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  • 1
    ISSN: 1432-072X
    Keywords: Archaea ; Methanogens ; Sulfate reducers ; Tetrahydromethanopterin ; Methanofuran ; Coenzyme F420 ; C1-Enzymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The sulfate-reducing Archaeoglobus fulgidus contains a number of enzymes previously thought to be unique for methanogenic Archaea. The purification and properties of two of these enzymes, of formylmethanofuran: tetrahydromethanopterin formyltransferase and of N 5,N 10-methylenetetrahydromethanopterin dehydrogenase (coenzyme F420 dependent) are described here. A comparison of the N-terminal amino acid sequences and of other molecular properties with those of the respective enzymes from three methanogenic Archaea revealed a high degree of similarity.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 169 (1998), S. 201-205 
    ISSN: 1432-072X
    Keywords: Key words Methanogenic archaea ; Methanosarcina barkeri ; Hydrogenases ; Coenzyme F420 ; Gene ; expression
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract F420-reducing hydrogenases are nickel iron-sulfur flavoproteins involved in CO2 reduction with H2 to methane in methanogenic archaea. Evidence is presented that Methanosarcina barkeri contains two isoenzymes for which the encoding genes have been cloned and sequenced. The genes are organized in two operons, frhADGB and freAEGB, each comprising four open reading frames. Transcription analysis revealed that both operons are transcribed during growth of Ms. barkeri on H2/CO2, on methanol, and on trimethylamine, but not during growth on acetate.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1432-072X
    Keywords: Key words Methanofuran ; Tetrahydromethanopterin ; Coenzyme F420 ; Corrinoids ; Cytochromes ; Autotrophic ; CO2 fixation ; Dissimilatory sulfate reduction ; Archaeoglobus species ; Methanogenic Archaea
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Archaeoglobus lithotrophicus is a hyperthermophilic Archaeon that grows on H2 and sulfate as energy sources and CO2 as sole carbon source. The autotrophic sulfate reducer was shown to contain all the enzyme activities and coenzymes of the reductive carbon monoxide dehydrogenase pathway for autotrophic CO2 fixation as operative in methanogenic Archaea. With the exception of carbon monoxide dehydrogenase these enzymes and coenzymes were also found in A. profundus. This organism grows lithotrophically on H2 and sulfate, but differs from A. lithotrophicus in that it cannot grow autotrophically: A. profundus requires acetate and CO2 for biosynthesis. The absence of carbon monoxide dehydrogenase in A. profundus is substantiated by the observation that this organism, in contrast to A. lithotrophicus, is not mini-methanogenic and contains only relatively low co ncentrations of corrinoids.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1432-072X
    Keywords: ATP-citrate lyase ; Citric acid cycle ; Acetate oxidation ; ATP synthesis via substrate level phosphorylation ; Sulfate-reducing bacteria ; Desulfobacter postgatei
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Desulfobacter postgatei is an acetate-oxidizing, sulfate-reducing bacterium that metabolizes acetate via the citric acid cycle. The organism has been reported to contain a si-citrate synthase (EC 4.1.3.7) which is activated by AMP and inorganic phosphate. It is show now, that the enzyme mediating citrate formation is an ATP-citrate lyase (EC 4.1.3.8) rather than a citrate synthase. Cell extracts (160,000xg supernatant) catalyzed the conversion of oxaloacetate (apparent K m=0.2 mM), acetyl-CoA (app. K m=0.1 mM), ADP (app. K m=0.06 mM) and phosphate (app. K m=0.7 mM) to citrate, CoA and ATP with a specific activity of 0.3 μmol·min-1·mg-1 protein. Per mol citrate formed 1 mol of ATP was generated. Cleavage of citrate (app. K m=0.05 mM; V max=1.2 μmol · min-1 · mg-1 protein) was dependent on ATP (app. K m=0.4 mM) and CoA (app. K m=0.05 mM) and yielded oxaloacetate, acetyl-CoA, ADP, and phosphate as products in a stoichiometry of citrate:CoA:oxaloacetate:ADP=1:1:1:1. The use of an ATP-citrate lyase in the citric acid cycle enables D. postgatei to couple the oxidation of acetate to 2 CO2 with the net synthesis of ATP via substrate level phosphorylation.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 154 (1990), S. 274-279 
    ISSN: 1432-072X
    Keywords: Desulfurella ; Desulfuromonas ; Sulfur reduction ; Acetate oxidation ; Citric acid cycle ; Menaquinone ; Cytochromes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Desulfurella acetivorans and Desulfuromonas acetoxidans are both acetate oxidizing sulfur reducing eubacteria. The two organisms differ in G+C content of DNA (31.4% versus 50–52%) and in growth temperature optimum (55°C versus 30°C) and in that D. acetivorans does not contain cytochromes. Both organisms are shown to be similar in that they metabolize acetate via the citric acid cycle rather than via the carbon monoxide dehydrogenase pathway. They were found to differ, however, in the mechanism of acetate activation and of succinate formation. In D. acetoxidans acetyl-CoA and succinate are formed from acetate and succinyl-CoA involving only one enzyme, succinyl-CoA: acetate CoA-transferase. In D. acetivorans acetyl-CoA is generated from acetate via acetyl phosphate involving acetate kinase and phosphate acetyltransferase; succinate is formed from succinyl-CoA via succinyl-CoA synthetase. Both sulfur reducers were found to contain menaquinone.
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 1432-072X
    Keywords: Methanosarcina barkeri ; Methanogenesis ; Tetrahydromethanopterin ; Coenzyme F420 ; Affinity chromatography ; Blue Sepharose CL-6B
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The dehydrogenation of N 5,N 10-methylenetetrahydromethanopterin (CH2=H4MPT) to N 5,N 10-methenyltetrahydromethanopterin (CH≡H4MPT+) is an intermediate step in the oxidation of methanol to CO2 in Methanosarcina barkeri. The reaction is catalyzed by CH2=H4MPT dehydrogenase, which was found to be specific for coenzyme F420 as electron acceptor; neither NAD, NADP nor viologen dyes could substitute for the 5-deazaflavin. The dehydrogenase was anaerobically purified almost 90-fold to apparent homogeneity in a 32% yield by anion exchange chromatography on DEAE Sepharose and Mono Q HR, and by affinity chromatography on Blue Sepharose. Sodium dodecyl sulfate/polyacrylamide gel electrophoresis revealed only one protein band with an apparent mass of 31 kDa. The apparent molecular mass of the native enzyme determined by polyacrylamide gradient gel electrophoresis was 240 kDa. The ultraviolet/visible spectrum of the purified enzyme was almost identical to that of albumin suggesting the absence of a chromophoric prosthetic group. Reciprocal plots of the enzyme activity versus the substrate concentrations were linear: the apparent K m for CH2=H4MPT and for coenzyme F420 were found to be 6 μM and 25 μM, respectively. Vmax was 4,000 μmol min-1·mg-1 protein (kcat=2,066 s-1) at pH 6 (the pH optimum) and 37°C. The Arrhenius activation energy was 40 kJ/mol. The N-terminal amino acid sequence was found to be 50% identical with that of the F420-dependent CH2=H4MPT dehydrogenase isolated from H2/CO2 grown Methanobacterium thermoautotrophicum.
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1432-072X
    Keywords: Methanogenic bacteria ; Methanopyrus ; Hyperthermophiles ; Thermostability ; Tetrahydromethanopterin ; Coenzyme F420
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Methanopyrus kandleri belongs to a novel group of abyssal methanogenic archaebacteria that can grow at 110°C on H2 and CO2 and that shows no close phylogenetic relationship to any methanogens known so far. N 5 N 10 -Methylenetetrahydromethanopterin reductase, an enzyme involved in methanogenesis from CO2, was purified from this hyperthermophile. The apparent molecular mass of the native enzyme was found to be 300 kDa. Sodium dodecylsulfate/polyacrylamide gel electrophoresis revealed the presence of only one polypeptide of apparent molecular mass 38 kDa. The ultraviolet/visible spectrum of the enzyme was almost identical to that of albumin indicating the absence of a chromophoric prosthetic group. The reductase was specific for reduced coenzyme F420 as electron donor; NADH, NADPH or reduced dyes could not substitute for the 5-deazaflavin. The catalytic mechanism was found to be of the ternary complex type as deduced from initial velocity plots. V max at 65°C and pH 6.8 was 435 U/mg (kcat=275 s-1) and the K m for methylenetetrahydro-methanopterin and for reduced F420 were 6 μM and 4 μM, respectively. From Arrhenius plots an activation energy of 34 kJ/mol was determined. The Q 10 between 40°C and 90°C was 1.5. The reductase activity was found to be stimulated over 100-fold by sulfate and by phosphate. Maximal stimulation (100-fold) was observed at a sulfate concentration of 2.2 M and at a phosphate concentration of 2.5 M. Sodium-, potassium-, and ammonium salts of these anions were equally effective. Chloride, however, could not substitute for sulfate or phosphate in stimulating the enzyme activity. The thermostability of the reductase was found to be very low in the absence of salts. In their presence, however, the reductase was highly thermostable. Salt concentrations between 0.1 M and 1.5 M were required for maximal stability. Potassium salts proved more effective than ammonium salts, and the latter more effective than sodium salts in stabilizing the enzyme activity. The anion was of less importance. The N-terminal amino acid sequence of the reductase from M. kandleri was determined and compared with that of the enzyme from Methanobacterium thermoautotrophicum and Methanosarcina barkeri. Significant similarity was found.
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  • 8
    ISSN: 1432-072X
    Keywords: Key words Hydrogenases ; Coenzyme F420 ; N5 ;  N10-Methylenetetrahydromethanopterin ; Methanobacterium thermoautotrophicum ; Nickel-limited chemostat culture
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary In most methanogenic archaea, two hydrogenase systems that can catalyze the reduction of coenzyme F420 (F420) with H2 are present: (1) the F420-reducing hydrogenase, which is a nickel iron-sulfur flavoprotein composed of three different subunits, and (2) the N 5, N10-methylenetetrahydromethanopterin dehydrogenase system, which is composed of H2-forming methylenetetrahydromethanopterin dehydrogenase and F420-dependent methylenetetrahydromethanopterin dehydrogenase, both metal-free proteins without an apparent prosthetic group. We report here that in nickel-limited chemostat cultures of Methanobacterium thermoautotrophicum, the specific activity of the F420-reducing Ni/Fe-hydrogenase was essentially zero, whereas that of the H2-forming methylenetetrahydromethanopterin dehydrogenase was six times higher, and that of the F420-dependent methylenetetrahydromethanopterin dehydrogenase was four times higher than in cells grown under non-nickel-limited conditions. This evidence supports the hypothesis that when M. thermoautotrophicum grows under conditions of nickel limitation, the reduction of F420 with H2 is catalyzed by the metal-free methylenetetrahydromethanopterin dehydrogenase system.
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  • 9
    ISSN: 1432-072X
    Keywords: Thermophiles ; Methanopyrus ; Methanogenic bacteria ; Archaebacteria ; Pterins ; Tetrahy-dromethanopterin ; Methylenetetrahydromethanopterin ; Coenzyme F420 ; Hydrogenase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Methanopyrus kandleri is a novel abyssal methanogenic archaebacterium growing at 110°C on H2 and CO2. The N5, N10-methylenetetrahydromethanopterin dehydrogenase, an enzyme involved in methanogenesis from CO2 and H2, was purified from this hyperthermophile and characterized. The dehydrogenase was found to be composed of only one polypeptide of apparent molecular mass 44 kDa. The UV/Vis spectrum was similar to that of albumin. The protein catalyzed the reversible dehydrogenation of N5, N10-methylenetetra-hydromethanopterin (CH2=H4MPT) to N5, N10-methenyltetrahydromethanopterin (CH = H4MPT4) and molecular hydrogen: CH = H4MPT4 + H2. The rate of CH2=H4MPT dehydrogenation (apparent Vmax) at 65°C and pH5.8 was 1500 U/mg, the apparent Km for CH2=H4MPT was 50 μM, the Arrhenius activation energy was 52 kJ/mol, and the Q10 between 30°C and 70°C was 2.-. The specific activity increased hyperbolically with the proton concentration between pH 7 and pH 4.5. The purified dehydrogenase did not catalyze the reduction of viologen dyes, of coenzyme F420, and of pyridine nucleotides with either CH2=H4MPT or H2. For activity the CH2=H4MPT dehydrogenase required the presence of salts. Fifty percent of maximal activity was reached at salt concentrations of 100 mM, potassium phosphate, potassium chloride, and sodium chloride being almost equally effective in stimulating the enzyme activity. Cell extracts of M. kandleri did not loose CH2=H4MPT dehydrogenase activity when incubated at 90°C for 60 min. The purified enzyme, however, proved very themolabile. The N-terminal amino acid sequence of the dehydrogenase was determined and compared with that of the CH2=H4MPT dehydrogenase (H2-forming) from Methanobacterium thermoautotrophicum. Significant similarity was found.
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  • 10
    ISSN: 1432-072X
    Keywords: methanogenic archaebacteria ; Methanopyrus ; Hyperthermophiles ; Methyl-coenzyme M reductase ; Coenzyme F430 ; Coenzyme F420 ; Methanofuran ; Tetrahydromethanopterin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Methanopyrus kandleri belongs to a novel group of abyssal methanogenic archaebacteria that can grow at 110°C on H2 and CO2 and that shows no close phylogenetic relationship to any methanogen known so far. Methyl-coenzyme M reductase, the enzyme catalyzing the methane forming step in the energy metabolism of methanogens, was purified from this hyperthermophile. The yellow protein with an absorption maximum at 425 nm was found to be similar to the methyl-coenzyme M reductase from other methanogenic bacteria in that it was composed each of two α-, β- and γ-subunits and that it contained the nickel porphinoid coenzyme F430 as prosthetic group. The purified reductase was inactive. The N-terminal amino acid sequence of the γ-subunit was determined. A comparison with the N-terminal sequences of the γ-subunit of methyl-coenzyme M reductases from other methanogenic bacteria revealed a high degree of similarity. Besides methyl-coenzyme M reductase cell extracts of M. kandleri were shown to contain the following enzyme activities involved in methanogenesis from CO2 (apparent Vmax at 65°C): formylmethanofuran dehydrogenase, 0.3 U/mg protein; formyl-methanofuran: tetrahydromethanopterin formyltransferase, 13 U/mg; N 5,N10-methenyltetrahydromethanopterin cyclohydrolase, 14 U/mg; N 5,N10-methylenetetrahydromethanopterin dehydrogenase (H2-forming), 33 U/mg; N 5,N10-methylenetetrahydromethanopterin reductase (coenzyme F420 dependent), 4 U/mg; heterodisulfide reductase, 2 U/mg; coenzyme F420-reducing hydrogenase, 0.01 U/mg; and methylviologen-reducing hydrogenase, 2.5 U/mg. Apparent Km values for these enzymes and the effect of salts on their activities were determined. The coenzyme F420 present in M. kandleri was identified as coenzyme F420-2 with 2 γ-glutamyl residues.
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