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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    European biophysics journal 27 (1998), S. 63-68 
    ISSN: 1432-1017
    Keywords: Key words DNA ; Enzyme activity ; Atomic force microscopy ; Exonuclease ; BAL 31 nuclease
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Physics
    Notes: Abstract We have applied atomic force microscopy (AFM) to the measurement of BAL 31 nuclease activities. BAL 31 nuclease, a species of exonuclease, is used to remove unwanted sequences from the termini of DNA before cloning. For cutting out only the appropriate sequences, it is important to know the nuclease properties, such as digestion speed and the distribution of the lengths of the digested DNA. AFM was used to obtain accurate measurements on the lengths of DNA fragments before and after BAL 31 nuclease digestion. We analyzed 4 DNAs with known number of base pairs (288, 778, 1818, and 3162 base pairs) for correlating the contour length measured by AFM with the number of base pairs under the deposition conditions used. We used this calibration for analyzing DNA degradation by BAL 31 nuclease from the AFM measurement of contour lengths of digested DNAs. In addition, the distribution of digested DNA could be analyzed in more detail by AFM than by electrophoresis, because digested DNA were measured as a population by electrophoresis, but were measured individually by AFM. These results show that AFM will be a useful new technique for measuring nuclease activities.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1615-6102
    Keywords: Action spectrum ; Chroomonas ; Cryptomonas ; Cryptophyte ; Eyespot ; Phototaxis ; Phycobilin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A comparative action spectroscopical study was made on phototaxis in two genera of cryptomonads (cryptophyte flagellate algae), namely,Cryptomonas (rostratiformis) andChroomonas (nordstedtii andcoeruled). The two genera differ in their characteristic phycobilin pigmentation and, among three species, onlyChroomonas coerulea possesses an eyespot. The two species with no eyespot,Cryptomonas rostratiformis andChroomonas nordstedtii, exhibited positive phototaxis, showing very similar action spectra characterized by a broad band in the region from 450 nm to 650 nm, with an action maximum at about 560 nm; these features are essentially the same as those observed previously forCryptomonas strain CR-1. InCryptomonas rostratiformis, a small peak was also found at 280 nm in the UV-B/C region.Chroomonas coerulea, with eyespot, did not exhibit distinct positive phototaxis in a wide spectral region at any given, even very low, light intensity, but exhibited negative phototaxis of spectral sensitivity maximal at 400–450 nm. These results indicate that the positive phototaxis ofCryptomonas (rostratiformis and CR-1) andChroomonas nordstedtii is mediated by the same, yet unidentified photoreceptor(s).Chroomonas nordstedtii, possessing no phycoerythrin absorbing at 545 nm, also exhibits positive phototaxis at ca. 560 nm, and this result disfavors the so far proposed possibility that the positive phototaxis of the cryptophytes may be mediated by phycobilin pigments. On the other hand, the spectral characteristics of negative phototaxis ofChroomonas coerulea can possibly be ascribed to the presence of an eyespot.
    Type of Medium: Electronic Resource
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