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  • 1
    Digitale Medien
    Digitale Medien
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 100 (1994), S. 8257-8264 
    ISSN: 1089-7690
    Quelle: AIP Digital Archive
    Thema: Physik , Chemie und Pharmazie
    Notizen: Cluster models of increasing complexity have been used to model magnetic interactions in KNiF3. These clusters contain two or four magnetic centers plus the bridge F− anions and different representations of the remaining of the crystal. The magnetic coupling constant has been obtained by computing ab initio wave functions for different spin states. These wave functions explicitly include internal and external correlation effects. Several sets of Gaussian functions have been tested and many sets of molecular orbitals have been considered in order to study the physical origin of magnetism in KNiF3. The calculated magnetic coupling constant differs from model to model but shows a fairly good convergence to the experimental result. The use of different cluster models permits to separate the magnetic coupling constant in several contributions. These are the delocalization of magnetic orbitals, the external correlation, and the collective effects normally hidden in the two body operator of the Heisenberg Hamiltonian.
    Materialart: Digitale Medien
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  • 2
    Digitale Medien
    Digitale Medien
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 101 (1994), S. 7683-7685 
    ISSN: 1089-7690
    Quelle: AIP Digital Archive
    Thema: Physik , Chemie und Pharmazie
    Notizen: The dependence of the magnetic coupling constant, J, with the pressure has been studied by an ab initio cluster model approach in a typical ionic solid such as KNiF3. By computing J at different values of the lattice parameter R, we predict a power law of the form ||J||≈R−n with 10.5〈n〈13.3 in good agreement with the suggested experimental value. This behavior is found even for the simplest Ni2F cluster model described by a complete active space configuration interaction wave function in which the active orbitals correspond to the open shell of each Ni2+ cation.
    Materialart: Digitale Medien
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  • 3
    ISSN: 1573-4951
    Schlagwort(e): MM and MD techniques ; homopeptides ; parametrization
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract The suitability of ab initio, semiempirical and density functional methods as sources of stretching and bending parameters has been explored using the PAPQMD (Program for Approximate Parametrization from Quantum Mechanical Data) strategy. Results show that semiempirical methods provide parameters comparable to those compiled on empirical force fields. In this respect the AM1 method seems to be a good method to obtain parameters at a minimum computational cost. On the other hand, harmonic force fields initially developed for proteins and DNA have been extended to include compounds containing highly strained three-membered rings, like 1-aminocyclopropane-1-carboxylic acid. For this purpose the cyclopropyl ring has been explicitly parametrized at the AM1 level considering different chemical environments. Finally, the new set of parameters has been used to investigate the conformational preferences of homopeptides constituted by 1-aminocyclopropane-1-carboxylic acid. Results indicate that such compounds tend to adopt a helical conformation stabilized by intramolecular hydrogen bonds between residues i and i+3. This conformation allows the arrangement of the cyclic side chains without steric clashes.
    Materialart: Digitale Medien
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  • 4
    Digitale Medien
    Digitale Medien
    Springer
    Journal of computer aided molecular design 8 (1994), S. 441-448 
    ISSN: 1573-4951
    Schlagwort(e): Dehydroalanine ; 310-Helix ; Extended conformation ; Conformational analysis ; Cooperative effects
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Summary A quantum-chemical study of the chain-length dependent stability of the extended, 27-ribbon and 310-helix conformations in dehydroalanine (ΔAla) oligopeptides has been performed by using both semiempirical AM1 and ab initio 4–31G methodologies. The validity of both methods in the study of the conformational properties of ΔAla oligopeptides was tested first on the dipeptide. The results of this test showed that 4–31G and AM1 calculations are in good agreement with 6–31G* calculations and experimental data. In order to monitor the conformational conversions, ΔAla oligopeptides comprising two to six residues were constructed. Molecular geometries were fully optimized using AM1, and the final conformations were verified to be minima by analysis of the corresponding second-derivative matrices. Conformational studies revealed that the 310-helix is stabilized with respect to the 27-ribbon when the number of residues is three or four, at the AM1 and ab initio 4–31G level respectively, while the extended form is the most stable in all the calculations performed. On the other hand, if a linear behaviour is assumed for longer chains, our calculations show a trend that would predict a conversion from extended form to 310-helix in oligopeptides with around six (ab initio 4–31G) or eight (AM1) ΔAla residues. In order to explain these conformational changes, the cooperative effects for the different conformers were investigated. Large cooperative energy effects were found for the 310-helix conformation.
    Materialart: Digitale Medien
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  • 5
    Digitale Medien
    Digitale Medien
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 52 (1994), S. 281-293 
    ISSN: 0020-7608
    Schlagwort(e): Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Quelle: Wiley InterScience Backfile Collection 1832-2000
    Thema: Chemie und Pharmazie
    Notizen: The electronic structure of the ground electronic state and of some special charge-transfer excited states in ionic solids is examined from the ab initio cluster model approach. Different ab initio wave functions, including a frozen orbital approach, the Hartree-Fock self-consistent field, and multireference configuration interaction wave functions, are considered and analyzed using different theoretical techniques. We explicitly consider some alkaline-earth oxides such as CaO, a more difficult case such as A12O3, a transition-metal oxide such as NiO, and a system with a more complicated structure such as KNiF3. Analysis of ab initio wave functions in terms of valence bond components shows that all these compounds are largely ionic, thus supporting the simple picture arising from the ionic model. However, the nature of the excited states is more complex. Alkaline-earth oxides lowest excited states are essentially described as charge-transfer excitations dominated by a single resonant valence bond structure and the calculated energy difference is comparable to the experimental optical gap. In the case of A12O3, the electronic spectra presents excitonic features and the local charge-transfer excitation excited states provide a reasonable representation of these phenomena. Finally, several different valence bond structures are present in the lowest electronic states of KNiF3. © 1994 John Wiley & Sons, Inc.
    Zusätzliches Material: 1 Ill.
    Materialart: Digitale Medien
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  • 6
    Digitale Medien
    Digitale Medien
    New York : Wiley-Blackwell
    Biopolymers 36 (1995), S. 71-82 
    ISSN: 0006-3525
    Schlagwort(e): Chemistry ; Polymer and Materials Science
    Quelle: Wiley InterScience Backfile Collection 1832-2000
    Thema: Chemie und Pharmazie
    Notizen: The conformational preferences of dehydroalanine (ΔAla) were examined through ab initio calculations. The geometries of the minimum energy conformations for N-formyldehydro alanilamide and N-acetyl-N′-methylamide of dehydroalanine were determined by gradient optimization at the HF/6-31G* level, and correlation corrections were examined with MP2 single-point energy calculations. Furthermore, HF/3-21G ab initio geometry optimizations were performed on nine conformations of the model tripeptide N-acetyl-N′-methylamide of didehydroalanine. The results indicate that the C5 is the lowest energy conformation at all levels of theory. However, the relative energy of the helix conformation decreases when the number of ΔAla residues in the peptide chain increases. On the other hand, significant variations of the geometry upon conformational change were observed for the three compounds investigated. These results permit to extract important conformationally dependent geometry trends. The results of this study were compared to x-ray diffraction data on single crystals of dehydroalanine-containing peptides. © 1995 John Wiley & Sons, Inc.
    Zusätzliches Material: 2 Ill.
    Materialart: Digitale Medien
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