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  • 1
    Digitale Medien
    Digitale Medien
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 65 (1989), S. 0 
    ISSN: 1574-6968
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: Abstract Partial reverse transcriptase sequencing of 16S rRNA from Mobiluncus curtisii and M. mulieris clearly indicate that the genus Mobiluncus is not a member of the Bacteroidaceae but belongs to the order Actinomycetales. The highest degree of relationship is found with the genus Actinomyces which is supported by the presence of common physiological properties.
    Materialart: Digitale Medien
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  • 2
    Digitale Medien
    Digitale Medien
    Springer
    Journal of molecular evolution 21 (1985), S. 305-316 
    ISSN: 1432-1432
    Schlagwort(e): Bacterial evolution ; Mycoplasma ; 16S rRNA ; Phylogeny ; Tachytely
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Summary In phenotype the mycoplasmas are very different from ordinary bacteria. However, genotypically (i.e., phylogenetically) they are not. On the basis of ribosomal RNA homologies the mycoplasmas belong with the clostridia, and indeed havespecific clostridial relatives. Mycoplasmas are, however, unlike almost all other bacteria in the evolutionary characteristics of their ribosomal RNAs. These RNAs contain relatively few of the highly conserved oligonucleotide sequences characteristic of normal eubacterial ribosomal RNAs. This is interpreted to be a reflection of an elevated mutation rate in mycoplasma lines of descent. A general consequence of this would be that the variation associated with a mycoplasma population is augmented both in number and kind, which in turn would lead to an unusual evolutionary course, one unique in all respects. Mycoplasmas, then, are actually tachytelic bacteria. The unusual evolutionary characteristics of their ribosomal RNAs are the imprints of their rapid evolution.
    Materialart: Digitale Medien
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  • 3
    ISSN: 1432-072X
    Schlagwort(e): Archaebacteria ; Methanogens ; Methanocorpusculum parvum ; Taxonomy ; 16 S rRNA ; Serological probes ; Physiology ; Tungsten ; Cofactors ; Cytochrome
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract A new mesophilic, monotrichously flagellated methane-producing coccus of ≦1μm in diameter was isolated from an anaerobic sour whey digester, originally inoculated with sewage sludge. Growth and methane production were observed with H2/CO2, formate and — less effectively — with 2-propanol/CO2. The isolate grew at temperatures between 15° C and 45° C with the optimum at around 37° C. Acetate, yeast extract and tungstate were required in the medium. Clarified rumen fluid stimulated growth. The DNA of the new methanogen has a G+C content of 48.5 mol%. Comparative 16 S rRNA oligonucleotide cataloguing allows to define the new isolate as a member of a new genus of the order Methanomicrobiales. Further evidence for this is provided by the antigenic crossreactivity with anti-S probes and by metabolic features. Because of its small size the new methanogen is named Methanocorpusculum parvum.
    Materialart: Digitale Medien
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  • 4
    ISSN: 1432-072X
    Schlagwort(e): Archaebacteria ; Methanocorpusculaceae ; Methanocorpusculum sinense spec. nov., Methanocorpusculum bavaricum spec. nov. ; Methanocorpusculum parvum ; 16 S rRNA ; Secondary alcohols ; Lipids ; Polyamines ; S-layer ; Glycoproteins ; Physiology
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract Two new methanogenic bacteria, Methanocorpusculum sinense spec. nov. strain DSM 4274 from a pilot plant for treatment of distillery wastewater in Chengdu (Province Sichuan, China), and Methanocorpusculum bavaricum spec. nov. strain DSM 4179, from a wastewater pond of the sugar factory in Regensburg (Bavaria, FRG) are described. Methanocorpusculum strains are weakly motile and form irregularly coccoid cells, about 1 μm in diameter. The cell envelope consists of a cytoplasmic membrane and a S-layer, composed of hexagonally arranged glycoprotein subunits with molecular weights of 90000 (Methanocorpusculum parvum), 92000 (M. sinense), and 94000 (M. bavaricum). The center-to-center spacings are 14.3 nm, 15.8 nm and 16.0 nm, respectively. Optimal growth of strains is obtained in the mesophilic temperature range and at a pH around 7. Methane is produced from H2/CO2, formate, 2-propanol/CO2 and 2-butanol/CO2 by M. parvum and M. bavaricum, whereas M. sinense can only utilize H2/CO2 and formate. Growth of M. sinense and M. bavaricum is dependent on the presence of clarified rumen fluid. The G+C content of the DNA of the three strains is ranging from 47.7–53.6 mol% as determined by different methods. A similar, but distinct polar lipid pattern indicates a close relationship between the three Methanocorpusculum species. The polyamine patterns of M. parvum, M. sinense and M. bavaricum are similar, but distinct from those of other methanogens and are characterized by a high concentration of the otherwise rare 1,3-diaminopropane. Quantitative comparison of the antigenic fingerprint of members of Methanocorpusculum revealed no antigenic relationship with any one of the reference methanogens tested. On the basis of the distant phylogenetic position of M. parvum and the data presented in this paper a new family, the Methanocorpusculaceae fam. nov., is defined.
    Materialart: Digitale Medien
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  • 5
    ISSN: 1432-072X
    Schlagwort(e): Evolution ; Nif genes ; Nitrogen fixation ; Nitrogenase ; Nucleotide sequence ; Phylogeny ; Rhizobium ; 16S rRNA cataloguing
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract It was known that nitrogenase genes and proteins are well conserved even though they are present in a large variety of phylogenetically diverse nitrogen fixing bacteria. This has lead to the speculation, among others, that nitrogen fixation (nif) genes were spread by lateral gene transfer relatively late in evolution. Here we report an attempt to test this hypothesis. We had previously established the complete nucleotide sequences of the three nitrogenase genes from Bradyrhizobium japonicum, and have now analyzed their homologies (or the amino acid sequence homologies of their gene products) with corresponding genes (and proteins) from other nitrogen fixing bacteria. There was a considerable sequence conservation which certainly reflects the strict structural requirements of the nitrogenase iron-sulfur proteins for catalytic functioning. Despite this, the sequences were divergent enough to classify them into an evolutionary scheme that was conceptually not different from the phylogenetic positions, based on 16S rRNA homology, of the species or genera harboring these genes. Only the relation of nif genes of slow-growing rhizobia (to which B. japonicum belongs) and fast-growing rhizobia was unexpectedly distant. We have, therefore, performed oligonucleotide cataloguing of their 16S rRNA, and found that there was indeed only a similarity of S AB=0.53 between fast- and slowgrowing rhizobia. In conclusion, the results suggest that nif genes may have evolved to a large degree in a similar fashion as the bacteria which carry them. This interpretation would speak against the idea of a recent lateral distribution of nif genes among microorganisms.
    Materialart: Digitale Medien
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  • 6
    ISSN: 1432-072X
    Schlagwort(e): Gemmobacter gen. nov. ; Gemmobacter aquatilis sp. nov. ; Blastobacter ; Blastobacter aggregatus ; Phylogeny ; Taxonomy ; 16S rRNA cataloguing ; Fatty acids ; Plasmids
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract Blastobacter aggregatus and a Blastobacter-like isolate (IFAM 1031) were analysed by the 16S ribosomal RNA cataloguing approach in order to determine their phylogenetic position. Both phenotypical similar organisms are members of the alpha-subdivision of purple phototrophic bacteria and their non-phototrophic relatives but they are not closely related: B. aggregatus clusters with Agrobacterium tumefaciens and Rhizobium species; the unnamed strain displays a moderate relationship to members of Rhodobacter and Paracoccus denitrificans, with which is shares the character of a nicked 23S rRNA. Although the budding isolate IFAM 1031 resembles members of Blastobacter phenotypically, in the broad DNA G+C content and in the fatty acid pattern, a unique set of characters was found which allows description of the isolate as the typus of a new genus for which Gemmobacter gen. nov. is proposed, with G. aquatilis sp. nov. as the type species. G. aquatilis harbors at least two plasmids of different size and unknown function.
    Materialart: Digitale Medien
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  • 7
    Digitale Medien
    Digitale Medien
    Springer
    Archives of microbiology 150 (1988), S. 244-248 
    ISSN: 1432-072X
    Schlagwort(e): Origin of plastids ; Endosymbiosis ; Chrysophytes (Ochromonas danica) ; Heliobacterium chlorum ; 16S rRNA oligonucleotide cataloguing ; Reverse transcriptase sequencing ; Phylogenetic relations (Molecular phylogeny) ; Chloroplast evolution
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract The phylogenetic position of the golden-yellow alga Ochromonas danica chrysoplast was investigated by comparison of the 16S rRNA catalogue and two long 16S rRNA stretches (804 and 454 bases) with catalogues from eubacteria and chloroplasts and with homologoes 16S rRNA regions from Escherichia coli, Bacillus subtilis, Heliobacterium chlorum, Anacystis nidulans and chloroplasts from Zea mays, Nicotiana tabacum, Euglena gracilis and Chlamydomonas reinhardii, respectively. Both approaches indicate a closer relationship of the chrysoplast to chloroplasts and cyanobacteria than to the brownish photoheterotrophic Heliobacterium chlorum for which a common ancestry has recently been hypothesized.
    Materialart: Digitale Medien
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  • 8
    Digitale Medien
    Digitale Medien
    Springer
    Plant and soil 118 (1989), S. 211-219 
    ISSN: 1573-5036
    Schlagwort(e): filter hybridization ; Frankia ; in-situ hybridization ; oligonucleotide probes ; rRNA sequences
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft
    Notizen: Abstract Reverse transcriptase sequence analyses of variable regions of 16S rRNA of the nitrogen-fixing (Nif+)Frankia strain Ag45/Mut 15 and the Nif− strains AgB1.9 and AgW1.1 showed large differences in two of three variable regions between bothFrankia groups. Synthetic oligonucleotides complementary to sequences in one of these different regions were used in hybridization experiments against isolated rRNA of severalFrankia strains belonging to three compatibility groups. Ribosomal RNA of eleven effectiveFrankia strains obtained from differentAlnus species strongly hybridized with the probe against the effective strain Ag45/Mut 15 (probe EFP), whereas ineffective strains and effective strains obtained from other hosts (Elaeagnus, Comptonia, Coriaria, Hippophaë, Colletia spp.) did not hybridize. Strong hybridization was also obtained with the effectiveCasuarina strain CcI3. In the group of effective alder strains one strain showed weaker hybridization indicating small sequence differences. Different sequences were also found after hybridization with the probe against the ineffectiveFrankia strains AgB1.9 and AgW1.1 (probe IFP). Only these two strains showed hybridization. The same results were obtained byin-situ hybridizations with probe EFP, whereas hybridization with probe IFP showed crossreaction with several other strains. Tests of these probes against rRNA of several microorganisms indicate a high specificity.
    Materialart: Digitale Medien
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