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  • Bayesian inference  (2)
  • Binding site (ethylene)  (2)
  • Ethylene
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    International journal of legal medicine 110 (1997), S. 244-250 
    ISSN: 1437-1596
    Keywords: Key words DNA profiling ; Forensic identification ; Bayesian inference ; Likelihood ratio ; Coancestry ; coefficient ; Probability ; Statistics ; PCR ; STR
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine , Law
    Notes: Abstract A previous paper in this journal has described the conventional statistical analysis of three databases (Caucasian, Afro-Caribbean and Asians from the Indian subcontinent) where individuals are typed at six short tandem repeat (STR) loci. This paper presents a Bayesian analysis of the same data and the approach is centred on the concept of estimating coancestry coefficients from mixed databases. Posterior distributions for the three databases are presented and discussed and the consequences of implementing bootstrap estimation procedures are also shown.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1432-2048
    Keywords: Key words:Arabidopsis (GTP binding) ; Cytokinin ; Ethylene ; Protein Phosphorylation ; GTP-binding proteins (small)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract. Binding of [α-32P]guanosine 5′-triphosphate ([α-32P]GTP) has been demonstrated in a Triton X-100-solubilised membrane fraction from leaves of Arabidopsis thaliana (L.) Heynh. Binding was stimulated by 1 h pre-treatment of leaves with ethylene and this effect was antagonised by the inclusion of N6-benzyladenine in the medium used for homogenisation. The ethylene-insensitive mutants eti5 and etr showed contrasting responses. In eti5 the constitutive level of GTP binding was higher than in the wild type whereas in etr the level was much lower. Neither ethylene nor cytokinin affected GTP binding in the mutants. The GTP-binding activity was localised in two bands at 22 and 25 kDa, both of which were immunoprecipitated by anti-pan-Ras antibodies, indicating that the activity is due to small GTP-binding proteins. In a similar membrane fraction, ethylene was shown to increase protein phosphorylation and benzyladenine antagonised this effect. In eti5 the constitutive level of protein phosphorylation was higher than in the wild type, but benzyladenine increased activity substantially while ethylene was without effect. In etr, protein phosphorylation was lower than in the wild type, ethylene was without effect, but cytokinin increased activity. A protein of Mr 17 kDa was detected on gels using antibodies to nucleoside diphosphate kinase. Phosphorylation of this protein was upregulated by ethylene but nucleoside diphosphate kinase activity was unaffected. The results are compared with the effect of the two hormones on the senescence of detached leaves and discussed in relation to pathways proposed for ethylene signal transduction.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1432-2048
    Keywords: Ethylene ; Guanosine ; 5′-triphosphate binding ; Guanosine 5′-triphosphate-binding proteins (small) ; Membrane (GTP binding) ; Pisum ; Signal transduction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Binding of [35S]guanosine 5′-o-(3-thiotriphosphate) (GTPγS) and of [α-32P]guanosine triphosphate ([α-32P]GTP) has been demonstrated in membrane preparations from epicotyl tips of etiolated plants ofPisum sativum L.; binding has also been shown in KCl-and Triton X-100-solubilised fractions from these membranes. Binding of GTPγS was of high affinity (K D = 3.17 × 10−8M), showed high specificity for guanine nucleotides and was stimulated by Mg2+ in the micromolar range. Binding was associated with only low levels of guanosine 5′-triphosphatase activity and was unaffected by treatment with mastoparan. In-vivo application of ethylene at 1 μl·l−1 stimulated GTP binding in fractions released from membranes by treatment with 750 mM KCl and Triton X-100. Affinity probing with ([α-32P]GTP) showed pronounced specific GTP binding to polypeptide(s) with relative molecular mass (Mr) of 28 kDa. The binding was stimulated markedly by ethylene and to some extent by AIF4 −. Mouse monoclonal anti-pan-ras antibodies cross-reacted with several polypeptides in the 20 to 30-kDa region, and an [α-32P]GTP-labelled protein of Mr 28 kDa was precipitated by the same antibodies. The data indicate that the transduction of the ethylene signal may involve the intervention of GTP-binding proteins similar to the small monomeric GTP-binding proteins.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Planta 164 (1985), S. 272-277 
    ISSN: 1432-2048
    Keywords: Binding site (ethylene) ; Ethylene (binding site) ; Phaseolus (ethylene binding)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The solubilised ethylene-binding site (EBS) of Phaseolus vulgaris L. cotyledons is an asymmetrical protein with a sedimentation coefficient of 2 S and a Stoke's radius of 6.1 nm (determined by ultracentrifugation on isokinetic gradients and gel-permeation chromatography, respectively). The molecular weight and frictional ratio were calculated as 52 000–60 000 and 2.37–2.48, respectively. The EBS has an isoelectric point at between pH 3–5, determined by isoelectric focussing and exhibits a negative charge at pH 8 during non-denaturing electrophoresis. The electrical charge on the EBS is shielded; the EBS does not bind to anion-exchange media under the experimental conditions reported here, is not precipitated by ammonium sulphate and does not precipitate at its isoelectric pH. The EBS preferentially partitions into detergent phases. The results indicate that the EBS is a hydrophobic protein complexed with detergent in aqueous solution. The techniques used to characterise the EBS also resulted in varying degress of purification.
    Type of Medium: Electronic Resource
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  • 5
    ISSN: 1432-2048
    Keywords: Binding site (ethylene) ; Ethylene (binding site) ; Phaseolus (ethylene binding)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The ethylene-binding site (EBS) from Phaseolus vulgaris cv. Canadian Wonder cotyledons can be solubilised from 96,000 g pelleted material by Triton X-100 or sodium cholate. Extraction of 96,000 g pellets with acetone, butanol or butanol and ether results in a total loss of ethylene-binding activity. Like the membrane-bound form, the solubilised EBS has an apparent KD(liquid) of 10-10 M at a concentration of 32 pmol EBS per gram tissue fresh weight. Propylene and acetylene act as competitive inhibitors, carbon dioxide appears to promote ethylene binding and ethane has no significant effect. The solubilised EBS is completely denatured affect. The solubilised EBS is completely denatured after 10 min at 70°C, by 1 mM mercaptoethanol and 0.1 mM dithiothreitol, but not by trypsin or chymotrypsin. However, solubilisation decreases the rate constant of association from 103 M-1 s-1 to 101–102 M-1 s-1 and hence does not permit experimental determination of the rate constant of dissociation. The pH optimum for ethylene binding is altered from the range pH 7–10 in the membrane-bound form to the pH range 4–7 in the solubilised form. The EBS appears to be a hydrophobic, intergral membrane protein, which requires a hydrophobic environment to retain its activity. Partitioning of the EBS into polymer phases is determined by the detergent used for solubilisation indicating that when solubilised, the EBS forms a complex with detergent molecules.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Statistics and computing 6 (1996), S. 277-287 
    ISSN: 1573-1375
    Keywords: Bayesian inference ; contingency tables ; Gibbs sampling ; graphical methods ; hypothesis testing ; independence ; intraclass tables ; model comparison ; predictive densities ; quasisymmetry ; simulation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science , Mathematics
    Notes: Abstract In this paper we present a simulation and graphics-based model checking and model comparison methodology for the Bayesian analysis of contingency tables. We illustrate the approach by testing the hypotheses of independence and symmetry on complete and incomplete simulated tables.
    Type of Medium: Electronic Resource
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