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  • Analytical Chemistry and Spectroscopy  (1)
  • Key words Rubredoxin  (1)
  • 1
    ISSN: 1432-1327
    Keywords: Key words Rubredoxin ; Mössbauer ; Electron paramagnetic resonance ; Magnetic circular dichroism ; Radiolytic reduction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract Rubredoxins contain a mononuclear iron tetrahedrally coordinated by four cysteinyl sulfurs. We have studied the wild-type protein from Clostridium pasteurianum and two mutated forms, C9S and C42S, in the oxidized and reduced states, with Mössbauer, integer-spin EPR, and magnetic circular dichroism (MCD) spectroscopies. The Mössbauer spectra of the ferric C42S and C9S mutant forms yielded zero-field splittings, D=1.2 cm−1, that are about 40% smaller than the D-value of the wild-type protein. The 57Fe hyperfine coupling constants were found to be ca. 8% larger than those of the wild-type proteins. The present study also revealed that the ferric wild-type protein has δ=0.24±0.01 mm/s at 4.2 K rather than δ=0.32 mm/s as reported in the literature. The Mössbauer spectra of both dithionite-reduced mutant proteins revealed the presence of two ferrous forms, A and B. These forms have isomer shifts δ=0.79 mm/s at 4.2 K, consistent with tetrahedral Fe2+(Cys)3(O-R) coordination. The zero-field splittings of the two forms differ substantially; we found D=−7±1 cm−1, E/D=0.09 for form A and D=+6.2±1.3 cm−1, E/D=0.15 for form B. Form A exhibits a well-defined integer-spin EPR signal; from studies at X- and Q-band we obtained g z =2.08±0.01, which is the first measured g-value for any ferrous rubredoxin. It is known from X-ray crystallographic studies that ferric C42S rubredoxin is coordinated by a serine oxygen. We achieved 75% reduction of C42S rubredoxin by irradiating an oxidized sample at 77 K with synchrotron X-rays; the radiolytic reduction produced exclusively form A, suggesting that this form represents a serine-bound Fe2+ site. Studies in different buffers in the pH 6–9 range showed that the A:B ratios, but not the spectral parameters of A and B, are buffer dependent, but no systematic variation of the ratio of the two forms with pH was observed. The presence of glycerol (30–50% v/v) was found to favor the B form. Previous absorption and circular dichroism studies of reduced wild-type rubredoxin have suggested d-d bands at 7400, 6000, and 3700 cm−1. Our low-temperature MCD measurements place the two high-energy transitions at ca. 5900 and 6300 cm−1; a third d-d transition, if present, must occur with energy lower than 3300 cm−1. The mutant proteins have d-d transitions at slightly lower energy, namely 5730, 6100 cm−1 in form A and 5350, 6380 cm−1 in form B.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 0749-1581
    Keywords: 1H 2D NMR ; Ferredoxins ; Iron-Sulphur Redox protein ; Clostridium ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A 1H 2D NMR investigation of the oxidized 2[4Fe-4S] ferredoxins from Clostridium pasteurianum and C. acidurici was carried out. Sequential assignments through standard HOHAHA and NOESY procedures were obtained for the 2-7, 23-36 and 52-55 sequence segments of both proteins. Additional assignments of the 15-17 and 44-46 segments, linking the clusters, and of a few other residues were made by taking advantage of sequence differences between the two proteins. In summary, only the immediate vicinity of the cysteine ligands could not be identified by the procedure. In these small 2[4Fe-4S] ferredoxins, a large proportion of the resonances is sensitive to the presence of the paramagnetic centres and does not easily display NOE correlations. Nevertheless, long-range NOE peaks that could be observed shed light on the solution structure of these proteins. The close interaction between the N- and C-termini, previously evidenced by x-ray crystallography, was confirmed for both proteins in solution. Small differences between the ferredoxins from C. pasteurianum and C. acidurici were detected in the flexible and variable external 25-30 loop and also in the region separating the clusters. These differences may correlate with small dissimilarities previously observed between some properties of these ferredoxins.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
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