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  • 1
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 113 (1991), S. 769-778 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 98 (1994), S. 12506-12515 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 105 (1996), S. 10838-10848 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A method to scrutinize "regularity'' of barrier recrossing dynamics of chemical reactions in the vicinity of the transition state is developed by using Lie canonical perturbation theory (LCPT). As an example, the recrossing dynamics of a four-degrees of freedom Hamiltonian regarded as a model of proton transfer reaction of malonaldehyde is investigated. It is shown that the second order LCPT is essential to describe frequent saddle recrossings whose total number of crossings is greater than three, and reproduces the time-dependent transmission coefficient. It is found that the local recrossing dynamics can be regarded as quasiperiodic and a well-defined reaction coordinate along which no barrier recrossings occur, can be extracted in the phase space by using the second order LCPT Hamiltonian. We also formulate a new transition state theory which allows us to estimate the reaction rate constant taking account of the barrier recrossing effect if the recrossings are near-integrable in the short time but long enough to determine the final state of the recrossing dynamics. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 105 (1996), S. 5431-5445 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: On the assumption of external bath equilibrium, a set of simultaneous linear generalized Langevin equations (GLE) for a microscopic Hamiltonian is derived, whose potential function includes cubic (i.e., nonlinear) coupling terms, which are linear in internal coordinates but quadratic in external bath coordinates. Furthermore, on the linear GLE treatment, a closed expression of time-dependent friction coefficient and a rate constant in the Grote–Hynes theory (GHT) are derived microscopically, reflecting the reactant and solvent structures. By comparing the rate constant of GHT with that of the multidimensional transition-state theory (TST) for the whole solution system, we conclude that these rate expressions are different from each other and the deviation is due to the dynamic effect via the nonlinear coupling among the reaction, internal, and external normal coordinates. Moreover, the friction coefficient depends on temperature and the deviation becomes larger with temperature increasing. By the second-order perturbation theory, we have estimated the deviation which is approximately equal to a transmission coefficient κ, for a real cluster reaction system: the formic acid–water–water system. We have obtained κ of 0.92, which is smaller than unity. A mode analysis shows that two hindered translational motions of the solvent with low frequencies prevent the reaction from proceeding. Besides, we have investigated the isotope effect of a medium water molecule and found that the dynamic isotope effect for the reaction is quite large, i.e., κ for heavy water is much smaller than that for light water. Not the change of the reactive frequency on the free energy surface but that of the frictional effect in the deuterium substitution mainly contributes to the isotope effect. Further, the temperature dependence of κ for the reaction has been estimated and it is found that κ becomes smaller with temperature increasing and the change of the frictional effect in temperature contributes to the temperature dependence of κ more largely than that of the reactive frequency on the free energy surface. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 97 (1992), S. 8143-8155 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: An extension of transition-state theory for liquid-phase chemical reactions is presented. The effect of adding a second solvent water molecule on the proton-transfer reaction in a formamidine–water (FW) cluster was studied. Ab initio molecular-orbital calculations were performed for the formamidine–water–water (FWW) system to obtain the adiabatic potential-energy surface. It was expressed in two coordinate systems: (i) the total normal-coordinate system of the FWW system, and (ii) the composite normal-coordinate system consisting of two normal-coordinate systems of the isolated FW system and the isolated medium-water molecule. In either of these two systems, the solvent effect can be categorized as either (i) an equilibrium solvation effect or (ii) a frictional effect. In this article, the former effect was investigated in detail and, in the total normal-coordinate system, a frequency diagram was obtained by diagonalizing the Hessian matrix at successive geometries along intrinsic reaction coordinate and then, within the Rice–Ramsperger–Kassel–Marcus (RRkM) formalism, the rate constant was evaluated with the vibrational frequencies assigned in this manner. In the composite normal-coordinate system, the off-diagonal elements found in the Hessian matrix are due to the interaction between the FW system and the medium-water molecule at equilibrium separation. The rate constant was evaluated within the diagonal approximation. As a result, both treatments work well and yield similar conclusions about the role of the solvent to those drawn from chemical-reaction molecular-dynamics simulations. The reaction is found to be enhanced considerably by the assistance of an additional medium-water molecule. The second treatment is concluded to be reasonably applicable in the estimation of reaction rates for liquid-phase chemical reactions.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 93 (1989), S. 220-225 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 84 (1986), S. 2247-2253 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A theory for van der Waals molecules (AB---C) is presented, which is based on the concept that a van der Waals molecule can be considered as a nonrigid molecule because it is loosely bound in comparison with proper chemical bonds. A perturbation method is performed for the three-body internal Hamiltonian which has been obtained for the case in which the angular momentum of the whole molecular system is equal to zero (J=0). A new idea, the dynamic perturbation mechanism of vibrational energy transfer, is presented which originates in the coupling of the kinetic energy of the chemical and van der Waals bonds. This is applied to the vibrational predissociation process of the van der Waals molecule and linewidths and lifetimes are calculated by estimating the dynamic coupling. The decay rates calculated by this new mechanism are quite large and are comparable to those values estimated by the usual treatment of the perturbation potential.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 29 (1986), S. 1457-1462 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The appearance of the maximum linewidth by the vibrational predissociation of I2He van der Waals (vdW) molecule as a function of the initial vibrational quantum number of I2 is predicted by the dynamic perturbation theory. The kinetic energy perturbation is introduced in addition to perturbation potential. The linewidth agrees quite well with experiment.
    Additional Material: 1 Ill.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 23 (1983), S. 1101-1109 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The localization characteristics of the electronic wave functions in a finite one-dimensional chain with the diagonal or the off-diagonal disorder of the potentials have been studied. It has been shown that the eigenfuction at the frontier level is relatively “strong” against the temptation to localize caused by the existence of the random potentials. It has also been pointed out that the spatial behavior of the total density reflects that of the diagonal random potentials, but that under the off-diagonal random potentials the total density is spatially uniform (completely extended).
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
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  • 10
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A microscopic formulation of solution chemical reactions, taking reactants and medium structures into consideration, is presented on the basis of microscopic understandings obtained by recent quantum chemical methods (i.e., ab initio molecular orbital theory, etc.). Assuming thermal equilibrium of the medium bath, an effective internal Hamiltonian is derived, and, further, its derivative with respect to internal normal coordinates is proved explicitly to give the same force field as is provided by the free-energy surface or potential of mean force. The free-energy surface can be expressed in the composite normal coordinate system (CNCS) consisting of some normal coordinate systems of isolated reactants and surrounding solvent molecules (i.e., medium solvent molecules). In CNCS, in use of diagonal elements obtained in the Hessian matrix of the free-energy surface, effective normal-mode frequencies, which reflect the equilibrium solvent effect, are estimated. Furthermore, on the generalized Langevin equation (GLE) treatment, a closed expression of the time-dependent frictional coefficient is derived on a microscopic basis, reflecting the reactant and solvent structures. The nonequilibrium effect is estimated by an analytical expression similar to that in the Grote-Hynes theory. The rate constant is evaluated for a typical model system and it is shown that the equilibrium rate constants should be reduced by a factor 0.997. Finally, it is concluded that the present microscopic theory is reasonably applicable to the estimation of chemical reaction rate constants in solution. © 1994 John Wiley & Sons, Inc.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
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