receptor inhibitor, abrogated the proliferative and morphological responses of endothelial cells exposed to sustained hydrostatic pressure. Endothelial cells exposed to elevated hydrostatic pressure demonstrated no detectable decrement in cell viability as assessed by Trypan blue exclusion. The results of the present study indicate that hydrostatic pressure or compression can induce bFGF release from endothelial cells independent of cell injury or death; bFGF is subsequently responsible for the morphological, proliferative, and bilayering responses of endothelial cells to hydrostatic pressure. © 1993 Wiley-Liss, Inc.
    Additional Material: 10 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/jcp.1041570321
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