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  • 1
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 108 (1998), S. 3096-3113 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We investigate ultrafast multi-state nuclear dynamics in a triatomic cluster. In particular, we explore how the intracluster nuclear dynamics of the Ag3−/Ag3/Ag3+ system is reflected in the femtosecond pump-probe negative ion-to neutral-to positive ion (NENEPO) signals. The nuclear dynamics is based on classical trajectories on the ground electronic adiabatic state potential hypersurfaces obtained from accurate ab initio quantum chemistry calculations. The nuclear dynamics of Ag3 initiated from the linear transition state involves distinct sequential processes of configurational relaxation to the triangular configuration, intracluster collisions, and the onset of IVR, resonant, and dissipative IVR, and vibrational equilibration. We determined the timescales for these processes and discussed their dependence on the initial cluster temperature. The Wigner representation of the density matrix was utilized to simulate the NENEPO-zero kinetic energy (NENEPO-ZEKE) signal and the total (integrated over the photoelectron energy) NENEPO signal. We show how geometrical change, completion of IVR and vibrational coherence effects can be identified in the NENEPO signals. A comparison of the calculated NENEPO signals with the available experimental data is presented. © 1998 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 0948-5023
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular modeling 2 (1996), S. 354-357 
    ISSN: 0948-5023
    Keywords: Ab inito ; DFT ; Zinc complexes ; Hydration energies
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Recent ab initio studies reported in the literature have challenged the mechanistic assignments made on the basis of volume of activation data [1,2]. In addition to that ab initio molecular orbital calculations on hydrated zinc(II)-ions were used to elucidate the general role of this ion in metalloproteins [3]. Due to our interest in both inorganic reaction mechanisms and enzymatic catalysis we started a systematic investigation of solvent exchange processes on divalent zinc-ion using density functional calculations. Our investigations cover aqua complexes of the general form [Zn(H2O)n]2+·mH20 with n=3-6 and m=0-2, where n and m represent the number of water molecules in the coordination and solvation sphere, respectively. The complexes [Zn(H2O)5]2+·2H2O and [Zn(H2O)4]2+·2H2O turnend out to be the most stable zinc complexes with seven and six water molecules, respectively. This implies that a heptacoordinated zinc(II) complex, where all water molecules are located in the co-ordination sphere, should be energetically highly unfavorable and that [Zn(H2O)6]2+ can quite readily push two coordinated water molecules into the solvation sphere. For the pentaqua complex [Zn(H2O)5]2+ only one water molecule is easily lost to the solvation sphere, which makes the [Zn(H2O)4]2+·H2O complex the most favorable in order to consider the limiting dissociative and associative water exchange process of hexacoordinated zinc(II). The dehydration and hydration energies using the most stable zinc(II) complexes [Zn(H2O)4]2+·2H2O, [Zn(H2O)5]2+·2H2O and [Zn(H2O)4]2+·H2O were calculated to be 24.1 and -21.0 kcal/mol, respectively.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 0948-5023
    Keywords: Keywords Human Carbonic Anhydrase II ; Semiempirical MO Theory ; AM1 ; Enzyme Catalysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The approach of CO2 to a series of active site model complexes of human carbonic anhydrase   II (HCAII) and its catalytic hydration to bicarbonate anion have been investigated using semiempirical MO theory (AM1). The results show that direct nucleophilic attack of zinc-bound hydroxide to the substrate carbon occurs in each model system. Further rearrangement of the bicarbonate complex thus formed via a rotation-like movement of the bicarbonate ligand can only be found in active site model systems that include at least one additional water molecule. Further refinement of the model complex by adding a methanol molecule to mimic Thr-199 makes this process almost activationless. The formation of the final bicarbonate complex by an internal (intramolecular) proton transfer is only possible in the simplest of all model systems, namely {[Im3Zn(OH)]+·CO2}. The energy of activation for this process, however, is 36.8 kcal·mol−1 and thus too high for enzymatic catalysis. Therefore, we conclude that within the limitations of the model systems presented and the level of theory employed, the overall mechanism for the formation of the bicarbonate complex comprises an initial direct nucleophilic attack of zinc-bound hydroxide to carbon dioxide followed by a rotation-like rearrangement of the bicarbonate ligand via a penta-coordinate Zn2+ transition state structure, including the participation of an extra active site water molecule.
    Type of Medium: Electronic Resource
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