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  • 1
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 29 (1986), S. 1177-1180 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The preferred conformations of the thyrotropin-releasing hormone (TRH) have been calculated by the global optimization method proposed earlier by us. [G. Subba Rao, R. S. Tyagi, and R. K. Mishra, J. Theor. Biol. 90, 377 (1981)]. The potential function used comprises the electrostatic, nonbonded, torsional and hydrogen-bonding terms. The results are in good agreement with the crystal structures of TRH. No intramolecular hydrogen bonding is found to occur.
    Additional Material: 1 Ill.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 273-279 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformational energy of acetylcholine is minimized with respect to the distances between nonbonded atoms with the help of the Bremermann method of unconstrained global optimization. The set of distances for which the energy is the absolute minimum is then used to calculate the coordinates of all the atoms and hence the conformation of the molecule. The simplest type of potential function, namely the classical potential function is chosen for the calculation. The major advantages of this method are (i) that the starting point need not be close to the actual solution, (ii) that it gives the global minimum, irrespective of the starting point, (iii) that it is very general and can be used for any type of potential function, and (iv) that it does not require the computation of gradients. The results obtained are in very good agreement with those of other workers.
    Additional Material: 1 Ill.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 34 (1988), S. 95-101 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Residues 23-26 (Gly-, Phe-, Phe-, Tyr) of the B-chain of insulin constitute a critical area of the receptor-binding region of the molecule. Three chemically distinct mutant insulins have recently been identified in patients with NIDDM, each involving substitution of either B24 of B25 phenylalanine. Two of the mutations have been unambiguously characterized: a B25 phenylalanine-to-leucine substitution [B25(Phe → Leu)], and the other, a B24 phenylalanine-to-serine [B24 (Phe → Ser)]. We have calculated the preferred conformations of normal and mutant insulins using a global optimization method developed by us earlier. The mutant insulins exhibit significant alterations in conformation and in the average distances between amino acid side-chains as compared to normal insulin. Therefore, the decreased binding affinity of mutant insulin could be either due to an alteration in the nature of the substituted residue (hydrophilic in place of hydrophobic) or to the alteration in one or more critical side-chain distances in the case of a hydrophobic to hydrophobic substitution.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
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