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  • 1
    Digitale Medien
    Digitale Medien
    Springer
    Journal of comparative physiology 143 (1981), S. 435-441 
    ISSN: 1432-1351
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie , Medizin
    Notizen: Summary 1. A spontaneous EOD response to sound is described in two gymnotoids of the pulseElectricOrganDischarge (EOD) type,Hypopomus andGymnotus, and in one mormyrid,Brienomyrus (Figs. 2–4). 2. In all three species, the EOD response to the sound onset was a transient EOD rate increase. In the low EOD rateHypopomus (3–6 EODs/s at rest) the first, second, or third EOD interval following sound onset was significantly shorter than the average EOD interval before stimulation. The shortest latency found was 100 ms, the longest ca. 1.2 s.Gymnotus (around 50 EODs/s at rest) responded similarly, but the third interval after sound onset was the first to be affected even at highest intensities (shortest latencies approx. 60 ms; latencies 〉 0.5 s at low sound intensities). InBrienomyrus (4–8 EODs/s at rest) the response occurred already at the first EOD interval after sound onset. 3. An EOD sound response was recorded inHypopomus and inGymnotus up to 5,000 Hz sound frequency (in oneGymnotus individual: up to 7,000 Hz). Due to technical limitations the low frequency limit of the response could not be exactly determined: the fishes responded well even below 100 Hz.Hypopomus had its maximum sensitivity around 500 Hz (Fig. 5),Gymnotus around 1,000 Hz (Fig. 6). 4. In all three species the EOD sound response was graded with sound intensity (Hypopomus: Fig. 7). 5. No EOD response to sound was found in two gymnotoids of the wave type,Eigenmannia andApteronotus, and in the gymnotoid pulse fishRhamphichthys. A criterion is proposed by which it should be possible to predict whether or not a weakly electric fish species will show the EOD sound response. 6. It is concluded that the EOD response to sound is similar to EOD responses to other kinds of stimulation (light, touch, vibration, food, and even electrical). The possible biological function is discussed.
    Materialart: Digitale Medien
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  • 2
    Digitale Medien
    Digitale Medien
    Springer
    Naturwissenschaften 63 (1976), S. 48-49 
    ISSN: 1432-1904
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie , Chemie und Pharmazie , Allgemeine Naturwissenschaft
    Materialart: Digitale Medien
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  • 3
    ISSN: 1546-170X
    Quelle: Nature Archives 1869 - 2009
    Thema: Biologie , Medizin
    Notizen: [Auszug] The hypothesis raised by von Bonin et al. is an interesting extension of our previous findings. However, the single previously known hydrogen bond within the efomycine molecule does not exclude the pharmacophore hypothesis, and the use of artificial selectin molecules for in vitro binding studies ...
    Materialart: Digitale Medien
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  • 4
    ISSN: 1573-5133
    Schlagwort(e): Petrocephalus catostoma ; allopatric speciation ; Upper Zambezi ; Limpopo ; Incomati ; Pongola ; Mormyridae
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract East African and south African churchills (Petrocephalus, Mormyridae) were synonymised in 1959 to become members of a single species of subcontinental, southern African distribution, Petrocephalus catostoma (Günther, 1866). By comparison with the type material for P. catostoma from the Ruvuma River and P. stuhlmanni from the Ruvu River, both of East African origin, we confirm the South African form of churchill to represent a new species, P. wesselsi, ranging from the northern Limpopo and Incomati systems south to the Pongola River (Natal) as its southern limit. We also compared churchills from the Sabie River (25° S, South Africa, Incomati system) with churchills from the Upper Zambezi River (17° S, Namibia), using electric organ discharges (EODs) and morphology. The duration of an EOD pulse of the South African form (N = 39; 943.2±S.E. 18.82 µs) is, on average, more than twice that of the Upper Zambezi form (N = 37; 436.6±15.1 µs), and the amplitude of the second head-positive phase (P2 phase relative to P1 = 1) significantly weaker (0.133 ± 0.0005 vs. 0.472 ± 0.002 for Upper Zambezi males, 0.363 ± 0.03 for Upper Zambezi females). In contrast to the Upper Zambezi form, the EOD of the South African form exhibits no difference between the sexes. Fish from the two origins differ significantly in 11 out of 14 anatomical characters studied, confirming molecular genetic differentiation on the species level.
    Materialart: Digitale Medien
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  • 5
    Digitale Medien
    Digitale Medien
    Springer
    Journal of computer aided molecular design 11 (1997), S. 369-384 
    ISSN: 1573-4951
    Schlagwort(e): Molecular docking ; Flexible docking ; Protein–ligand interaction ; Molecular flexibility ; Conformational analysis ; Drug design
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract A possible way of tackling the molecular docking problem arising in computer- aided drug design is the use of the incremental construction method. This method consists of three steps: the selection of a part of a molecule, a so- called base fragment, the placement of the base fragment into the active site of a protein, and the subsequent reconstruction of the complete drug molecule. Assuming that a part of a drug molecule is known, which is specific enough to be a good base fragment, the method is proven to be successful for a large set of docking examples. In addition, it leads to the fastest algorithms for flexible docking published so far. In most real-world applications of docking, large sets of ligands have to be tested for affinity to a given protein. Thus, manual selection of a base fragment is not practical. On the other hand, the selection of a base fragment is critical in that only few selections lead to a low-energy structure. We overcome this limitation by selecting a representative set of base fragments instead of a single one. In this paper, we present a set of rules and algorithms to automate this selection. In addition, we extend the incremental construction method to deal with multiple fragmentations of the drug molecule. Our results show that with multiple automated base selection, the quality of the docking predictions is almost as good as with one manually preselected base fragment. In addition, the set of solutions is more diverse and alternative binding modes with low scores are found. Although the run time of the overall algorithm increases, the method remains fast enough to search through large ligand data sets.
    Materialart: Digitale Medien
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  • 6
    ISSN: 0887-3585
    Schlagwort(e): molecular docking ; flexible docking ; protein-ligand interaction ; molecular flexibility ; conformational analysis ; drug design ; Chemistry ; Biochemistry and Biotechnology
    Quelle: Wiley InterScience Backfile Collection 1832-2000
    Thema: Medizin
    Notizen: We have applied our docking program FLEXX to all eight CASP2 targets involving protein complexes with small ligands. Of the seven targets that were kept in the CASP2 experiment, we could solve two. We found important parts of the solution in four other examples, and were unsuccessful on the remaining example. This paper discusses all predictions in detail. Each of our prediction runs took just a few minutes of computer time on a standard workstation and could thus be demonstrated in real time at the CASP meeting. We believe that this speed is the prime strength of our program FLEXX. In quality, our predictions are competitive with those produced by other predictors. The experiment showed that possible objectives of improvement of the FLEXX program are to incorporate relevant aspects of receptor flexibility, deal with water molecules in the receptor pocket, allow for a postoptimization to refine favorable complexes, and improve the scoring function. Proteins, Suppl. 1:221-225, 1997. © 1998 Wiley-Liss, Inc.
    Zusätzliches Material: 2 Ill.
    Materialart: Digitale Medien
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  • 7
    Digitale Medien
    Digitale Medien
    Springer
    Behavioral ecology and sociobiology 4 (1978), S. 61-74 
    ISSN: 1432-0762
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Summary The electric organ discharge (EOD) signalling of isolated and of socially interacting Pollimyrus isidori was analyzed. 1. EOD interval histograms of resting animals showed wide ranges with three modes of 12 to 15 ms, of around 92 ms, and of 220 to 230 ms (Fig. 4a). In number and/or position of modes, the P. isidori histograms were clearly different from those shown by four other mormyrid species: Gnathonemus petersii, Mormyrus rume, Brienomyrus niger, Brienomyrus brachyistius. 2. The EOD interval histograms of swimming P. isidori (Fig. 4a) displayed only one mode of around 50 ms and closely resembled the EOD activity exhibited by G. petersii, B. niger, and B. brachyistius. 3. During overt attack (Figs. 4b, 6, 7a), P. isidori displayed high discharge rates as do G. petersii, B. niger, and M. rume. The EOD time patterns of the displays were clearly distinct from the other species' displays. 4. These data suggest the possibility that mormyrids might recognize conspecifics from their resting- or attack-associated EOD time patterns, not, however, by monitoring EOD swimming activity. During this behavior, species identification would seem possible only by the analysis of spectral cues from the properties of the individual EOD pulses (cf. Fig. 3). Compared with the other species mentioned above, the extremely short EOD of P. isidori contains much more energy in a high frequency band (peak: 10 kHz with energy beyond 30 kHz). 5. Different individuals of P. isidori displayed either a Preferred Latency Response of approx. 12 to 14 ms or a response consisting in avoiding a 10 to 20 ms discharge latency to foreign electrical stimuli (Figs. 8–10). While the avoidance response may be considered a jamming avoidance behaviour, reducing the probability of coincidences with a conspecific's EODs, the Prefered Latency Response in P. isidori would have the opposite effect and ‘jam’ a conspecific's signals when the latter displays high discharge rates occurring during attack behaviour. Whether these alternative types of latency behaviour are sex, age, or rank correlated remains to be investigated.
    Materialart: Digitale Medien
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  • 8
    ISSN: 1432-0762
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Summary 1. Pollimyrus isidori displays two types of electric organ discharge (EOD) phase-locking behaviours with EODs of other individuals, a given individual always displaying the same type. The preferred latency response (PLR) maintains preference of an EOD interval of 10–15 ms with another individual's EODs; the other type is the preferred latency avoidance (PLA) which consists of an avoidance of 10–20 ms intervals with another individual's EODs. We investigated whether these two EOD phase-coupling behaviours are age- or sex-related. 2. A morphological sex characteristic reported in various mormyrid genera was also found to be present in P. isidori. The base line of the anal fin of females is straight or slightly convex, while it is slightly concave in males (Fig. 2). The animals were sexually mature but not ready to spawn. Sex was determined from gonad histology (9 males, 15 females; Fig. 6). 3. No conspicuous sexual dimorphism in EOD wave form was found (Fig. 3). Morphologically recognizable males (n=11) display PLR, while morphologically recognizable females (n=12) show PLA (Fig. 4). In six of the males and four of the females sex was also confirmed histologically. Young fish (n=6) below a critical range of 5.7–6.3 cm body length show random EOD latency distributions to the stimulus pulses (Fig. 4C); the sexes of these fish could not be determined by the morphological criterion. Only when they had grown to body lengths beyond the critical range did each individual display either PLR (n=4) or the PLA (n=2; Fig. 5). The individuals did not change the type of response (followed up to 20 months). The emergence of the sex difference in electrical behaviour proceded considerably the emergence of the morphological sex difference of the anal fin beginning at 7.4 cm body length. 4. For the following reasons, it is suggested that PLR or PLA is not a jamming avoidance device: (1) neither type of EOD latency behaviour effectively reduces the probability of EOD coincidences below what was expected from random occurrence; (2) the probability of EOD coincidences in two independently discharging fish is exceedingly low (1–3 coincidences in 1,000 pairs of pulses) as a result of low repetition rates (10–25 EODs/s) and short EOD duration (50 μs).
    Materialart: Digitale Medien
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  • 9
    Digitale Medien
    Digitale Medien
    Springer
    Behavioral ecology and sociobiology 6 (1979), S. 67-79 
    ISSN: 1432-0762
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Summary 1. Seven isolated G. petersii resting in their daytime hiding-places were stimulated via a dipole model (Fig. 1a) with previously tape-recorded electric organ discharge (EOD) patterns in an attempt to determine whether G. petersii distinguishes two different intraspecific EOD patterns, rest and attack. 2. Rest pattern A was characterized by a broad distribution of EOD intervals, a low mean discharge rate (8 Hz, Fig. 3), and a long period of significantly positive autocorrelation (2 s, Fig. 4a). Accordingly, the spectrum of EOD rate fluctuations showed a low frequency range (0.005 to 0.12 Hz, Fig. 5a). Attack pattern B was a considerably different EOD interval distribution of high mean discharge rate (25 Hz, Fig. 3), showing a short period of significantly positive autocorrelation (0.8 s, Fig. 4b), only. Here, the spectrum of EOD rate fluctuations was at a considerably higher frequency range (0.09 to 0.47 Hz, Fig. 5b). 3. Play-back of attack pattern B elicited significantly more bodily startle responses from the experimental fish (Fig. 6) than did the rest pattern A (Table 1). Also the number of attacks directed at the dipolemodel was significantly greater during stimulation with attack pattern B (Table 2, Fig. 6). 4. The EOD responses of the experimental fish differed in several respects depending on which stimulation pattern was used. The modes of the pulse rate histograms as well as their spans were lower during play-back of rest pattern A than during stimulation with attack pattern B (average 12.3 vs 16.2 Hz, and average 47 vs 56 Hz, respectively; Fig. 11). Shortterm (0.2 s) EOD rate correlations were stronger when the fish were stimulated with rest pattern A than when they were stimulated with attack pattern B (average correlations 0.67 and 0.61, respectively; Figs. 10 and 11). Significant positive correlations were maintained for longer periods of time during rest pattern stimulation than during attack pattern stimulation (average 1.94 and 1.24 s, respectively; Figs. 10 and 11). The spectra of EOD rate fluctuations of the stimulated fish were at lower frequency ranges during rest pattern stimulation than during attack pattern stimulation (average amplitude-spectrum peak frequencies 0.02 and 0.07 Hz, respectively; Figs. 12 and 13). 5. Although maximal cross-correlations from the EOD rates to the stimulus pulse rates were weaker during rest pattern stimulation (average 0.2) than during attack pattern stimulation (average 0.33), significant cross-correlations were maintained for longer periods of time during rest pattern stimulation than during attack pattern stimulation (average 1.78 and 0.92 s, respectively). The lags of maximal cross-correlations were greater during rest pattern stimulation than during attack pattern stimulation (average 2.6 and 0.8 s, respectively; Figs. 14 and 15). 6. The results clearly showed that at least two specific EOD time patterns encode different ‘messages’ in the intraspecific communication system of G. petersii.
    Materialart: Digitale Medien
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  • 10
    Digitale Medien
    Digitale Medien
    Springer
    Behavioral ecology and sociobiology 1 (1976), S. 45-61 
    ISSN: 1432-0762
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Summary 1. Agonistic motor behaviour and concurrent electric signalling were studied in individually held, residential Gnathonemus petersii. Aggressive behaviour was elicited by presenting a specimen of a closely related species, Mormyrus rume, for 3 min a day. 2. The principal agonistic motor patterns are described (Fig. 2). Among them head butt, approach and lateral display were further analysed. 3. The electrical activity displayed during agonistic behaviour was found to differ fundamentally both from isolated resting and swimming conditions. The mean discharge rate recorded during aggressive behaviour (31 Hz, Fig. 3 c) is approximately twice the rate observed in an isolated swimming fish (Fig. 3b) and three times the rate displayed by a resting animal (Fig. 3a). An attacking G. petersii exhibits a much greater range of electric organ discharge (EOD) intervals than isolated swimming or resting individuals. EOD-interval histograms recorded from attacking fish show two sharp modes at high discharge rate; there are no intermediate intervals. 4. During the course of an attack, the initially low and variable discharge rate increases fairly linearly as the distance from the attacked fish diminishes (Fig. 9). The EOD rate associated with physical contact (head butt) comprises between 60 and 80 Hz in 24 of 28 attacks analysed; the dominant mode of the distribution is 61 Hz (Fig. 8). 5. During subsequent lateral display, G. petersii emits a high discharge rate pattern consisting of two types of “steady-state” activities which may last up to a few seconds: the first is a fairly regular alternation of approx. 16 and 8 ms intervals (paired pulses); this pattern gives rise to the two peaks of high discharge rate in the interval histogram (Fig. 3c). The second is a regular sequence of either 16 or 8 ms intervals (Fig. 4A). The only female among the animals used in our study showed the same display but did not exhibit the highest possible discharge rate (i.e. a regular sequence or 8 ms intervals; Fig. 4B). The high discharge rate is terminated by a sudden discharge break (Figs. 4A and 6). 6. It is suggested that the attack-associated EOD rate increase is a remnant of an ordinary locomotory pattern which has changed its function to a ritualised aggressive signal that occurs in a socially significant and well-defined context. The high discharge rate might serve three functions: (i) behavioural isolation of closely related, sympatrically living mormyrids (perhaps by character displacement); (ii) recognition of sexes; (iii)_synchronisation of mates during courtship.
    Materialart: Digitale Medien
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