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  • 1995-1999  (1,144)
  • 1996  (1,144)
  • Engineering General  (686)
  • Cell & Developmental Biology  (458)
  • Nuclear reactions
  • 1
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 461-468 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The mitogenic effect of recombinant human erythropoietin (rHuEpo) on primary cultures of neonatal rat cardiac myocytes was observed. rHuEpo triggered a dose-dependent increase in myocyte proliferation. The hormone effect over optimally grown control culture 1 day after addition was maximum with 0.5 U/ml and was inhibited with anti-rHuEpo. Inhibitors of enzymatic pathways known to be involved in the cytokines intracellular mechanism such as genistein (tyrosine kinase inhibitor), 2-nitro-4-carboxiphenyl-N,N-diphenylcarbamate (phospholipase C [PLC] inhibitor), and 1-(5-isoquinolinylsufonyl)-2-methyl-piperazine (protein kinase C [PKC] inhibitor) prevented the mitogenic action of rHuEpo. Also the inhibition of Na+-K+-ATPase activity by ouabain blunted the stimulatory action of rHuEpo on cell proliferation. The mitogenic action of the hormone was correlated with cardiac membrane paranitrophenilphosphatase (pNPPase) and PKC activity, since concentrations of rHuEpo that stimulate DNA synthesis increased pNPPase and PKC activity. Moreover, the enzymatic inhibition of tyrosine kinase, PLC, and PKC attenuated the stimulatory action of rHuEpo upon cardiac pNPPase activity. In this paper we demonstrate a non-hematopoietic action of rHuEpo showing both mitogenic and enzymatic effect upon primary myocyte cell culture and on pNPPase activity of neonatal rat heart. These effects are related to the capacity of rHuEpo to stimulate Na+-K+-ATPase activity and appear to be secondary to the activation of tyrosine kinase and PKC, indicating that in the rHuEpo mediated mitogenic action on cardiomyocytes involves the activation of the same enzymatic pathways that have been described by other cytokines in different tissues. © 1996 Wiley-Liss, Inc.
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 469-476 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Endothelial cell-generated nitric oxide (NO) accounts in large part for the labile vasodilator termed endothelium-derived relaxing factor. Two distinct types of NO synthase exist: a “constitutive” type (cNOS), found in endothelial cells, and an “inducible” enzyme. Endothelial cells sense pO2 levels in the range of 70-20 torr and respond to this hypoxia by inducing transcription of genes which encode the vasoactive proteins PDGF-B and endothelin-1. Exposure of human or bovine endothelial cells to low oxygen tensions results in a profound decrease in the transcript for cNOS and a corresponding fall in cNOS protein levels. The ability of endothelial cells exposed to hypoxia to produce NO in response to bradykinin, a stimulator of cNOS activity, was coordinately impaired. Cobalt inhibited the expression of cNOS transcripts, suggesting a mechanism comparable to that by which oxygen tension regulates expression of other vasoregulatory genes. In the presence of actinomycin-D, hypoxia had no effect on cNOS transcripts, suggesting that new gene transcription is required for cNOS suppression. The reducing agents PDTC and N-Ac did not mimic cNOS gene suppression by hypoxia, suggesting that this suppression is not related to the redox state of the intracellular environment. Thus, regulation of cNOS function in response to environmental factors can occur at the level of gene expression as well as at the level of enzyme activation. © 1996 Wiley-Liss, Inc.
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  • 3
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Studies have shown that, among lipoxygenase metabolites examined, 15(S)-hydroperoxy-5,8,11,13-eicosa-tetraenoic acid (15[S]-HPETE), at micromolar concentrations, selectively causes injury to cultured endothelial cells. We investigated whether physiologically relevant concentrations of lipoxygenase metabolites affected the expression of cell adhesion molecules (CAMs) involved in the adhesion of leukocytes and/or the accumulation of leukocytes in the vascular endothelium, these being the initial events in endothelial cell injury. Among lipoxygenase metabolites, 15(S)-HPETE and 12(S)-HETE, at nanomolar concentrations, induced surface expression of a subset of cell adhesion molecules (CAM), ICAM-1, ELAM-1, and VCAM-1, in human umbilical vein endothelial cells (HUVEC), which is associated with an increased binding activity of the transcription factor, NF-κB, to the consensus motif common to the CAM genes in the HUVEC nuclear extracts. Furthermore, 15(S)-HPETE (1 nM) caused a threefold increase in the rate of transendothelial migration of vitamin D3-differentiated HL-60 monocyte-like cells and showed a thirtyfold increase in the phosphorylation of PECAM-1, an adhesion molecule involved in endothelial cell-cell adhesion. Both an antibody to PECAM-1 and the protein kinase C inhibitor, GF 109203X, reduced 15(S)-HPETE-induced transmigration of monocyte-like HL-60 cells by approximately 75% and 85%, respectively. Treatment of HUVEC with a phosphatase inhibitor, calyculin A, augmented both the phosphorylation of PECAM-1 and transmigration of monocyte-like HL-60 cells induced by 15(S)-HPETE. Our results show that 15(S)-HPETE, at physiological concentrations, induced activation of protein kinase C in HUVEC and leads to the phosphorylation of PECAM-1, thus facilitating the migration of monocyte-like HL-60 cells across the endothelial cell monolayer. It is suggested that phosphorylation/dephosphorylation events in PECAM-1 are important in regulating the trafficking of monocytes across the endothelial cell monolayer. © 1996 Wiley-Liss, Inc.
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  • 4
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The immortalized rat brain microvessel endothelial cell line RBE4 was used to investigate the in vitro regulation of two blood-brain barrier specific enzymes, gamma-glutamyl transpeptidase (GTP) and alkaline phosphatase (ALP). The effects of bFGF, astroglial factors, and retinoic acid (a cell differentiation agent) on GTP and ALP activities were separately or simultaneously studied in order to define optimal culture conditions for induction of these two specific enzymes of the blood-brain barrier. In the present study, a phenotypically distinct subpopulation of endothelial cells has been shown to develop from confluent cobblestone monolayers of RBE4 immortalized cerebral endothelial cells. These distinct cells were present within multicellular aggregates and specifically exhibited GTP and ALP activities. Addition of bFGF, astroglial factors, or retinoic acid induced the formation of these three-dimensional structures and in consequence an increase in GTP and ALP activities. For retinoic acid and astroglial factors, this increase could also be explained by the stimulation of either GTP or ALP expression in the phenotypically distinct positive cells associated with aggregates. Simultaneous treatment with retinoic acid and astroglial factors had a synergistic effect on GTP and ALP expression and thus may allow these distinct cells to evolve toward a more differentiated state. Since such results were also obtained with physiological concentrations of retinoic acid, we suggest that addition of this agent might contribute to greater differentiation of cells in in vitro blood-brain barrier models where endothelial cells are cocultured with astrocytes. © 1996 Wiley-Liss, Inc.
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  • 5
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Retinoids are potent inhibitors of growth and tumor progression in many mammary carcinoma cell lines, though regulation of growth in nontumorigenic mammary epithelial cells by retinoids is less clear. Here, we have characterized the inhibition of MAC-T (a nontransformed bovine mammary epithelial cell line) cellular proliferation by retinoids and their role in regulating insulin-like growth factor binding proteins (IGFBPs). Retinoic acid (RA) (100 nM) was a potent inhibitor of MAC-T cell proliferation. Retinol was 10-100 times less effective. Neither retinoid could completely arrest growth at noncytotoxic concentrations. Retinoic acid inhibited cellular proliferation by 1 h (P 〈 .05), but inhibition was fivefold greater by 24 h (P 〈 .01). This second stage of growth inhibition (after 12 h) was dependent upon protein synthesis. However, RA-induced inhibition of cellular proliferation did not persist, with thymidine incorporation increasing toward control levels by 4 days in culture. Retinoic acid was less effective in inhibiting thymidine incorporation when cells were stimulated with insulin, des(1-3) IGF-I, or Long(R3) IGF-I when compared to cells stimulated with native IGF-I or serum. Inhibition of proliferation by RA was associated with increased levels of IGFBP-2 in conditioned media and in plasma membrane preparations. Treatment with insulin or des(1-3) IGF-I resulted in the appearance of IGFBP-3 in conditioned media and on the cell surface. However, RA significantly reduced IGFBP-3 levels in conditioned media and eliminated IGFBP-3 associated with the plasma membrane. Thus, RA is a potent but transient inhibitor of bovine mammary epithelial cell proliferation, and this growth inhibition is correlated with increased IGFBP-2 accumulation and inhibition of IGF-I stimulated IGFBP-3 protein secretion. © 1996 Wiley-Liss, Inc.
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  • 6
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Both in cell culture and in vivo, keratinocytes that are migrating in response to a wound express enhanced levels of both urokinase-type plasminogen activator (uPA) and the uPA cell surface receptor (uPA-R). To explore the mechanism of this up-regulation, keratinocyte cultures were treated prior to wounding with a variety of metabolic and growth factor inhibitors in order to evaluate their effect on uPA and uPA-R expression. Actinomycin D and cycloheximide inhibited the up-regulation of both uPA and uPA-R, as determined by immunohistochemistry, indicating that RNA and protein syntheses are required for their induction in migrating keratinocytes. Neither removal of protein growth factors from the medium nor addition of inhibitory antibodies to a number of growth factors depressed uPA or uPA-R induction; these findings suggest that a variety of exogenous or endogenous growth factors [i.e., basic fibroblast growth factor (bFGF), epidermal growth factor (EGF), transforming growth factor-α (TGF-α), amphiregulin, and tumor necrosis factor-α (TNF-α)] do not have a critical role in the induction of uPA or uPA-R. In contrast, when protein kinase C (PKC) was either down-regulated with bryostatin 5 or inhibited with Ro31-8220 or staurosporine, the expression of both uPA and uPA-R was greatly decreased in migrating keratinocytes. Furthermore, pharmacologic activation of PKC enhanced uPA levels in non-wounded cultures. These data suggest that the enhanced expression of uPA and uPA-R in migrating keratinocytes is mediated by selective activation of PKC in these cells, perhaps secondary to alterations in the cytoskeleton induced by wounding. To test the requirement for uPA during keratinocyte migration in vitro, the extent of migration was quantified in the presence and absence of a variety of inhibitors in the wounded culture model. Migration was not altered by actinomycin D, cycloheximide, any of the above growth factor inhibitors, anti-uPA antibodies, a variety of inhibitors of uPA or plasmin enzymatic activity, or exogenous uPA. The independence of keratinocyte migration in vitro from uPA was further suggested by experiments which combined the phagokinetic assay of migration and the zymographic assay for pericellular uPA activity; no relationship was observed between pericellular uPA activity and the motility of individual cells. © 1996 Wiley-Liss, Inc.
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  • 7
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: We have examined the activities and mRNA abundance of two hydrogen peroxide metabolizing enzymes (glutathione peroxidase and catalase), glutathione concentration, and the activities of several enzymes that influence glutathione concentration, including glutathione reductase (GR), glucose-6-phosphate dehydrogenase (G-6-PD), and γ-glutamylcysteine synthetase (γ-GCS), in 29 skin fibroblast lines derived from donors ranging in age from 14 gestational weeks to 94 years of age. H2O2 metabolizing enzyme activities and mRNA abundances were greater in skin fibroblast cultures established from postnatal donors than in fetally derived cultures. There were no significant differences in either of these parameters in cell lines established from postnatal donors of different ages. Total glutathione concentration decreased with age, but GR activity appeared to be unaffected by age. In order to estimate the ability of the cultures to produce NADPH (an important component of cellular redox status and a cofactor for GR), we determined glucose-6-phosphate dehydrogenase activity and mRNA abundance. We were unable to directly measure γ-GCS activity or mRNA abundance in any of the skin lines or in fetal lung fibroblasts; however, we were able to indirectly demonstrate the presence of this enzyme by stimulating fetal lung fibroblasts with H2O2 following treatment with L-buthionine-S,R-sulfoximine (BSO), an inhibitor of γ-GCS activity. These results show that some, but not all, age-associated differences in antioxidant defense levels are maintained in a culture environment and are consistent with the hypothesis that developmental stages of life are associated with lower antioxidant defense levels than are present in postnatal phases of life. © 1996 Wiley-Liss, Inc.
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 562-569 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: α-Thrombin, bradykinin, and histamine are endogenous mediators that increase endothelial permeability. We examined the mechanism by which these three vasoactive mediators could alter permeability to albumin of human umbilical vein endothelial cells (HUVEC). HUVEC were grown to confluence on Transwell membranes and we monitored the flux of fluorescein isothiocyanate-labeled human serum albumin across the membrane from the upper to lower chamber of the Transwell. Addition of α-thrombin, bradykinin, or histamine increased the permeability coefficient of the HUVEC monolayer. At 30 min the permeability coefficient for α-thrombin was 4.92 × 10-6 cm/sec while histamine was 4.47 × 10-6 cm/sec. Maximum changes in the permeability coefficient were about three-fold control baseline values (1.59 × 10-6 cm/sec). There was also a temporal difference in the magnitude of the permeability coefficient. α-Thrombin and bradykinin induced HUVEC permeability was increased for the first 90 min after which it returned to control levels. In contrast, histamine increased the permeability of the HUVEC monolayer throughout the 2 h experiment. To determine a possible intracellular mechanism of the altered permeability coefficients, HUVEC were labeled with FURA-2 and intracellular calcium was monitored by digital fluorescence ratio imaging. Maximum intracellular calcium in HUVEC was increased by α-thrombin (245 ± 20 nM) and histamine (210 ± 22 nM), but not by bradykinin (70 ± 7 nM) as compared to control (69 ± 10). Fluorescent photomicrographs of HUVEC stimulated with the three agonists indicated that α-thrombin and histamine substantially altered HUVEC f-actin arrangement, while bradykinin had no effect on HUVEC f-actin distribution. These data support previous in vitro and in vivo studies demonstrating increased permeability by all three agonists. These data also show, for the first time, that histamine and α-thrombin increased permeability by calcium-dependent intracellular pathways, but bradykinin operates through a calcium-independent mechanism. © 1996 Wiley-Liss, Inc.
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996) 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 369-379 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: An excellent correlation has been established between the quantity of protein associated with nuclei isolated from heat-shocked cells and the level of hyperthermic cell killing. However, controversy remains about whether increases in nuclear-associated protein result from a heat-induced migration of cytoplasmic proteins into the nucleus or because hyperthermia reduces the solubility of nuclear proteins in the detergent buffers commonly used to isolate nuclei. To address this controversy, the nuclear protein content was measured in whole and detergent-extracted cells before and following hyperthermia. It was found that hyperthermia caused no significant change in the nuclear protein content of whole, unextracted cells, and when fluorescently labeled proteins were microinjected into the cytoplasm no gross change in the selective permeability of the nuclear membrane to soluble proteins was observed during or following hyperthermia. Measurements in extracted cells showed that the detergent buffers removed protein from both the nucleus and cytoplasm of control, nonheated cells and that hyperthermia reduced the extractability of both nuclear and cytoplasmic proteins. The amount of protein found in nuclei isolated from heated cells approached that observed in nuclei within nonheated whole cells as the hyperthermic exposure was increased. Thus, the dose-dependent, two- to threefold increase in the protein content of nuclei isolated from heated cells represents a heat-induced reduction in the extractability of proteins normally present within cell nuclei and does not result from a mass migration of cytoplasmic proteins into the nucleus, although some specific proteins (e.g., the 70 KDa heat shock protein) do migrate to the nucleus following heat shock. Differential scanning calorimetry (DSC) measurements of whole cells, isolated nuclei, cytoplasts, and karyoplasts supported these conclusions and suggested that most of the detergent-insoluble proteins remaining in the nuclei and cytoplasm of heated cells are in their native state. Thus, a relatively small amount of denatured protein may be sufficient to initiate and sustain insoluble protein aggregates comprised of mostly native proteins. Analyses of the DSC data also implied that the previously identified critical target proteins, predicted to have a Tm of 46.0°C, are present in both the nucleus and cytoplasm. © 1996 Wiley-Liss, Inc.
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  • 11
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 394-405 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: It is still a subject of debate whether hepatocytes have the ability to express TGF-β. Therefore, we investigated in freshly isolated and in monolayer cultures of rat hepatocytes the expression of TGF-β isoforms at the RNA and protein level applying RT-PCR, immunocytochemistry, immunoblotting, and functional assays of TGF-β, TGF-β1, -β2, and -β3 transcripts were detected in cultured cells, and the level of mRNA increased up to 48/72 h, but TGF-β1 transcripts were absent in freshly isolated cells. Using APAAP stainings the proteins of all three TGF-β isoforms were observed in hepatocyte cultures from 5-96 h, but in hepatocytes in the liver in situ and in freshly isolated cell suspensions TGF-β staining was negative. SDS-PAGE under reducing conditions followed by Western blotting detected in cell lysates the subunit of mature TGF-β at about 13 kd. Analysis of TGF-β bioactivity with the mink cell (Mv1Lu) proliferation inhibition assay and competitive radioligand assay confirmed in activated (i.e., acidified and subsequently neutralized) hepatocyte-conditioned media the presence of TGF-β, which, however, is almost entirely in the latent form. It is concluded that TGF-β can be expressed in cultured hepatocytes and that the level of expression is quickly upregulated under abnormal, not yet known, microenvironmental conditions. © 1996 Wiley-Liss, Inc.
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  • 12
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Prior studies have shown that vitamin D regulation of protein kinase C activity (PKC) in the cell layer of chondrocyte cultures is cell maturation-dependent. In the present study, we examined the membrane distribution of PKC and whether 1α,25-(OH)2D3 and 24R,25-(OH)2D3 can directly regulate enzyme activity in isolated plasma membranes and extracellular matrix vesicles. Matrix vesicle PKC was activated by bryostatin-1 and inhibited by a PKC-specific pseudosubstrate inhibitor peptide. Depletion of membrane PKC activity using isoform-specific anti-PKC antibodies suggested that PKCα is the major isoform in cell layer lysates as well as in plasma membranes isolated from both cell types; PKCζ is the predominant form in matrix vesicles. This was confirmed in Western blots of immunoprecipitates as well as in studies using control peptides to block binding of the isoform specific antibody to the enzyme and using a PKCζ-specific pseudosubstrate inhibitor peptide. The presence of PKCζ in matrix vesicles was further verified by immunoelectron microscopy. Enzyme activity in the matrix vesicle was insensitive to exogenous lipid, whereas that in the plasma membrane required lipid for full activity. 1,25-(OH)2D3 and 24,25-(OH)2D3 inhibited matrix vesicle PKC, but stimulated plasma membrane PKC when added directly to the isolated membrane fractions. PKC activity in the matrix vesicle was calcium-independent, whereas that in the plasma membrane required calcium. Moreover, the vitamin D-sensitive PKC in matrix vesicles was not dependent on calcium, whereas the vitamin D-sensitive enzyme in plasma membranes was calcium-dependent. It is concluded that PKC isoforms are differentially distributed between matrix vesicles and plasma membranes and that enzyme activity is regulated in a membrane-specific manner. This suggests the existence of a nongenomic mechanism whereby the effects of 1,25-(OH)2D3 and 24,25-(OH)2D3 may be mediated via PKC. Further, PKCζ may be important in nongenomic, autocrine signal transduction at sites distal from the cell. © 1996 Wiley-Liss, Inc.
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  • 13
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 406-412 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: It has been shown that tumor-promoting phorbol ester, 12-O-tetradecanoylphorbol-13-acetate (TPA), stimulates the proliferation of normal human melanocytes, whereas it inhibits the growth of human melanoma cell lines. The expression of protein kinase C (PKC) subspecies, the major intracellular receptors for TPA, was examined in normal melanocytes and the four melanoma cell lines HM3KO, MeWo, HMV-1, and G361. PKC was partially purified and then separated into subspecies by column chromatography on Mono Q and hydroxyapatite successively, and finally subjected to immunoblot analysis using antibodies specific for the PKC subspecies. Of the PKC subspecies examined, δ-, ε-, and ζ-PKC were detected in both normal melanocytes and the four melanoma cell lines. In contrast, both α-PKC and β-PKC were expressed in normal melanocytes, whereas either α-PKC or β-PKC was detected in melanoma cells. Specifically, HM3KO, MeWo, and HMV-1 cells were shown to contain α-PKC but not β-PKC, while G361 cells expressed β-PKC but not α-PKC. The growth of these melanoma cells was suppressed by TPA treatment, and the growth of the G361 cells lacking α-PKC was inhibited more efficiently than the other melanoma cell lines which lacked β-PKC. It was further shown that β-PKC was not detected in freshly isolated human primary or metastatic melanoma tissues. These results suggest that the expression of α-PKC or β-PKC may be altered during the malignant transformation of normal melanocytes and that loss of α-PKC or β-PKC may be related to the inhibitory effect of TPA on the growth of melanoma cells. © 1996 Wiley-Liss, Inc.
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  • 14
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 413-421 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Retinoic acid receptor (RAR) α and γ mRNAs were constitutively expressed in B16 melanoma cells with or without retinoic acid (RA) treatment. RARβ mRNA, however, was significantly expressed only after exposure to RA. Induction of RARβ by RA occurred within 1 h and was not inhibited by cycloheximide (i.e., did not require new protein synthesis). All three RAR mRNA levels were dramatically decreased with 8-bromo-cyclic AMP treatment and could not be rescued by addition of RA. Analysis of RARγ revealed that this decrease occurred within 1 h of exposure to 8-bromo-cyclic AMP and was not blocked by simultaneous treatment with cycloheximide. The stability of RARγ mRNA was not altered by cyclic AMP treatment. Nuclear extracts from 8-bromo-cyclic AMP-treated cells showed a large decrease in protein binding to a retinoic acid response element (RARE) oligonucleotide compared to control cells. This correlated with a marked reduction of RA-stimulated RARE-reporter gene activity in transfected cells which were treated with cyclic AMP. Pretreatment of B16 cells with cyclic AMP prior to RA addition dramatically reduced induction of PKCα, an early marker of RA-induced cell differentiation. Thus, cyclic AMP can antagonize the action of RA most likely via its ability to inhibit RAR expression. © 1996 Wiley-Liss, Inc.
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  • 15
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    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 422-433 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Hepatocyte growth factor (HGF) and epidermal growth factor (EGF) are known to stimulate the locomotion of epithelial cells in culture. However, the molecular mechanisms which mediate these important changes are poorly understood. Here we have determined the effects of HGF and EGF on hepatocyte morphology, cytoskeletal organization, and the expression of molecular motor-encoding genes. Primary cultures of hepatocytes were treated with 10 ng/ml of HGF or EGF and observed with phase and fluorescence microscopy at 10, 24, and 48 h after treatment. We found that, over time, treated cells spread and became elongated after 24 h of treatment while forming long processes with dramatic alterations in the microtubule and actin cytoskeletons by 48 h. Quantitative Northern blot analysis was performed to measure expression of cytoskeletal-(β-actin, α-tubulin) and molecular motor-(dynein, kinesin, and myosin Iα and II) encoding genes which may contribute to this change in form. We observed the highest increase in levels of expression for myosin II (3.3-fold), kinesin (2.7-fold), myosin Iα (2.2- fold), and α-tubulin (1.9-fold) after only 2 h of treatment with HGF. In contrast, EGF upregulated the expression of myosin Iα (2.4-fold), kinesin (1.5-fold), and dynein (1.5-fold) at 10 h. The expression of the β-actin gene remained constant in HGF-treated cells, while EGF induced a slight upregulation after 10 h of treatment. These results show for the first time that a selective upregulation of molecular motor-encoding genes correlates with alterations in cell shape and motility induced by HGF and EGF. © 1996 Wiley-Liss, Inc.
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  • 16
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Although hepatocellular carcinoma (HCC) cells are more resistant to anoxic injury than normal hepatocytes, the mechanisms responsible for this differential sensitivity remain obscure. Because enhanced calpain protease activity contributes to hepatocyte necrosis, we tested the hypothesis that HCC cells resist anoxia by preventing calpain activation. Cell viability in two rat HCC cell lines (N1S1 and McA-RH7777 cells) was fourfold greater compared to rat hepatocytes after 4 h of anoxia. Although calpain activity increased twofold in rat hepatocytes during anoxia, no increase in calpain activity occurred in HCC cells. Western and Northern blot analysis revealed greater or equivalent expression of calpains and calpastatin in HCC cells compared to hepatocytes. Because increases in cytosolic free Ca++ (Cai++) and phospholipid degradation products regulate calpains in vitro, we measured Cai++ and phospholipid degradation. Ca++i did not change in any cell types during 60 min of anoxia. In contrast, phospholipid degradation was fourfold greater in hepatocytes compared to HCC cells. Melittin, a phospholipase A2 activator, increased calpain activity and cell necrosis in all cell types; melittin-induced cell necrosis was ameliorated by a calpain protease inhibitor. In summary, these data demonstrate for the first time 1) calpain activation without a measureable increase in Ca++i, 2) phospholipase-mediated calpain activation in hepatocytes and HCC cells, and 3) the adaptive mechanism responsible for the resistance of HCC cells to anoxia - an inhibition of phospholipid-mediated calpain activation. Interruption of phospholipase-mediated calpain activation may be a therapeutic strategy for preventing anoxic cell injury. © 1996 Wiley-Liss, Inc.
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  • 17
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    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 167 (1996), S. 443-450 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Given the evidence that basic fibroblast growth factor (FGF-2) can protect neural and retinal cells from degeneration, we evaluated the potential of this growth factor to protect sensory cells in the inner ear. When sensory cells of the organ of Corti are exposed to aminoglycoside antibiotics such as neomycin either in vivo or in vitro, significant ototoxicity is observed. The in vitro cytotoxic effects of neomycin are dose and time dependent. In neonatal rat organ of Corti cultures, complete inner and outer hair cell destruction is observed at high (mM) concentrations of neomycin while inner hair cell survival and severely damaged outer hair cells are noted at moderate (μM) concentrations, with a maximal effect observed after 2 days of culture. Approximately 50% of cochlear outer hair cells are lost at a dose of 35 μM neomycin, and most surviving cells show disorganized stereocilia. Inner hair cells show primarily disorganization of their stereocilia. A significant protective effect is observed when the organ of Corti is pre-treated with FGF-2 (500 ng/ml) for 48 hours, and then FGF-2 is included with neomycin in the culture medium. A greater extent of outer hair cell survival and a significant decrease in stereociliary damage are noted with FGF-2. However, disorganization of inner hair cell stereocilia is unaffected by FGF-2. The protective effect of FGF-2 is specific, since interleukin-1B, nerve growth factor, tumor necrosis factor, and epidermal growth factor are ineffective, while retinoic acid and transforming growth factor alpha show only a moderate protective effect. These results confirm the potential of molecules like FGF-2 for preventing cell death due to a variety of causes. © 1996 Wiley-Liss, Inc.
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  • 18
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    Journal of Cellular Physiology 167 (1996), S. 523-538 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Primary cultures were initiated from marrow, spleen, and bone explants of an adult H-2Kb-tsA58 transgenic mouse (immortomouse). All cultures were initiated in immortalizing conditions, and an additional marrow culture was first incubated for 1 week in standard conditions and then switched to immortalizing conditions. Marrow cells immediately immortalized were designated the marrow immediate population (MIP); those immortalized after 1 week were termed the marrow delayed population (MDP). MIP and MDP cells both contained a mixture of fibroblastic or flattened cells, and the MIP cells contained an additional subpopulation of adipocytic (Oil Red-O positive) cells. Alkaline phosphatase expression was induced by dexamethasone (10-7 M) in MDP cells while MIP, spleen, and bone explant cells had only a low level of expression. MDP and MIP cells differentiated into bone when combined with porous calcium phosphate ceramics and implanted subcutaneously into nude mice while bone- and spleen-derived cells did not. Clones were isolated from the MDP and MIP cell populations and tested for differentiated phenotypes. Some MIP-derived clones exhibited adipocytic characteristics while MDP-derived subclones were negative. Histologic examination of porous ceramic implanted clones showed that all of the clones had osteogenic potential. Clones exposed to either dexamethasone, human recombinant bone morphogenetic protein-2, or horse serum plus hydrocortisone showed differences in expression of adipocytic or osteogenic markers. These immortalized cultures have retained both adipocytic and osteogenic potential even after 1 year of continuous culture, and provide a model system for clonal analysis of the developmental potential of marrow-derived mesenchymal precursor cells. © 1996 Wiley-Liss, Inc.
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  • 19
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    Journal of Cellular Physiology 167 (1996), S. 539-547 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Bovine pulmonary arterial endothelial cells (BPAEC) were grown on permeable polycarbonate membrane filters suspended between two compartments representing the blood vessel lumen and the interstitium. This in vitro model of an endothelium was subjected to a battery of tests to unravel the mechanisms of zinc transport from the blood into peripheral tissues. Transport of 65Zn across BPAEC from media containing zinc concentrations up to 50 μmol/L exhibited both saturable and nonsaturable kinetics. Vmax of the saturable component was 246 ± 43 pmol/(h × cm2) and Km was 2.3 ± 1.3 μmol/L. Transport was pH and temperature sensitive and substantially influenced by albumin and histidine concentrations, but not influenced by analogous minerals or metabolic inhibitors. Inhibition of coated vesicle formation by depletion of intracellular potassium reduced 65Zn transport. Albumin carrying a zinc ion crossed the endothelium more rapidly than zinc-free albumin. When evaluated together, this body of evidence supports the existence of two major pathways of zinc transport across the pulmonary endothelium, but neither involves entry into the endothelial cells. One pathway involves receptor-mediated cotransport with albumin by transcytotic vesicles. The other is nonsaturable and involves cotransport with albumin and low molecular weight ligands, principally histidine, through intercellular junctions and nonselective, bulk-fluid transcytosis. © 1996 Wiley-Liss, Inc.
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  • 20
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    Journal of Cellular Physiology 167 (1996), S. 548-555 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Eosinophils represent major effector cells in the allergic inflammation. In contrast to neutrophils, the mechanism of eosinophil activation during the inflammatory response is poorly understood. In this study, the relation between calcium fluxes, chemotaxis, and actin polymerization in eosinophils from healthy non-atopic donors was investigated. Pre-incubation of eosinophils with the intracellular calcium chelator BAPTA dose-dependently prevented an increase in the intracellular calcium concentration ([Ca2+]i), whereas the depletion of extracellular calcium in the test medium had no effect. The chemotactic response of eosinophils, which was measured by the modified boyden chamber technique upon stimulation with RANTES, C5a and PAF, was dose-dependently inhibited by the chelation of intracellular calcium as well as inactivation of the cells in Ca2+-depleted medium. To evaluate whether other cell functions which are involved in the migratory response of eosinophils might be dependent on intracellular and extracellular calcium, actin polymerization was investigated. Flow-cytometric measurement of F-actin with NBD-phallacidin revealed that actin polymerization in human eosinophils in response to RANTES, C5a, and PAF was dose-dependently inhibited by the intracellular calcium chelator BAPTA. Since it is well known that actin polymerization in neutrophils is not affected by chelation of intracellular calcium, actin polymerization in these cells was investigated under the same conditions as for eosinophils. In contrast to eosinophils, BAPTA did not inhibit actin polymerization in neutrophils. In summary, these data demonstrate that intracellular calcium fluxes represent a prerequisite for eosinophil chemotaxis and actin polymerization in human eosinophils. Furthermore, regulation of actin polymerization in eosinophils differed from that of neutrophils on the level of intracellular calcium fluxes. © 1996 Wiley-Liss, Inc.
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  • 21
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Insulin-like growth factor-1 (IGF1) has been reported to stimulate hair elongation and to facilitate maintenance of the hair follicle in anagen phase. However, little is known about IGF1 signaling in the hair follicle. In this study we investigate the effects of IGF1, glucocorticoids, and retinoids on dermal papilla (DP) cell production of insulin-like growth factor binding proteins (IGFBPs). IGFBPs comprise a family of IGF binding proteins that are produced and released by most cell types. They bind to IGFs to either enhance or inhibit IGF activity. In the present report we identify IGFBP-3 as being produced and released by cultured human dermal papilla (DP) cells. IGFBP-3 levels are increased fivefold by retinoic acid, eightfold by dexamethasone, and tenfold by IGF1. DP cells are known to produce IGF1, and so the observed stimulation of DP cell IGFBP-3 production by IGF1 is consistent with the idea that DP cells possess the IGF transmembrane receptor kinase and are autoregulated by IGFs. The level of another IGFBP, tentatively identified as IGFBP-2, is, in contrast, not regulated by these agents. IGFBP-3 has been shown to inhibit the activity of IGFs in a variety of systems. Our results are consistent with a model in which retinoids and glucocorticoids inhibit IGF action on DP cells and surrounding matrix cells by stimulating increased DP cell production of IGFBP-3. The IGFBP-3, in turn, forms a complex with free IGF1 to reduce the concentration of IGF1 available to stimulate hair elongation and maintenance of anagen phase. © 1996 Wiley-Liss, Inc.
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  • 22
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    BioEssays 18 (1996), S. 439-442 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Members of the astacin family of metalloproteinases such as human bone morphogenetic protein 1 (BMP-1) have previously been linked to cell differentiation and pattern formation during development through a proposed role in the activation of latent growth factors of the TGF-β superfamily. Recent finding(1) indicate that BMP-1 is identical to pro-collagen C-proteinase, which is a metalloproteinase involved in extracellular matrix (ECM) formation. This observation suggests that a functional link may exist between astacin metalloproteinases, growth factors and cell differentiation and pattern formation during development. Taken together, current studies indicate that BMP-1 and possibly other astacin metalloproteinases are multifunctional enzymes that act directly on growth factors and the ECM. In combination, these dual actions would have profound effects on developmental processes.
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  • 23
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    BioEssays 18 (1996), S. 443-445 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Conceptual developments have defined concrete questions about the timing and precise location of cellular pattern formation. Plants in general, and the trichomes of Arabidopsis in particular, are remarkably suited for research on these problems. Genetic analysis requires the quantitative characterizations of the developmental processes by which patterning occurs. Larkin et al.(1) have provided measures of the non-random distances between trichomes. They have also obtained evidence about the cell lineages leading to trichome development, and this evidence constrains the possible role of intracellular programs. Continued genetic analysis may call for the identification of mutations that are expressed only during development and whose effects are corrected before the phenotype matures.
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  • 24
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    BioEssays 18 (1996), S. 447-452 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Chromosome ends have been implicated in the meiotic processes of the nematode Caenorhabditis elegans. Cytological observations have shown that chromosome ends attach to the nuclear membrane and adopt kinetochore functions. In this organism, centromeric activity is highly regulated, switching from multiple spindle attachments all along the chromosome during mitotic division to a single attachment during meiosis. C. elegans chromosomes are functionally monocentric during meiosis. Earlier genetic studies demonstrated that the terminal regions of the chromosomes are not equivalent in their meiotic potentials. There are asymmetries in the abilities of the ends to recombine when duplicated or deleted. In addition, mutations in single genes have been identified that mimic the meiotic effects of a terminal truncation of the X chromosome. The recent cloning and characterization of the C. elegans telomeres has provided a starting point for the study of chromosomal elements mediating the meiotic process.
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  • 25
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    BioEssays 18 (1996), S. 453-464 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Serine proteinase cleavage of proteins is essential to a wide variety of biological processes and is primarily regulated by protein inhibitors. Many inhibitors are conformationally rigid simulations of optimal serine proteinase substrates, which makes them highly efficient competitive inhibitors of target proteinases. In contrast, members of the serpin family of serine proteinase inhibitors display extensive flexibility and polymorphism, particularly in their reactive site segments and in β-sheet secondary structure, which can take up and expel strands. Reactive site and β-sheet polymorphism appear to be coupled in the serpins and may account for the extreme stability of serpinproteinase complexes through the insertion of the reactive site strand into a β-sheet. These unusual properties may have opened an adaptive pathway of proteinase regulation that was unavailable to the conformationally rigid proteinase inhibitors.
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  • 26
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    BioEssays 18 (1996), S. 473-480 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Vulval development in the Caenorhabditis elegans hermaphrodite represents a simple, genetically tractable system for studying how cell signaling events control cell fata decisions. Current models suggest that proper specification of vulval cell fates relies on the integration of multiple signaling systems, including one that involves a receptor tyrosine kinase (RTK)→Ras→mitogen activated protein kinase (MAPK) cascade and one that involves a LIN-12/Notch family receptor. In this review, we first discuss how genetic strategies are being used to identify and analyze components that control vulval cell fate decisions. We then describe the different signaling systems that have been elucidated and how they relate to one another. Finally, we highlight several recently characterized genes that encode positive regulators, negative regulators or potential targets of the RTK→Ras→MAPK cascade involved in vulval induction.
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  • 27
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    BioEssays 18 (1996), S. 465-471 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Chloroplasts and other plastids are plant cell organelles that account for major biochemical functions. They contain their own gene expression system but are integrated into the signaling network of the entire cell. Both nuclear and plastid genes are involved in chloroplast biogenesis, and the gene expression pathways both inside and outside the organelle are subject to developmental and environmental control. The plastid transcription apparatus reflects this general scheme, with a basic organelle-encoded enzymatic machinery surrounded by factors that may be encoded by nuclear genes. Among the transcription regulatory mechanisms thought to play a role during plastid development are: (1) differential usage of promoter elements; (2) phosphorylation of transcription factors by a protein kinase, which is itself subject to phosphorylation and redox control; (3) dynamic changes in the composition of the transcription apparatus. In etioplasts, the dominating polymerase ‘B’ is a bacterial-type enzyme, whereas the major chloroplast polymerase ‘A’ is a much larger enzyme reminiscent of those in the nucleus. These two enzyme forms may share common components and recruit others during development.
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  • 28
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    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 29
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    BioEssays 18 (1996), S. 523-527 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: A recent study(1) of sequence data from many different proteins has suggested that contemporary prokaryotes and eukaryotes may have shared a common ancestor as recently as 2 billion years ago (the molecular clock). Strong evidence from the geological record, however, indicates that oxygen-producing microorganisms, perhaps similar to modern cyanobacteria, existed 3.5 billion years ago. The fossil evidence, therefore, suggests that any common ancestor of prokaryotes and eukaryotes must have existed at least 1.5 billion years earlier than suggested by the molecular clock evidence. The discrepancy between molecular and geological evidence for the age of modern cells is considered here, as are aspects of gene descent in the tree of life that might help to account for it.
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  • 30
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    BioEssays 18 (1996), S. 609-612 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The integrity of epithelia depends largely on specialised adhesive structures, the adherens junctions. Several of the components required for building these structures are highly conserved between vertebrates and insects (e.g. E-cadherin and α- and β-catenin), while others have so far been found only in invertebrates (e.g. crumbs). Two recent papers(1,2) show that the Drosophila E-cadherin is encoded by the gene shotgun. Phenotypic analyses of shotgun as well as armadillo (β-catenin) and crumbs mutants provide new insights into the mechanisms by which adherens junctions are built and, further, show that the requirement for E-cadherin largely depends on the morphogenetic activity of an epithelium.
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  • 31
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    BioEssays 18 (1996), S. 613-616 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: In vertebrate development, the HOX genes act to specify cell identity along much of the anterior-posterior axis of the embryonic central nervous system. In all vertebrates examined to date, the vitamin A metabolite retinoic acid is implicated in the patterning of the anterior posterior axis and the induction of HOX gene expression. Two recent papers have extended the study of retinoic acid induction of HOX genes to the closest relatives of the vertebrates, amphioxus and tunicates(1,2). In both these species, exogenous retinoic acid is able to induce ectopic expression of HOX 1 genes in the anterior central nervous system. This suggests that retinoic acid control of anterior-posterior axis formation and HOX induction is not specific to vertebrates. However, in the more distantly related echinoderms and arthropods, retinoic acid does not seem to act in the same way. Thus the role of retinoic acid in anterior-posterior axis specification may be a chordate innovation, perhaps linked to the evolution of another chordate character, the dorsal neural tube.
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  • 32
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    BioEssays 18 (1996), S. 621-630 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The vertebrate eye lens has been used extensively as a model for developmental processes such as determination, embryonic induction, cellular differentiation, transdifferentiation and regeneration, with the crystallin genes being a prime example of developmentally controlled, tissue-preferred gene expression. Recent studies have shown that Pax-6, a transcription factor containing both a paired domain and homeodomain, is a key protein regulating lens determination and crystallin gene expression in the lens. The use of Pax-6 for expression of different crystallin genes provides a new link at the developmental and transcriptional level among the diverse crystallins and may lead to new insights into their evolutionary recruitment as refractive proteins.
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  • 33
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    BioEssays 18 (1996), S. 747-756 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: In eukaryotic cells, messenger RNAs are formed by extensive posttranscriptional processing of primary transcripts, assembled with a large number of proteins and processing factors in ribonucleoprotein complexes. The protein moiety of these complexes mainly constitutes a class of about 20 major polypeptides called heterogeneous nuclear ribonucleoproteins or hnRNPs. The function and the mechanism of action of hnRNPs is still not fully understood, but the identification of RNA binding domains and RNA binding specificities, and the development of new functional assays, has stimulated interest in them. In contrast to previous models that hypothesised a mere structural (histone-like) function, a more diversified and dynamic role for these proteins is now emerging. In fact, they can be viewed as a subset of the trans-acting pre-mRNA maturation factors. They might actively participate in post-transcriptional events such as regulated splicing and mRNA export. Moreover, recent data suggest an involvement of some of these proteins in molecular diseases. Here we present an overview of the most relevant properties of hnRNPs and discuss some emerging ideas on theiir roles.
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  • 34
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    BioEssays 18 (1996), S. 773-775 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
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  • 35
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    BioEssays 18 (1996), S. 757-765 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: DNA junctions are by-products of recombinational repair, during which a damaged DNA sequence, assisted by RecA filament, invades an intact homologous DNA to form a joint molecule. The junctions are three-strand or four-strand depending on how many single DNA strands participate in joint molecules. In E. coli, at least two independent pathways to remove the junctions are proposed to operate. One is via RuvAB-promoted migration of four-strand junctions with their subsequent resolution by RuvC. In vivo, RuvAB and RuvC enzymes might work in a single complex, a resolvasome, to clean DNA from used RecA filaments and to resolve four-strand junctions. An alternative pathway for junction removal could be via RecG-promoted branch migration of three-strand junctions, provided that an as yet uncharacterized endonuclease activity incises one of the strands in the joint molecules.
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  • 36
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    BioEssays 18 (1996), S. 767-772 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: A first year graduate student, Ann Dee Margulies, changed my research career in 1962 by challenging me to direct her in the isolation of recombination-deficient mutants of Escherichia coli K-12. She succeeded in isolating two mutants, which conjugated with donor strains and received the donor DNA, but could not recombine that DNA with their own chromosomes. Ann Dee showed that both mutants were much more sensitive to UV radiation than was the wild type. Furthermore, she showed that one of these mutants carried a single mutation affecting both recombination and resistance. This work, published in 1965, was the first demonstration of the recA gene of E. coli. Subsequent work led to the discovery of many more recombination genes, the phenomenon of post replication-recombination repair, the invention of the SOS hypothesis and the discovery of genes encoding proteins with similar primary structure and function in all major groups of organisms. This article honors the memory of Ann Dee.
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    BioEssays 18 (1996), S. 776-776 
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    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
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  • 38
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    BioEssays 18 (1996) 
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    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
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  • 39
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    BioEssays 18 (1996), S. 777-780 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Recent experiments have begun to decipher the molecular dialog that mediates differentiation at sites of synaptic between neurons and their targets. It had been hypothesized that the protein agrin is released by axon terminals at embryonic neuromuscular junctions and binds to a receptor on the myofiber surface to trigger postsynaptic differentiation. Now a genetic ‘Knockout’ experiment has confirmed the essential role of agrin in signaling between developing nerve and muscle(1). A second ‘knockout’ has shown that the muscle-specific receptor tyrosine kinase MuSK is a critical element in the agrin-induced signaling cascade(2). Additional results suggest that MuSK may comprise a portion of the agrin receptor(3).
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  • 40
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    BioEssays 18 (1996), S. 817-824 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: In the mammalian brain dopamine systems play a central role in the control of movement, hormone release, emotional balance and reward. Alteration of dopaminergic neurotransmission is involved in Parkinson's disease and other movement disorders, as well as in some psychotic syndromes. This review summarises recent findings, which shed some light on signals and cellular interactions involved in the specification and maturation of the dopaminergic function during neurogenesis. In particular we will focus on three major issues: (1) the differentiation of dopaminergic neurones triggered by direct contact with the midbrain floor plate cells through the action of sonic hedgehog; (2) the neurotrophic factors acting on dopaminergic neurones; and (3) the role of target striatal cells on the survival and the axonal growth of developing or grafted dopaminergic neurones.
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  • 41
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    BioEssays 18 (1996), S. 849-850 
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    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
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  • 42
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    BioEssays 18 (1996), S. 854-854 
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    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
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  • 44
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    BioEssays 18 (1996), S. 867-874 
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    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Physiological investigation has demonstrated that the central nervous system monitors body composition and adjusts energy intake and expenditure to stabilize total adipose tissue mass. Genetic variations in the signalling molecules involved in this regulatory system account for the heritable component of body fat content. The application of molecular techniques to rodent models of Mendelian obesity has resulted in the characterization of five loci at which mutations produce an abnormal accumulation of body fat. The genes at these loci include agouti, which encodes a molecule that antagonizes the binding of alpha melanocyte-stimulating hormone to its receptor; fat, which encodes carboxypeptidase E; tubby, which encodes a putative phosphodiesterase; obese, which encodes a circulating satiety protein; and diabetes, which encodes the receptor for the obese gene product. A more detailed understanding of the functional interrelationships of these genes should lead to important new insights into the causes and potential therapies for human obesity.
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  • 46
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    BioEssays 18 (1996), S. 925-935 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The invention in 1986 of scanning force microscopy (SFM) provided a new and powerful tool for the investigation of biological structures. SFM yields a three-dimensional view at nanometer resolution of the surface topography associated with biological objects. The potential for imaging either macromolecules or biomolecules and cells under native (physiological) conditions is currently being exploited to obtain functional information at the molecular level. In addition, the forces involved in individual bimolecular interactions are being assessed under static and dynamic conditions. In this report we focus on the imaging capability of the SFM. The rather broad spectrum of applications represented is intended to orient the prospective user of biological SFM.
    Additional Material: 8 Ill.
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  • 47
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    BioEssays 18 (1996), S. 919-923 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Expression of transgenes in mice, when examined with assays that can distinguish individual cells, is often found to be heterocellular, or variegated. Line-to-line variations in expression of a transgene may be due largely to differences in the proportion of cells in which it is expressed. Variegated silencing by centromeric heterochromatin is well described, but other factors may also affect transgene silencing in mice. Tandem arrays of transgenes themselves form heterochromatin, and some cell lineages may tend to silence transgenes because of extensive facultative heterochromatin in their nuclei. The cis-acting transcriptional control elements within a transgene inhibit silencing, and strainspecific differences in chromatin proteins may strongly influence the extent of variegation. The accessibility of multiple differentiated cell lineages in mice suggests that they may provide a tool for dissecting the role of chromatin-mediated silencing in cell differentiation and tissue-specific gene expression.
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  • 48
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    BioEssays 18 (1996), S. 940-940 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
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  • 49
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    New York, NY : Wiley-Blackwell
    BioEssays 18 (1996) 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
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  • 50
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    BioEssays 18 (1996), S. 941-942 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
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  • 51
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    BioEssays 18 (1996), S. 983-991 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Mitochondria contain a molecular genetic system to express the 13 protein components of the electron transport system encoded in the mitochondrial genome (mtDNA). Defects in the function of this system result in some diaseases, many of which are multisystem disorders, prominently involving highly aerobic, postmitotic tissues. These defects can be caused by large-scale rearrangements of mtDNA, by point mutations, or by nuclear gene mutations resulting in abnormalities in mtDNA. Although any of these mutations would be expected to produce a similar clinical phenotype by compromising oxidative phosphorylation, the surprising and puzzling result is that different clinical phenotypes are generally associated with specific mtDNA mutations. Moreover, the same mutation can produce a distinct clinical phenotype in different individuals or pedigrees. MtDNA rearrangements are also found in aged individuals, but at a subclinical level, suggesting that normal and pathological processes can differ by the effect of genetic or environmental factors on the error rate of mtDNA replication.
    Additional Material: 2 Ill.
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  • 52
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    BioEssays 18 (1996), S. 999-1007 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The prelude to successful human somatic gene therapy, i.e. the efficient transfer and expression of a variety of human genes into target cells, has already been accomplished in several systems. Safe methods have been devised to do this using non-viral and viral vectors. Potentially therapeutic genes have been transferred into many accessible cell types, including hematopoietic cells, hepatocytes and cancer cells, in several different approaches to ex vivo gene therapy. Successful in vivo gene therapy requires improvements in tissuetargeting and new vector design, which are already being sought. Gene-transfer protocols have been approved for human use in inherited diseases, cancer and acquired disorders. Althouth the results of these trials to date have been somewhat disappointing, human somatic cell gene therapy promises to be an effective addition to the arsenal of approaches to the therapy of many human diseases in the 21st century if not sooner.
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  • 53
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 515-548 
    ISSN: 0271-2091
    Keywords: incompressible ; Navier-Stokes ; contravariant velocities ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: To analyse an incompressible Navier-Stokes flow problem in a boundary- fitted curvilinear co-ordinate system is definitely not a trivial task. In the primitive variable formulation, choices between working variables and their storage points have to be made judiciously. The present work engages contravariant velocity components and scalar pressure which stagger each other in the mesh to prevent even-odd pressure oscillations from emerging. Now that smoothness of the pressure field is attainable, the remaining task is to ensure a discrete divergence-free velocity field for an incompressible flow simulation. Aside from the flux discretizations, the indispensable metric tensors, Jacobian and Christoffel symbols in the transformed equations should be approximated with care. The guiding idea is to get the property of geometric identity pertaining to these grid-sensitive discretizations. In addition, how to maintain the revertible one-to-one equivalence at the discrete level between primitive and contravariant velocities is another theme in the present staggered formulation. A semi-implicit segregated solution algorithm felicitous for a large-scale flow simulation was utilized to solve the entire set of basic equations iteratively. Also of note is that the present segregated solution algorithm has the virtue of requiring no user-specified relaxation parameters for speeding up the satisfaction of incompressibility in an optimal sense. Three benchmark problems, including an analytic problem, were investigated to justify the capability of the present formulation in handling problems with complex geometry. The test cases considered and the results obtained herein make a useful contribution in solving problems subsuming cells with arbitrary shapes in a boundary-fitted grid system.
    Additional Material: 21 Ill.
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  • 54
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 619-641 
    ISSN: 0271-2091
    Keywords: convective transport ; monotonicity ; finite volume ; boundary-fitted co-ordinates ; turbulence modelling ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: A formally third-order accurate finite volume upwind scheme which preserves monotonicity is constructed. It is based on a third-order polynomial interpolant in Leonard's normalized variable space. A flux limiter is derived using the fact that there exists a one-to-one map between normalized variable and TVD spaces. This scheme, which is relatively simple and quite compact, is implemented in a staggered general co-ordinates finite volume algorithm including the standard k-ε model and applied to the turbulence transport equations. A number of test problems demonstrate the utility of the proposed scheme. It is shown that in cases where turbulence convection is dominant, the application of a higher-order monotone convection scheme to the turbulence equations leads to results which are more accurate than those obtained using the first-order upwind scheme.
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  • 55
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 673-688 
    ISSN: 0271-2091
    Keywords: Navier-Stokes equations ; projection methods ; operator splitting ; spectral element methods ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: An approximate projection scheme based on the pressure correction method is proposed to solve the Navier-Stokes equations for incompressible flow. The algorithm is applied to the continuous equations; however, there are no problems concerning the choice of boundary conditions of the pressure step. The resulting velocity and pressure are consistent with the original system. For the spatial discretization a high-order spectral element method is chosen. The high-order accuracy allows the use of a diagonal mass matrix, resulting in a very efficient algorithm. The properties of the scheme are extensively tested by means of an analytical test example. The scheme is further validated by simulating the laminar flow over a backward-facing step.
    Additional Material: 6 Ill.
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  • 56
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    International Journal for Numerical Methods in Fluids 22 (1996) 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 57
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 755-770 
    ISSN: 0271-2091
    Keywords: Stokes ; multigrid ; Krylov subspace ; conjugate gradient ; conjugate residual ; Uzawa ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Discretization of the Stokes equations produces a symmetric indefinite system of linear equations. For stable discretizations a variety of numerical methods have been proposed that have rates of convergence independent of the mesh size used in the discretization. In this paper we compare the performance of four such methods, namely variants of the Uzawa, preconditioned conjugate gradient, preconditioned conjugate residual and multigrid methods, for solving several two-dimensional model problems. The results indicate that multigrid with smoothing based on incomplete factorization is more efficient than the other methods, but typically by no more than a factor of two. The conjugate residual method has the advantage of being independent of iteration parameters.
    Additional Material: 5 Ill.
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  • 58
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 799-810 
    ISSN: 0271-2091
    Keywords: jets ; jet impingement ; turbulence ; k-ε model ; finite volume method ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: This paper reports numerical modelling of impinging jet flows using Rodi and Malin corrections to the k-ε turbulence model, carried out using the PHOENICS finite volume code. Axisymmetric calculations were performed on single round free jets and impinging jets and the effects of pressure ratio, height and nozzle exit velocity profile were investigated numerically. It was found that both the Rodi and Malin corrections tend to improve the prediction of the hydrodynamic field of free and impinging jets but still leave significant errors in the predicted wall jet growth. These numerical experiments suggest that conditions before impingement significantly affect radial wall jet development, primarily by changing the wall jet's initial thickness.
    Additional Material: 11 Ill.
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  • 59
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 771-798 
    ISSN: 0271-2091
    Keywords: curved pipe flow ; variable cross-section ; secondary flow ; artery ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: This paper is concerned with steady, laminar flow of an incompressible Newtonian fluid in curved pipes of non-uniform cross-section. During the past decade a number of numerical solutions for flow in curved pipes have been obtained using progressively improved computational methods and technology; see e.g. Soh and Berger (Int. j. numer. methods fluids, 7, 733-755 (1987)) and Green et al. (Phil. Trans. R. Soc. Lond. A, 342, 543-572 (1993)) for relevant references. These results have been confined mainly to fully developed flow in pipes of constant cross-section. The present study deals with curved pipes of variable cross-section in which the velocity field is necessarily a function of the axial location along the pipe centreline in addition to the two cross-sectional co-ordinates. We use the finite difference method on a staggered grid with Newton's method to solve the Navier-Stokes equations. Results are calculated and presented for non-uniform pipe geometries with curvature ratios of 0ċ01 and 0ċ1. The velocity field for flow through curved pipes of non-uniform cross-section is compared with the corresponding results for flow through straight pipes of non-uniform radius and curved pipes of uniform radius, revealing important qualitative differences. The basic developments presented are applicable to a variety of flows in pipes, including those in arteries and piping systems.
    Additional Material: 14 Ill.
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  • 60
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 835-849 
    ISSN: 0271-2091
    Keywords: non-linear first-order hyperbolic system ; collocation method ; upwinding ; thermal pipeline simulation ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Simulating thermal effects in pipeline flow involves solving a coupled non-linear system of first-order hyperbolic equations. The advection term has two large eigenvalues of opposite signs, corresponding to the propagation of high-speed sound waves, and one eigenvalue close to or even equal to zero, representing the much slower fluid flow velocity, which transports temperature. Standard collocation methods work well for isothermal flow in pipelines, but the stagnating eigenvalue causes difficulties when thermal effects are included. In a companion paper we formulate and analyse a new numerical method for the non-linear system which arises in thermal modelling. The new method applies to general coupled systems of non-linear first-order hyperbolic partial differential equations with one degenerate eigenvalue. In the present paper we focus on a linearized constant coefficient form of the thermal flow equations. This substantially simplifies presentation of the error analysis for the numerical scheme. We also include numerical results for the method applied to the fully non-linear system. Both the error analysis and the numerical experiments show that the difficulties that come from the application of standard collocation can be overcome by using upwinded piecewise constant functions for the degenerate component of the solution.
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  • 61
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 881-897 
    ISSN: 0271-2091
    Keywords: turbine cascade flows ; vortex shedding (periodic flows) ; compressible viscous flows ; turbulence and transition ; boundary layers ; multiblock meshes ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Periodic vortex shedding at the trailing edge of a turbine cascade has been investigated numerically for a subsonic and a transonic cascade flow. The numerical investigation was carried out by a finite volume multiblock code, solving the 2D compressible Reynolds-averaged Navier-Stokes equations on a set of non-overlapping grid blocks that are connected in a conservative way. Comparisons are made with experimental results previously obtained by Sieverding and Heinemann.
    Additional Material: 14 Ill.
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  • 62
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 549-565 
    ISSN: 0271-2091
    Keywords: parallel computing ; multigrid method ; finite volume method ; block-structured grids ; incompressible flow ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: In this paper a parallel multigrid finite volume solver for the prediction of steady and unsteady flows in complex geometries is presented. For the handling of the complexity of the geometry and for the parallelization a unified approach connected with the concept of block-structured grids is employed. The parallel implementation is based on grid partitioning with automatic load balancing and follows the message-passing concept, ensuring a high degree of portability. A high numerical efficiency is obtained by a non-linear multigrid method with a pressure correction scheme as smoother.By a number of numerical experiments on various parallel computers the method is investigated with respect to its numerical and parallel efficiency. The results illustrate that the high performance of the underlying sequential multigrid algorithm can largely be retained in the parallel implementation and that the proposed method is well suited for solving complex flow problems on parallel computers with high efficiency.
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  • 63
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 581-601 
    ISSN: 0271-2091
    Keywords: unstructured grids ; incompressible viscous flow ; pressure-correction method ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: An unstructured grid, finite volume method is presented for the solution of two-dimensional viscous, incompressible flow. The method is based on the pressure-correction concept implemented on a semi-staggered grid. The computational procedure can handle cells of arbitrary shape, although solutions presented herein have been obtained only with meshes of triangular and quadrilateral cells. The discretization of the momentum equations is effected on dual cells surrounding the vertices of primary cells, while the pressure-correction equation applies to the primary-cell centroids and represents the conservation of mass across the primary cells. A special interpolation scheme s used to suppress pressure and velocity oscillations in cases where the semi-staggered arrangement does not ensure a sufficiently strong coupling between pressure and velocity to avoid such oscillations. Computational results presented for several viscous flows are shown to be in good agreement with analytical and experimental data reported in the open literature.
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  • 64
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 713-729 
    ISSN: 0271-2091
    Keywords: finite difference ; boundary conditions ; Navier-Stokes equations ; convergence analysis ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: A finite difference method for the Navier-Stokes equations in vorticity -streamfunction formulation is proposed to resolve the difficulty of the lack of a vorticity boundary condition at a no-slip boundary. It is particularly suitable for flows in regions with complicated geometries. Convergence with second-order accuracy in vorticity and velocity is established. In numerical experiments the convergence rates agree with theoretical predictions. Test results for the two-dimensional driven cavity problem and for the flow in expansion and contraction channels are given.
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  • 65
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 691-712 
    ISSN: 0271-2091
    Keywords: ELAFINT ; interface tracking ; solidification ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: In this work a mixed Eulerian-Lagrangian technique is devised, hereinafter abbreviated as ELAFINT (Eulerian-Lagrangian Algorithm For INterface Tracking). The method is capable of handling fluid flows in the presence of both irregularly shaped solid boundaries and moving/free phase boundaries. The position and shape of the boundary are tracked explicitly by the Lagrangian translation of marker particles. The field equations are solved on an underlying fixed grid as in Eulerian methods. The interface passes through the grid lay-out and details regarding the treatment of the cut cells so formed are provided. The issues involved in treating the internal boundaries are dealt with, with particular attention to conservation and consistency in the vicinity of the interface. The method is tested by comparing with solutions from well-tested body-fitted co-ordinate methods. Test cases pertaining to forced and natural convection in irregular geometries and moving phase boundaries with melt convection are presented. The capability developed here can be beneficial in solving difficult flow problems involving moving and geometrically complex boundaries.
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  • 66
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 149-150 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 67
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 867-879 
    ISSN: 0271-2091
    Keywords: optimal control ; optimization ; gas pipelines ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: A general optimal control approach employing the principles of calculus of variations has been developed to determine the best operating strategies for keeping the outlet pressure of gas transmission pipelines around a predetermined value while achieving reasonable energy consumption. The method exploits analytical tools of optimal control theory. A set of partial differential equations characterizing the dynamics of gas flow through a pipeline is directly used. The necessary conditions to minimize the specific performance index come from the infinite-dimensional model. The optimization scheme has been tested on a pipeline subject to stepwise change in demand.
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  • 68
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 915-917 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 69
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    International Journal for Numerical Methods in Fluids 22 (1996) 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 70
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 919-919 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 71
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 211-221 
    ISSN: 0271-2091
    Keywords: backward-facing step ; particle-laden flow ; Lagrangian tracking ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Particle-laden flows are calculated for a classical laminar backward- facing step problem. The particle tracks are calculated using a recently developed exponential Lagrangian tracking scheme. The behaviour of the particle-laden flow is considered for various inlet for Reynolds number, Stokes numbers and void fractions. Doping the flow with low-Stokes-number particles has the effect of increasing the inlet inertia of the flow and this increases the strength of the recirculation behind the step. High-Stokes- number particles are dominated by gravitational effects which affect the flow accordingly. Differences between the single-phase flow and the particle-laden flows are therefore dependent on the Stokes number and increase linearly with void fraction.
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  • 72
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 225-240 
    ISSN: 0271-2091
    Keywords: domain decomposition ; line Gauss-Seidel ; conjugate gradient ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: The numerical discretization of the equations governing fluid flow results in coupled, quasi-linear and non-symmetric systems. Various approaches exist for resolving the non-linearity and couplings. During each non-linear iteration, nominally linear systems are solved for each of the flow variables. Line relaxation techniques are traditionally employed for solving these systems. However, they could be very expensive for realistic applications and present serious synchronization problems in a distributed memory parallel environment. In this paper the discrete linear systems are solved using the generalized conjugate gradient method of Concus and Golub. The performance of this algorithm is compared with the line Gauss-Seidel algorithm for laminar recirculatory flow in uni- and multiprocessor environments. The uniprocessor performances of these algorithms are also compared with that of a popular iterative solver for non-symmetric systems (the GMRES algorithm).
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  • 73
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 283-296 
    ISSN: 0271-2091
    Keywords: laminar flow ; numerical modelling ; particle image velocimetry measurement ; rotating disc ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: The fluid flow field within an enclosed cylindrical chamber with a rotating flat disc was calculated using a finite volume computational fluid dynamics (CFD) model and compared with particle image velocimetry (PIV) measurements. Two particular laminar cases near the Transitional flow regime were investigated: Reynolds number Re=2.5×1 4, chamber aspect ratio G (h/Rd)=0.2 and Re=4.2×104, G (h/Rd)=0.217. This enabled direct comparison with the numerical and experimental results reported by other researchers. The computational details and some major factors that affect the computed accuracy and convergence speed are also discussed in detail. PIV results containing some 4300 velocity vector points in each of seven planes for each case were obtained from the flow field parallel to the rotating disc. It was found that PIV results could be obtained in planes within the boundary layers as well as the core flow by careful use of a thin laser illumination sheet and correct choice of laser pulse separation. There was close agreement between numerical results, the present PIV measurements and other reported experimental and numerical results.
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  • 74
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    International Journal for Numerical Methods in Fluids 22 (1996) 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Type of Medium: Electronic Resource
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  • 75
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 297-311 
    ISSN: 0271-2091
    Keywords: large-eddy simulation ; numerical schemes ; mixing layer ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: A posteriori tests of large-eddy simulations for the temporal mixing layer are performed using a variety of numerical methods in conjunction with the dynamic mixed subgrid model for the turbulent stress tensor. The results of the large-eddy simulations are compared with filtered direct numerical simulation (DNS) results. Five numerical methods are considered. The cell vertex scheme (A) is a weighted second-order central difference. The transverse weighting is shown to be necessary, since the standard second-order central difference (A′) gives rise to instabilities. By analogy, a new weighted fourth-order central difference (B) is constructed in order to overcome the instability in simulations with the standard fourth-order central method (B′). Furthermore, a spectral scheme (C) is tested. Simulations using these schemes have been performed for the case where the filter width equals the grid size (I) and the case where the filter width equals twice the grid size (II). The filtered DNS results are best approximated in case II for each of the numerical methods A, B and C. The deviations from the filtered DNS data are decomposed into modelling error effects and discretization error effects. In case I the absolute modelling error effects are smaller than in case II owing to the smaller filter width, whereas the discretization error effects are larger, since the flow field contains more small-scale contributions. In case I scheme A is preferred over scheme B, whereas in case II the situation is the reverse. In both cases the spectral scheme C provides the most accurate results but at the expense of a considerably increased computational cost. For the prediction of some quantities the discretization errors are observed to eliminate the modelling errors to some extent and give rise to reduced total errors.
    Additional Material: 3 Ill.
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  • 76
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 375-392 
    ISSN: 0271-2091
    Keywords: gates ; finite elements ; potential flow ; free surface ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Two-dimensional finite element analyses of two types of gate - (i) a conduit gate with pressure flow upstream of the gate and free surface flow downstream of the gate and (ii) a sluice gate with free surfaces both upstream and downstream of the gate - are done using ideal fluid theory. The conduit gate problem is solved using both Φ- and Ψ- formulations. Various methods of satisfying the boundary conditions were tested for both formulations. The ψ-formulation developed in the present study is found to converge faster for flows with Froude numbers less than 4, which are common in sluice gates. The results obtained from the present study are compared with results from analytical and experimental techniques available in the literature. The ψ-formulation developed in the present study is then used to solve the spillway gate problem, for which no analytical solution is available.
    Additional Material: 14 Ill.
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  • 77
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 411-428 
    ISSN: 0271-2091
    Keywords: composite grids ; adaptive grids ; multigrid parallelization ; Euler ; implicit scheme ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: A method capable of solving very fast and robust complex non-linear systems of equations is presented. The block adaptive multigrid (BAM) method combines mesh adaptive techniques with multigrid and domain decomposition methods. The overall method is based on the FAS multigrid, but instead of using global grids, locally enriched subgrids are also employed in regions where excessive solution errors are encountered. The final mesh is a composite grid with uniform rectangular subgrids of various mesh densities. The regions where finer grid resolution is necessary are detected using an estimation of the solution error by comparing solutions between grid levels. Furthermore, an alternative domain decomposition strategy has been developed to take advantage of parallel computing machines. The proposed method has been applied to an implicit upwind Euler code (EuFlex) for the solution of complex transonic flows around aerofoils. The efficiency and robustness of the BAM method are demonstrated for two popular inviscid test cases. Up to 19-fold acceleration with respect to the single-grid solution has been achieved, but a further twofold speed-up is possible on four-processor parallel computers.
    Additional Material: 12 Ill.
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  • 78
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 449-465 
    ISSN: 0271-2091
    Keywords: aeroacoustic ; vortex shedding ; solid rocket motor ; implicit or explicit method ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: The present work is devoted to the numerical simulation of two important phenomena in the field of solid propellant rocket motors: the first is acoustic boundary layers that develop above the burning propellant; the other is a periodic vortex-shedding phenomenon which is the result of a strong coupling between the instability of mean flow shear layers and acoustic motions in the chamber. To predict the acoustic boundary layer, computations were performed for the lower half of a rectangular chamber with bottom-side injection. The outflow pressure is sinusoidally perturbed at a given frequency. For the highest CFL numbers the implicit scheme is not able to compute the unsteadiness in the acoustic boundary layer. With very low CFL numbers or with the explicit scheme the main features of the acoustic field are captured. To simulate the vortex-shedding mechanismin a segmented solid rocket motor, the explicit version is used. This computation shows a mechanism for ‘self-excited’ vortex shedding close to the second axial mode frequency. The use of the flux-splitting technique reduces substantially the amplitude of the oscillations. A few iterations are done with flux splitting, then the computation is performed without this technique. In this case both the frequency and the intensity are well predicted. A geometry more representative of the solid rocket motor is also computed. In this case the vortex-shedding process is more complex and pairing is observed.
    Additional Material: 12 Ill.
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  • 79
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    International Journal for Numerical Methods in Fluids 22 (1996) 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 80
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 307-308 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 81
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 569-580 
    ISSN: 0271-2091
    Keywords: magnetohydrodynamics ; Godunov ; upwind ; conservative ; plasma ; fusion ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: In this paper a higher-order Godunov method for one-dimensional solutions of the ideal MHD (magneto-hydrodynamics) equations is presented. The method uses a fluctuation approach and includes a new sonic fix and a new Roe averaging. After a short introduction the MHD equations in conservative form are given. The flux is rearranged such that the eigenstructure is not changed. This rearrangement allows full Roe averaging for any value of adiabatic index (contrary to Brio and Wu's conclusion). A new procedure to get Roe - averaged MHD fields at the interfaces between left and right states is then presented and some useful identities are given. Next the second-order-limited fluctuation approach is presented in full detail. The new sonic fix for MHD and the procedure for applying this fix to the sonic points are then given in detail. Numerical results obtained with the described method are presented. Finally, conclusions are given.
    Additional Material: 4 Ill.
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  • 82
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    Chichester : Wiley-Blackwell
    International Journal for Numerical Methods in Fluids 23 (1996) 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 83
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 397-411 
    ISSN: 0271-2091
    Keywords: GMRES ; mild slope equation ; iterative solvers ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: The mild slope equation in its linear and non-linear forms is used for the modelling of nearshore wave propagation. The finite difference method is used to descretize the governing elliptic equations and the resulting system of equations is solved using GMRES-based iterative method. The original GMRES solution technique of Saad and Schultz is not directly applicable to the present case owing to the complex coefficient matrix. The simpler GMRES algorithm of Walker and Zhou is used as the core solver, making the upper Hessenberg factorization unneccessary when solving the least squares problem. Several preconditioning-based acceleration strategies are tested and the results show that the GMRES-based iteration scheme performs very well and leads to monotonic convergence for all the test-cases considered.
    Additional Material: 10 Ill.
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  • 84
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 455-466 
    ISSN: 0271-2091
    Keywords: computational fluid dynamics ; unsteady incompressible flow ; method of lines ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: A novel approach to the development of a code for the solution of the time-dependent two-dimensional Navier-Stokes equations is described. The code involves coupling between the method of lines (MOL) for the solution of partial differential equations and a parabolic algorithm which removes the necessity of iterative solution on pressure and solution of a Poisson-type equation for the pressure. The code is applied to a test problem involving the solution of transient laminar flow in a short pipe for an incompressible Newtonian fluid. Comparisons show that the MOL solutions are in good agreement with the previously reported values. The proposed method described in this paper demonstrates the ease with which the Navier-Stokes equations can be solved in an accurate manner using sophisticated numerical algorithms for the solution of ordinary differential equations (ODEs).
    Additional Material: 5 Ill.
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  • 85
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 485-501 
    ISSN: 0271-2091
    Keywords: shallow recirculating flow ; multilayer model ; turbulence model ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: A quasi-three-dimensional multilayer k- ∊ model has been developed to simulate turbulent recirculating flows behind a sudden expansion in shallow waters. The model accounts for the vertical variation in the flow quantities and eliminates the problem of closure for the effective stresses resulting from the depth integration of the non-linear convective accelerations found in the widely used depth- integrated models. The governing equations are split into three parts in the finite difference solution: advection, dispersion and propagation. The advection part is solved using the four-node minimax-characteristics method. The dispersion and propagation parts are treated by the central difference method, the former being solved explicitly and the latter implicitly using the Gauss-Seidel iteration method. The relative effect of bed-generated turbulence and transverse shear-generated turbulence on the recirculating flow has been studied in detail. In comparison with the results computed by the depth-integrated k-∊ model, the results computed by the present model are found to be closer to the reported data.
    Additional Material: 12 Ill.
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  • 86
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 861-863 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 87
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 811-813 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Type of Medium: Electronic Resource
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  • 88
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 815-834 
    ISSN: 0271-2091
    Keywords: vertical discretization ; sigma co-ordinates ; localized sigma co-ordinates ; tidal flow ; numerical experimentation ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: We propose an empirical law for vertical nodal placement in tidal simulations that depends on a single parameter p. The influence of dimensionless numbers on the optimal value of pis analysed through a series of numerical experiments for an individual vertical and a single value of pis found to be adequate for all cases. The proposed law can lead to gains in accuracy of over two orders of magnitude relative to a uniform grid and compares favourably with non-uniform grids previously used in the literature. In practical applications the most effective use of this law may require each vertical to have a different number of nodes. Criteria for the distribution of the total number of nodes among different verticals are also proposed, based on the concept of equalizing errors across the domain. The usefulness of the overall approach is demonstrated through a two-dimensional laterally averaged application to a synthetic estuary.
    Additional Material: 15 Ill.
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  • 89
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 851-865 
    ISSN: 0271-2091
    Keywords: surface tension ; free boundary ; moving boundary ; implied algorithm ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: One of the methods for solving a free or moving boundary problem is the use of Picard solvers which solve the geometry and the velocity field successively. When, however, the kinematic condition is used for updating the geometry in this technique, numerical stability problems occur for surface-tension-dominated flow. These problems are shown here to originate from the unstable integration of the local smoothing of the surface by surface tension. By an extension of the surface tension contribution to the flow field an implicit treatment of surface tension is obtained which overcomes these stability problems. The algorithm is applicable to both free and moving boundary problems, as will be shown by examples in this paper.
    Additional Material: 7 Ill.
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  • 90
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 899-913 
    ISSN: 0271-2091
    Keywords: grid generation ; tri-tree ; unstructured grid ; finite elements ; mixed formulation ; analytic integration ; adaptive solver ; Stokes equations ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: An iterative adaptive equation solver for solving the implicit Stokes equations simultaneously with tri-tree grid generation is developed. The tri-tree grid generator builds a hierarchical grid structure which is mapped to a finite element grid at each hierarchical level. For each hierarchical finite element grid the Stokes equations are solved. The approximate solution at each level is projected onto the next finer grid and used as a start vector for the iterative equation solver at the finer level. When the finest grid is reached, the equation solver is iterated until a tolerated solution is reached.In order to reduce the overall work, the element matrices are integrated analytically beforehand. The efficiency and behaviour of the present adaptive method are compared with those of the previously developed iterative equation solver which is preconditioned by incomplete LU factorization with coupled node fill-in.The efficiency of the incomplete coupled node fill-in preconditioner is shown to be largely dependent on the global node numbering. The preconditioner is therefore tested for the natural node ordering of the tri-tree grid generator and for different ways of sorting the nodes.
    Additional Material: 7 Ill.
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  • 91
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    International Journal for Numerical Methods in Fluids 22 (1996), S. 921-935 
    ISSN: 0271-2091
    Keywords: two-phase flow ; multilevel ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: A time-dependent numerical algorithm is developed for the two-fluid model Euler of TLNS (thin layer Navier-Stokes) equations. The analysis is based on a MUSCL (monotone upstream central scheme for conservation laws)-type flux-vector-splitting scheme with the multi-level technique. This algorithm is applied to investigate JPL (Jet Propulsion Laboratory) nozzle flow. Calculated results for both one- and two-phase flows are given to show the accuracy, the computational efficiency and the particle influence on the flow field.
    Additional Material: 15 Ill.
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  • 92
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 1133-1144 
    ISSN: 0271-2091
    Keywords: turbulence models ; realizability ; complex flows ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Various wall-bounded flows with complex geometries and free shear flows have been studied with a newly developed realizable Reynolds stress algebraic equation model. The model development is based on the invariant theory in continuum mechanics. This theory enables us to formulate a general constitutive relation for the Reynolds stresses. Pope (J. Fluid Mech., 72, 331-340 (1975)) was the first to introduce this kind of constitutive relation to turbulence modelling. In our study, realizability is imposed on the truncated constitutive relation to determine the coefficients so that, unlike the standard k-∊ eddy viscosity model, the present model will not produce negative normal stresses in any situations of rapid distortion. The calculations based on the present model have shown encouraging success in modelling complex turbulent flows.
    Additional Material: 15 Ill.
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  • 93
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 1197-1210 
    ISSN: 0271-2091
    Keywords: finite element method ; gust ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: In the structural design of civil aircraft the critical loads are often those encountered in a gust or atmospheric turbulence. The traditional ‘indicial’ solution is restricted to a simple plate. In this paper a finite element formulation is proposed for an aerofoil or arbitrary shape entering a uniform sharp-edged or sinusoidal gust. The thin rotational gust front and wake in an irrotational flow field are successfully modelled by a novel superposition technique. The finite element solutions are compared with the Kussner function and results by other numerical methods. The agreement is good.
    Additional Material: 16 Ill.
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  • 94
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 1235-1235 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Type of Medium: Electronic Resource
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  • 95
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 1275-1287 
    ISSN: 0271-2091
    Keywords: Dean vortices ; system rotation ; Eckhaus instability ; centrifugal and coriolis forces ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Three-dimensional spatially developing Navier-Stokes calculations are carried out to simulate the flow in a curved, rotating channel. The competition between centrifugal and Coriolis forces, expressed by the ratio of the Dean number to the rotation number, gives rise to a variety of possible instability modes characterized by the presence of streamwise vortices. Cases in which the force produced by system rotation enhances or opposes the centrifugal force are treated and the effect on the ensuing instability are analysed. Evidence for a generalized Eckhaus instability of rotating Dean vortices is presented.
    Additional Material: 10 Ill.
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  • 96
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 1241-1262 
    ISSN: 0271-2091
    Keywords: axisymmetric flow ; vortex method ; laminar flow ; entrance length ; steady and oscillating flows ; Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Steady and oscillating axisymmetric tube flows are modelled using a vorticity transport algorithm. The axisymmetric convective -diffusive Navier-Stokes equations are solved using a splitting technique. Axisymmetric ring vortex filaments are introduced on the walls and subsequently convected and diffused throughout the flow field. An axisymmetric equation similar to the Oseen diffusion equation is used to diffuse the ring vortex filaments. Vorticity is reflected from the tube walls using two techniques. Results are presented for the developing Poiseuille flow and for the developed flow in the form of the entrance length and the axial velocity and vorticity profiles. Good agreement is achieved with a finite difference method in the developing region of Poiseuille flow. The developed flow results are compared with the analytical solutions. The developed profiles of velocity and vorticity have errors of less than 0ċ3 per cent for both methods of dealing with reflection of diffusion at the bounding surfaces and similar accuracy is obtained for the velocity profiles in oscillating flow except at the wall. Oscillating flow is produced with a discretized sinusoidal piston motion. Velocity profiles, boundary layer thickness and entrance length are presented for oscillating flow. Good agreement is achieved for low-Womersley-number non-dimensional frequency. At higher values of this parameter, flows are inaccurately simulated, because the number of piston positions used to discretize the piston motion is inversely proportional to the non-dimensional frequency.
    Additional Material: 19 Ill.
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  • 97
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    International Journal for Numerical Methods in Fluids 23 (1996), S. 1347-1347 
    ISSN: 0271-2091
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Type of Medium: Electronic Resource
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  • 98
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
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  • 99
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
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  • 100
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    New York, NY : Wiley-Blackwell
    BioEssays 18 (1996) 
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Type of Medium: Electronic Resource
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