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  • 1990-1994  (587)
  • 1991  (587)
  • Computational Chemistry and Molecular Modeling  (394)
  • Genetics  (192)
  • Nuclear reactions
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 81 (1991), S. 50-58 
    ISSN: 1432-2242
    Keywords: Vicia faba ; Legumin ; Vicilin ; Structure ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Legumin and vicilin were purified from seeds of Vicia faba L. var. Scuro, characterized in different electrophoretic systems, and used to produce polyclonal antibodies in rabbits. Two-dimensional electrophoretic studies showed a wide range of heterogeneity in the subunits of both legumin and vicilin. Legumin was found to be composed of 29 disulphide-linked subunit pairs with different molecular weight and/or isoelectric point. Western blot analysis of legumin of several mutants revealed molecular polymorphism based on a corresponding gene family. Three different α-major legumin patterns were found, and inheritance studies showed that the 34.3-kD legumin polypeptide is the product of one locus, Lg-1α, which is the first legumin genetic locus described in Vicia faba. Vicilin was found to be composed of as many as 59 subunits distributed in a molecular weight range of 65.7 to 42.8 kD (major polypeptides) and 37.2 to 15.2 kD (minor polypeptides), with different isoelectric points. A model is proposed that explains the possible formation of the minor subunits and the major subunits of 48.2 and 46 kD molecular weight (MW) from proteolytic cleavages and/or glycosilation of precursor polypeptides. Ten different vicilin electrophoretic patterns were observed among the analyzed accessions, which showed large molecular polymorphism that proved to be under genetic control.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 82 (1991), S. 761-764 
    ISSN: 1432-2242
    Keywords: Rye ; Male sterility ; Genetics ; Gene location ; Trisomies
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The genetics and relationships between the genes in rye located in the nucleus and cytoplasm of the male sterility of the G-type were investigated. A factor inducing male sterility was found in the cytoplasms or rye cv Schlägler alt and rye cv Norddeutscher Champagner. Monogenic inheritance was observed in linkage tests. Using primary trisomies of rye cv Esto, the nuclear gene ms1 was found to be located on chromosome 4R. Modifying genes, probably masked in normal cytoplasm but expressed in male-sterility-inducing cytoplasm together with gene ms1, were located on chromosomes 3R (ms2) and 6R (ms3). Mono-, di-, and trigenic inheritance types were found in backcross progenies of trisomies.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Oecologia 86 (1991), S. 243-250 
    ISSN: 1432-1939
    Keywords: Daphnia ; Life-history ; Genetics ; Variation ; Maturation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Life-history traits of 101 clones from two populations of Daphnia magna were measured under controlled environmental conditions in the laboratory. Some individuals had four juvenile instars, others had five. This depended on their length at birth and on the population they came from. Females in the group with five juvenile instars were smaller at birth but larger and older at maturity than those with four juvenile instars. Within groups of females with equal numbers of preadult instars (instar groups) age and size at maturity increased with size at birth. This relationship differed significantly among instar groups for both age and size at maturity. Significant differences in age and size at maturity between two populations became non-significant when size at birth was used as a covariable in AN-COVA. Within populations, size at birth depended on the clone and on the parity of the clutch. First-clutch offspring were considerably smaller than those from later clutches. The results suggest that variability in life-history traits is common within and between clones, but that most of this variation can be accounted for by size at birth and the number of pre-adult instars.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    The astronomy and astrophysics review 3 (1991), S. 1-46 
    ISSN: 1432-0754
    Keywords: Nucleosynthesis ; Nuclear reactions ; Stars: abundances ; Interstellar Medium: abundances ; Cosmology ; Galaxies: evolution of
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Summary The basic scheme of nucleosynthesis (building of heavy elements from light ones) has held up very well since it was first proposed more than 30 years ago by E.M. Burbidge, G.R. Burbidge, A.G.W. Cameron, W.A. Fowler, and F. Hoyle. Significant advances in the intervening years include (a) observations of elemental and a few isotopic ratios in many more extrasolar-system sites, including metal-poor dwarf irregular galaxies, where very little has happened, and supernovae and their remnants, where a great deal has happened, (b) recognition of the early universe as good for making all the elements up to helium, (c) resolution of heavy element burning in stars into separate carbon, neon, oxygen, and silicon burning, with fine tuning of the resulting abundances by explosive nucleosynthesis in outgoing supernova shock waves, (d) clarification of the role of Type I supernovae, (e) concordance between elements produced in short-lived and long-lived stars with those that increased quickly and slowly over the history of the galaxy, and (f) calibration of calculations of the evolution and explosion of massive stars against the detailed observations of SN 1987A. The discussion presupposes a reader (a) with some prior knowledge of astronomy at the level of recognizing what is meant by an A star and an AGB star and (b) with at least a mild interest in how we got to where we currently are.
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  • 5
    ISSN: 1432-0428
    Keywords: Genetics ; diabetes mellitus ; restriction fragment length polymorphism ; glucose-transport ; familial
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Patients with Type 2 (non-insulin-dependent) diabetes mellitus and a strong family history of the disease may represent a sub-group where genetic factors play a pree-minent role in transmission of the disease. A defect in the liver/islet cell glucose transporter (GluT 2) could explain many of the pathophysiological features of the disease. In order to test the hypothesis that genetic variation at the GluT 2 locus contributes genetic susceptibility to Type 2 diabetes, 60 unrelated Caucasian diabetic patients with at least one affected sibling were genotyped for a Taq 1 restriction fragment length polymorphism marker. Hybridisation with a cDNA GluT 2 probe identified two alleles of sizes 13 kilobase (T1) and 19 kilobase (T2). The allele frequencies in the diabetic group with a family history were significantly different from those in a racially-matched control population of 122 subjects with no personal or family history of the disease (diabetic patients T1=0.96, T2=0.04, control subjects T1=0.89, T2=0.11, p〈 0.03). However, when the study was repeated with 54 diabetic patients with indeterminate family history, statistical significance was not reached although the allele frequencies showed a similar trend. The findings of this study support the hypothesis that a genetic variant of the liver/islet cell glucose transporter may contribute to familial susceptibility in Type 2 diabetes.
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  • 6
    ISSN: 1432-072X
    Keywords: Carboxydotrophic bacteria ; Ribulosebis-phosphate carboxylase ; Phosphoribulokinase ; Hybridization ; Plasmids ; Genetics ; CO2 fixation ; Alcaligenes eutrophus ; Pseudomonas carboxydovorans ; Rhodospirillum rubrum
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Heterologous gene probes derived from cfxLp and cfxPp genes of Alcaligenes eutrophus H16 revealed the presence of structural genes encoding ribulosebisphosphate carboxylase (Rubisco) and phosphoribulokinase (PRK) on the genome of carboxydotrophic bacteria. The two genes were found to be rather conserved. In Pseudomonas carboxydovorans OM5 cfx genes reside on the plasmid pHCG3 and the chromosome as well, indicating that they are duplicated. Also in all plasmidharboring carboxydotrophic bacteria cfxL and cfxP structural genes were found to be plasmid-coded. Our results extend the list of carboxydotrophy structural genes residing on the plasmid pHCG3 and strongly support the idea that the components essential for the chemolithoautotrophic utilization of CO by Pseudomonas carboxydovorans OM5 are plasmid-coded. A cfxL gene probe from Rhodospirillum rubrum did not detectably hybridize with DNA from any of the carboxydotrophic bacteria examined.
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Annals of hematology 62 (1991), S. 188-189 
    ISSN: 1432-0584
    Keywords: Hemochromatosis ; Pyruvate kinase deficiency ; Hereditary anemia ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Hemochromatosis has been reported in several patients with chronic hemolytic anemia due to pyruvate kinase deficiency. We describe here a further patient with such an association and review the literature on the subject. We hypothesize that iron overload may occur in patients with pyruvate kinase deficiency who are also carriers of the hereditary hemochromatosis gene.
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  • 8
    ISSN: 1432-0428
    Keywords: Genetics ; Type 1 (insulin-dependent) diabetes mellitus ; Type 2 (non-insulin-dependent) diabetes mellitus ; HLA ; haptoglobin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Epidemiologic data suggest that having a parent with Type 2 (non-insulin-dependent) diabetes mellitus increases the risk for Type 1 (insulin-dependent) diabetes in siblings of a Type 1 diabetes proband. This increase in risk is consistent with a shared genetic susceptibility between Type 1 diabetes and Type 2 diabetes. We contrast genetic risk factors in three sets of families, consisting of (1) a single Type 1 diabetic child (proband) and non-diabetic parents, (2) multiple Type 1 diabetic siblings and non-diabetic parents, and (3) at least one Type 1 diabetic child and at least one Type 2 diabetic parent. Previous studies have demonstrated that HLA region genes, which elevate the risk in Type 1 diabetes, have no significant effect with respect to the risk for developing Type 2 diabetes. An earlier report cited a contribution by the haptoglobin locus to genetic susceptibility for Type 2 diabetes. We provide evidence that a high risk HLA antigen (HLA-DR3) is decreased to a greater extent in Type 1 patients with a Type 2 parent than in Type 1 patients in which the parents are not diabetic. The role of HLA-DR4 is maintained in these families, with an unexpectedly significant increased rate of transmission of the HLA-DR4 allele from Type 2 parent to Type 1 offspring. The role of haptoglobin in these families does not appear to be important, either with respect to association with diabetes or with respect to linkage with a secondary susceptibility locus. These results indicate that families with a Type 2 parent and Type 1 child, heavily determined by HLA-DR4 linked factors, may represent a homogeneous subset of diabetes susceptibility.
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 83 (1991), S. 24-32 
    ISSN: 1432-2242
    Keywords: Genetics ; Growth curve ; Body weight ; Chickens
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Genetic improvement in growth of poultry has traditionally proceeded via selection for body weight at a fixed age. Due to increased maintenance costs and reproductive problems of adult broiler breeders, the potential for genetic manipulation of the growth curve has been receiving increased interest. Research of both male and female progeny of a three-way diallel cross was used to investigate the inheritance of growth curve parameters. The Laird form of the Gompertz equation was used to determine growth curve parameters, and was suited to the juvenile growth data frequently collected from meat-type chickens. Growth rate exhibited significant heterosis due to both autosomes and the sex chromosomes. Age at inflection point also exhibited significant average heterosis, though only among females. Growth rate was also influenced by average line effects, as was age at inflection point. Maternal effects had no influence on growth curve parameters, while additive sex linkage was observed for growth rate. Phenotypic and genetic correlations were calculated among the growth curve parameters and suggest that specific breeding programs could alter the growth trajectory of the contemporary broiler chicken. Moderate heritabilities were observed for the growth curve parameters and support the hypothesis that the growth curve could be altered via genetic manipulation of early postnatal growth, especially during the first 14 days post-hatch.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 82 (1991), S. 771-776 
    ISSN: 1432-2242
    Keywords: Secale cereale ; RFLP ; α-Amylase ; Genetics ; Isozymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Rye α-Amy1, α-Amy2, and α-Amy3 genes were studied in the cross between inbred lines using wheat α-amylase cDNA probes. The α-Amy1 and α-Amy2 probes uncovered considerable restriction fragment length polymorphism, whereas the α-Amy3 region was much more conserved. The numbers of restriction fragments found and the F2 segregation data suggest that there are three α-Amy1 genes, two or three α-Amy2 genes, and three α-Amy3 genes in rye. These conclusions were supported by a simultaneous study of α-amylase isozyme polymorphism. The F2 data showed the three individual α-Amy1 genes to span a distance of 3cM at the locus on chromosome 6RL. The genes were mapped relative to other RFLP markers on 6RL. On chromosome 7RL two α-Amy2 genes were shown to be separated by 5 cM. Linkage data within α-Amy3 on 5RL were not obtained since RFLP could be detected at only one of the genes.
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  • 11
    Electronic Resource
    Electronic Resource
    Springer
    Psychopharmacology 104 (1991), S. 17-21 
    ISSN: 1432-2072
    Keywords: MK-801 ; Phencyclidine ; Ketamine ; CGP 39551 ; CGS 19755 ; NPC 12626 ; Locomotor activity ; Genetics ; NMDA/glutamate receptor complex ; Mice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The effects of non-competitive (MK-801, phencyclidine, and ketamine) and competitive (CGP 39551, CGS 19755, and NPC 12626) N-methyl-d-aspartate (NMDA) receptor antagonists on locomotor activity in inbred CBA and C57, and in outbred NMRI mice were examined. Administration of the non-competitive NMDA antagonists produced a dose-dependent increase in well-coordinated locomotor activity at lower doses, followed by a bizarre behavioral syndrome (head weaving, body rolling, rotations, ataxia) after higher doses. The pharmacological profile of the competitive antagonists CGP 39551, CGS 19755, and NPC 12626 was more complex. CGP 39551 dose-dependently inhibited locomotor activity, whereas CGS 19755 and NPC 12626 displayed a biphasic action, that is low doses inhibited locomotor activity, whereas higher doses produced mild behavioral stimulation. The behavioral effects of NMDA antagonists appear to be genetically determined, since CBA animals were most sensitive to both noncompetitive and competitive antagonists, followed by NMRI and C57 animals. The differential effects of NMDA antagonists in various strains of mice suggest that the observed behavioral differences may be due to genetic differences in the NMDA/glutamate receptor channel complex.
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  • 12
    ISSN: 1432-2072
    Keywords: Habituation ; GABA ; Ethanol sensitivity ; Ethanol tolerance ; Genetics ; Mice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Habituation to a test environment following daily exposure for 5 days was examined in three genetically different strains of mice. C57 animals showed significant habituation to the new environment already on the second day. The habituation of NMRI mice was significant on the third day, whereas CBA mice showed no habituation at all during the experimental period. There was no difference between the animal strains in learning capacity in a passive avoidance test, but CBA mice displayed a significant increase in latency in their performance. When tested for sensitivity to the convulsant actions of GABAergic antagonists, picrotoxin produced seizures at lower doses in CBA as compared to NMRI and C57 mice, whereas there was no difference between the strains in the seizure activity produced by the specific GABA receptor antagonist bicuculline. When the animals were tested for sensitivity to ethanol in a horizontal wire test, ethanol (2 g/kg, IP) produced muscle relaxation in CBA mice whereas the performance of NMRI and C57 was not affected. A large dose of ethanol (4 g/kg, IP) produced a significantly longer sleeping time in CBA mice as compared to NMRI and C57 animals. Ethanol-produced hypothermia was, however, similar in all animals. Environment-dependent development of tolerance to ethanol following daily injections of ethanol for 4 days was examined. C57 mice showed the most rapid development of tolerance towards ethanol's hypnotic actions, whereas CBA mice showed no tolerance to this effect of ethanol. No difference between the strains to the development of tolerance to ethanol's hypothermic effects was observed. The present findings indicate that sensitivity to ethanol and ethanol tolerance are complex phenomena which cannot be adequately characterized by measuring only one single functional response to ethanol. The possibility that a genetically determined perturbation in the functions of the GABA receptor-coupled chloride channel, noted as variable sensitivity to picrotoxin, may be of importance for the observed disturbance in habituation to a new environment, for the different sensitivity to ethanol, and for the different rate of development of ethanol tolerance is discussed.
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  • 13
    Electronic Resource
    Electronic Resource
    Springer
    Entomologia experimentalis et applicata 60 (1991), S. 173-182 
    ISSN: 1570-7458
    Keywords: Genetics ; evolution ; host adaptation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract When populations are exposed to different environments, evolutionary processes can lead either to genetically differentiated strains or to the appearance of increased generalism at the individual level. For evolution to occur, genetic variability in performance in different environments is required. Here, intraspecific genetic variation across environments was estimated in the flour beetle Tribolium castaneum (Herbst) by comparing the responses of two strains of T. castaneum to different flour types. Replicated groups from each strain were allowed to develop on either the standard whole wheat medium or on one of four novel flours (wheat, rice, corn and oat). In several of the novel flours, clear differences in mean development time or population size of one or both strains were seen relative to performance in the standard medium. Moreover, the strains differed significantly in their phenotypic responses to the flours. One strain did particularly poorly on oat flour. Reduced oviposition, reduced larval survivorship and increased larval cannibalism were examined as possible causes of the low productivity on oat flour. These three factors accounted for about 70% of the reduction in population size when this strain oviposited and developed in oat flour. The difference between these two outbred strains in response to these five flours suggests that genetic variation in resource use is present within T. castaneum and may also be present within strains and natural populations in grain storage facilities. Such variation would permit an evolutionary response to selection in multiple environments (flours). This process has agricultural implications when several types of grain are stored in a single location because it could eventually lead to the evolution of highly generalized populations of T. castaneum, an important pest of stored products.
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  • 14
    ISSN: 1572-8773
    Keywords: Iron transport ; Siderophores ; Pseudomonas putida ; Genetics ; Receptors
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Summary Root-colonizingPseudomonas putida WCS358 enhances growth of potato in part by producing under iron-limiting conditions a yellow-green, fluorescent siderophore designated pseudobactin 358. This siderophore efficiently complexes iron(III) in the rhizosphere, making it less available to certain endemic microorganisms, including phytopathogens, thus inhibiting their growth. At least 15 genes distributed over five gene clusters are required for the biosynthesis of pseudobactin 358. High-affinity iron(III) transport in strain WCS358 is initiated by an 86-kDa outer membrane receptor protein (PupA) which appears to be specific for ferric pseudobactin 358. PupA shares strong similarity with TonB-dependent receptor proteins ofEscherichia coli, which suggests a TonB-like protein in strain WCS358 is required for iron(III) transport. Strain WCS358 possesses a second uptake system for ferric pseudobactin 358 and structurally diverse ferric siderophores produced by other microorganisms. A second receptor gene (pupB) responsible for iron transport from pseudobactin BN7 or pseudobactin BN8 has been identified. The production of this and certain other ferric siderophore receptor proteins requires that strain WCS358 be grown in the presence of these siderophores. An apparent regulatory gene required for the expression ofpupB is located adjacent topupB. Two positive regulatory genes have been identified which can independently activate, under low-iron(III) conditions, transcription of genes coding for the biosynthesis of pseudobactin 358.
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  • 15
    ISSN: 1437-160X
    Keywords: Immunoglobulin allotypes ; Systemic lupus erythematosus ; Genetics ; Gm ; Km ; HLA-antigens ; Autoantibodies ; Clinical symptoms
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Immunoglobulin heavy chain (G1m, G2m, G3m, A2m) and kappa light chain (Km) allotype and phenotype frequencies of 323 central European Caucasian patients with systemic lupus erythematosus (SLE) were examined and correlated with various genetic, serologic and clinical markers of SLE. No significant associations were found between immunoglobulin allotypes or phenotypes and all 20 parameters tested (nephritis, vasculitis, arthralgias, photosensitivity, discoid lesions, central nervous system disease, Raynaud's phenomenon, sex, anti-Ro, anti-La, anti-nRNP, HLA-DR1-DR7, HLA phenotypes B8-DR3, B7-DR2). It could therefore be assumed that Gm, A2m and Km allotypes were not associated with HLA-antigens and had no influence on the serologic and clinical expression of SLE.
    Type of Medium: Electronic Resource
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  • 16
    Electronic Resource
    Electronic Resource
    Springer
    European journal of epidemiology 7 (1991), S. 490-493 
    ISSN: 1573-7284
    Keywords: Creutzfeldt-Jakob diseases ; Prion disease ; Jews ; Libya ; Genetics ; Pathophysiology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The focus of CJD among Jews of Libyan origin has been recognized for two decades, but the reasons underlying it were unknown. Prevailing views suggested transmission from sheep infected with scrapie. However, recent data show that in fact CJD in this ethnic group is a genetically determined disease due to a point mutation on the codon 200 of the prion protein gene. The clinical characteristics of CJD in this group, and particularly the less common periodic activity in the EEG, are reviewed. New findings include peripheral neuropathy of the demyelinating type in two cases, presumably due to involvement of Schwann cells. The pathophysiology of the disease includes, presumably, a focal post-translational modification of the prion protein, (predisposed by the mutation). Later, the disease progresses through cell-to-cell transmission.
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  • 17
    ISSN: 1573-6903
    Keywords: Genetics ; catecholamine ; brain ; imprinting ; development
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract This study was designed to compare catecholamine concentrations among three brain areas of four pureline populations of visually isolated chicks. The purelines used were a commercial male line, a fertility selected line, an unselected fertility control line, and unselected White Jersey Giants. In general, male chicks had significantly larger brain weights than females. Six catecholamine-related compounds (norepinephrine, epinephrine,l-DOPA, dopamine, DOPAC, and MHPG) were measured via HPLC-ECD. No significant differences in neurochemical concentration were observed for any line or brain area due to sex of the chick. The hypothalamus (HT) contained the greatest concentration of catecholamines in all lines, followed by the intramedial hyperstriatum ventrale (IMHV) and optic tectum (OT). The HT exhibited consistent lateralization in all lines with the right HT containing ca. 30% more catecholamines than the left HT. While no consistent lateralization was observed among the other brain areas, the IMHV exhibited significantly different degrees of lateralization among the populations. Neuronal activity, as measured by MHPG:NE and DOPAC:DA ratio varied by line within each brain area. There were line differences for MHPG:NE in the HT, IMHV, and OT, while line differences for DOPAC:DA were observed in the HT. Since differences among purelines have been demonstrated in this study, care must be given to precisely define the genotype of chicks used in behavioral and neurochemical research.
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  • 18
    ISSN: 1573-5060
    Keywords: Brassica oleracea ; Cauliflower ; Stalk rot ; Screening ; Genetics ; Resistance ; Sclerotinia sclerotiorum
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The inheritance of resistance in cauliflower to stalk rot (Sclerotinia sclerotiorum (Lib.) de Bary) was investigated in population from six generations of six crosses. Disease incidence was recorded on 4 parents, 6 Fs 1, 6 Fs 2 and 12 back-crosses in a screenhouse under artificially created epiphytotic conditions. Resistance to stalk rot in this set of parents was found to be polygenic and under the control of recessive genes and due primarily to additive gene action. A breeding strategy emphasizing recurrent selection should lead to improvement in resistance.
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  • 19
    Electronic Resource
    Electronic Resource
    Springer
    European archives of psychiatry and clinical neuroscience 240 (1991), S. 188-190 
    ISSN: 1433-8491
    Keywords: Families ; Genetics ; Polydiagnostic approach ; Schizophrenia ; Swedish family complex
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary A polydiagnostic computerized diagnostic system for psychosis was used in a Swedish family complex, and 51 patients with psychiatric symptomatology were examined with eight main diagnostic systems for schizophrenia and three systems for schizophrenic subgroups. All patients fulfilled the criteria for schizophrenia according to Taylor et al., 50 according to Carpenter, 41 according to RDC, and 31 of the 51 according to DSM-III and DSM-III-R. The hypothesis that the patients in the Swedish family complex differ from other phenotypes of schizophrenia must be refuted based on the data of the present study.
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  • 20
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 39 (1991), S. 755-766 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We calculate a range of isotropic and anisotropic spectral moments of the dipole oscillator strength distribution for N2 in the random phase approximation. The internuclear dependence of, in particular, S∥(k) is nonnegligible and vibrationally averaged moments are reported. The results are compared to other calculations and to experiment when available, and we conclude that the scheme gives reliable results. Based on our results, we predict a 10% anisotropy in the stopping power of oriented N2 molecules.
    Additional Material: 6 Tab.
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  • 21
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The three azaborine isomers with the formula C4H6BN, 1,2-, 1,4-, and 1,3-azaborine (I, II, and III), have been examined using MNDO (modified neglect of diatomic overlap) calculations. The most stable azaborine was I (heat of formation -8.147 kcal/mol), followed by II (+11.60 kcal/mol) and III (+16.64 kcal/mol). Qualitatively, although the π- and π*-orbitals calculated for the azaborines exhibited an ordering similar to that in benzene and borazine, the HOMO/LUMO energy differences (9.27, 9.68, and 8.44 eV, respectively) were smaller than was the difference calculated for borazine (12.81 eV), but of the same magnitude as the difference for benzene (9.76 eV). With the exception of borazine, each molecule had a π-orbital for the HOMO and a π*-orbital for the LUMO; borazine's LUMO was a π*-orbital. The calculated shapes and atomic contributions for the π-and π*-orbitals of the azaborines were best described as “hybrids” of the π- and π*-orbitals of benzene and borazine. As was observed for the π- and π*-orbitals of borazine, the azaborines exhibited increased orbital density at the nitrogen atom in the π-bonding orbitals and at boron in the π-antibonding orbitals, as would be predicted from electronegativity considerations. Although I and II exhibited significant double- and single-bond localization, all of the ring bonds in III were delocalized. The delocalization in III was not uniform but, rather, resembled two inequivalent fused allyl systems. The cyclotrimer (IV) of 1,2-azaborine (heat of formation -44.07 kcal/mol), based purely on thermodynamic considerations, was predicted to form spontaneously from three monomer molecules with the concurrent loss of three molecules of dihydrogen. The cyclotrimers that could theoretically be produced from 1,2-azaborine without the loss of dihydrogen (IVc and IVt) were each calculated to be less stable (heats of formation +24.45, and +33.29 kcal/mol, respectively) than was the experimentally observed IV. The carbon molecules triphenylene (TP) and cis- and trans-4a,4b,8a,8b,12a,12b- hexahydrotriphenylene (TPc and TPt) (heats of formation +76.79, +101.6, and +103.1 kcal/mol, respectively) were each calculated to be less stable than were the azaborine cyclotrimer analogs, as was observed in comparisons of benzene with the azaborines and borazine.
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
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  • 22
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    Electronic Resource
    Springer
    Molecular genetics and genomics 228 (1991), S. 361-371 
    ISSN: 1617-4623
    Keywords: Plant ; Hormone ; Genetics ; Hypocotyl ; Development
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have isolated nine independent auxin-resistant mutants of Nicotiana plumbaginifolia by culturing M2 seedlings in the presence of indole-3-acetic acid ethyl ester or 1-naphthaleneacetic acid at concentrations which significantly inhibit hypocotyl elongation of the wild type. The mutations were induced by treating seed with ethyl methanesulphonate and were found in the course of screening 10 000 individual M2 families. Auxin resistance was in all cases the result of a mutation at a single, nuclear locus. The dominance relationships of two of the mutants could be defined as recessive or dominant; all other mutants showed partial dominance. In contrast to previously described mutants of Arabidopsis and N. plumbaginifolia, all of the present mutants were specifically resistant to auxin; the mutants were cross-resistant to several auxins, but showed no increased resistance to cytokinin, abscisic acid, ethylene or 1-amino-cyclopropane-1-carboxylic acid. The importance of the choice of the selection criterion for the isolation of specific resistance traits is discussed.
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  • 23
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    International Journal of Quantum Chemistry 40 (1991), S. 409-414 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In a recent work, Csvinszky formulated a variational density-functional approach for the investigation of the spatial generalization of Kato's theorem by March. In the previous work, a 10-electron model system (filled K and L shells) was considered. In the present work, the investigation is extended to two other cases: a 28-electron model system (filled K, L, and M shells) and a 60-electron model system (filled K, L, M, and N shells). As in the previous work, several expressions are adapted for the kinetic-energy functional of the electrons and the intriguing question of identifying the “best” kinetic-energy functional is raised and discussed.
    Additional Material: 2 Tab.
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  • 24
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    International Journal of Quantum Chemistry 40 (1991), S. 421-428 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new type of correlation functional derived from the second-order expression for the correlation energy of an atom is proposed. The derived correlation potential contains one free parameter, which is determined by fitting the known pair correlation energy. The calculations with this potential in the Kohn-Sham approximation give rather accurate values for the matrix elements of different operators.
    Additional Material: 3 Tab.
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  • 25
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    International Journal of Quantum Chemistry 40 (1991), S. 457-473 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown that the Heisenberg Lie algebra of the nondegenerate harmonic oscillator leads to a basis {J+, J0, J-} of LASU(2). The Hamiltonian of the system is proportional to J0, and the basis elements give rise to irreducible tensors in the associative enveloping algebra of the Heisenberg Lie algebra. The construction of these irreducible tensors is studied with special attention being paid to the case in which they act upon a single vector space spanned by the harmonic oscillator basis functions. A tensor coupling rule is developed, and useful application is made of it in the calculation of general expressions for vibrational operators and their matrix elements. Throughout, the value of the additional algebraic quantum numbers (l, m) is emphasized.
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  • 26
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    International Journal of Quantum Chemistry 40 (1991), S. 501-510 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In excited states of atoms and molecules, as well as in time-dependent situations, the one-electron density no longer suffices to completely characterize the electronic state; in addition, one now requires information about the electronic phase or the current density. We show that, for a stationary electronic state, the continuity equation of quantum fluid dynamics represents a differential equation for the electronic phase, which must be solved subject to certain periodicity conditions. These periodicity conditions arise from the nodal topology of the wave function and give rise to quantized vortices of current. The consequences of writing an electronic “wave function” for a many-electron system directly in terms of the single-particle density and phase have been investigated. We have shown that such a procedure leads to the appearance of an “internal magnetic vector potential.” We also establish the connection between the electronic phase and the geometrical (“Berry”) phase accompanying the adiabatic transport of a quantal system around a closed loop in parameter space. This leads to a generalization of the current density concept and allows us to discuss the geometrical phase in terms of the circulation of this current in parameter space.
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  • 27
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Environmental effects on the electronic structure of molecules caused by external perturbations are studied by means of an expansion of molecular orbital wave functions into valence-bond (VB) wave functions. Applications are carried out to the π system of butadiene, hydroxyethylene, acrolein, and carbonyl oxide and also to the full electronic system of water. The external perturbations considered are uniform electric fields, nonuniform electric fields, and reaction fields created by solvents. A different behavior is found between nonpolar and polar species in the presence of solvents. Some consequences on the behavior of molecules under the influence of the different electric fields are discussed.
    Additional Material: 3 Ill.
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  • 28
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    International Journal of Quantum Chemistry 40 (1991), S. 527-544 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Hartree-Fock problem in two dimensions (2D) has been solved for 1 ≤ Z ≤ 24 using a Gaussian basis and assuming r-1 Coulomb interactions. The order of occupation of the one-electron states is \documentclass{article}\pagestyle{empty}\begin{document}$$ 1s\, \ll \,2s\, 〈 2p\, 〈 3s\, 〈 3p 〈 4s\mathop 〈 \limits^ \approx \,3d 〈 4p $$\end{document} like in the 3D case. The 1s shell is found to be particularly small and strongly bound, making the 2D hydrogen a “superhalogen” and the 2D He a “superinert gas.” In contrast to 3D, 4s13d2 and 4s23d3 configurations are preferred for the 2D “Sc” and “Cu,” respectively. The six first 2D atoms have stronger and the later ones weaker valence-bonding energies than do their 3D analogs. It is noted that the 2D Dirac energy expression for a hydrogenlike atom for mj = l + 1/2 agrees with the 3D Klein-Gordon one.
    Additional Material: 5 Ill.
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  • 29
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    International Journal of Quantum Chemistry 40 (1991), S. 559-576 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure of a 2D polyglycine network with a pleated sheet structure has been computed at the Hartree-Fock level and by including electron correlation effects within the second order of many-body perturbation theory (electron polaron model). The influence of the size of the atomic basis set and of the extension of the virtual space has been investigated both for single- and many-particle properties. Comparison with the energy of the corresponding single chains showed that interchain interactions (mainly hydrogen bonding) provide an extra stabilization for the 2D network by 7.4 and 10 kcal/mole per glycine residue at the Hartree-Fock and correlated levels, respectively. The energy dispersions are rather anisotropic for all bands whose widths are about 0.5-1 eV along the polypeptide backbones and 0.1-0.2 eV in the perpendicular direction (hydrogen bonds). The HF value of the fundamental energy gap is reduced by 4 eV to 9.2 eV for electron polarons. The wave functions and interaction integrals obtained can be used to calculate further optical and lattice vibrational properties.
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  • 30
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    International Journal of Quantum Chemistry 40 (1991), S. 623-642 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The application of contact transformation theory to the perturbed harmonic oscillator is reexamined in the light of the harmonic oscillator tensors previously presented. It is found that the recasting of the formalism of this problem in terms of harmonic oscillator tensors results in great simplifications, most of which stem from the introduction of the additional algebraic quantum numbers (l, m). The order of magnitude of each fragment of the Hamiltonian is easily recognizable, and the diagonal and nondiagonal parts contained therein are readily identifiable. The determination of the contact transformation operator is reduced to a simple formula. First, an analysis is made for a single mode of vibration, and it is subsequently extended to a multimode case. The perturbed diatomic vibrator is presented as an example.
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  • 31
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    International Journal of Quantum Chemistry 40 (1991), S. 695-702 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The nonlinear Thomas-Fermi-Dirac equation is solved variationally for positive and negative point charges in various III-V compound semiconductors. The parameters are presented, and the results are compared with those obtained numerically.
    Additional Material: 4 Ill.
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  • 32
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    International Journal of Quantum Chemistry 40 (1991) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 33
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    International Journal of Quantum Chemistry 40 (1991), S. 745-752 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present an efficient scheme to evaluate the [0](m) integrals that arise in many ab initio quantum chemical two-electron integral algorithms. The total number of floating-point operations (FLOPS) required by the scheme has been carefully minimized, both for cases where multipole expansions of the integrals are admissable and for cases where this is not so. The algorithm is based on the use of a modified Chebyshev interpolation formula to compute the function exp(-T) and the integral Fm(T) = ∫01u2mexp(-Tu2) du very cheaply.
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  • 34
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    International Journal of Quantum Chemistry 40 (1991), S. 781-787 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A contracted [9s6p2d] basis set derived from Dunning's (14s11p5d) primitive Gaussian set for bromine has been used in ab initio molecular orbital calculations of the dissociation energies of HBr, CH3Br, and Br2, the ionization potentials of Br and HBr, and the electron affinity of Br. The calculated energies are within 0.1 eV of the experimental values. This is similar to the accuracy obtained in a previous study, also using a contracted [9s6p2d] basis set, of the dissociation and ionization energies of the GeHn, AsHn, and SeHn hydrides.
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  • 35
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    International Journal of Quantum Chemistry 40 (1991), S. 847-863 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A distributed-memory model is adopted for the development of parallel ab initio codes with an emphasis on portability as well as efficiency. A highly portable message-passing toolkit (inspired by the Argonne ACRF PARMACS) is described. Examples and results of its use are presented.
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  • 36
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    International Journal of Quantum Chemistry 40 (1991), S. vii 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 37
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    International Journal of Quantum Chemistry 40 (1991), S. 1-8 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 38
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    International Journal of Quantum Chemistry 40 (1991), S. 49-59 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The effects of the solvent on the stability of the zwitterion in the active site of papain is investigated with numerical methods. The solvent is represented by a homogeneous dielectric continuum surrounding a cavity, defined by a fragment of the protein enclosed by a surface obtained following Connolly's method. The discretisized boundary surface is used to solve the Poisson equation in its integral form by means of a numerical approximation based on the boundary element method (BEM), resulting in a set of surface polarization charges. The solvent effect on the proton transfer in papain is studied on the basis of MO-SCF-direct reaction field (DRF) calculations of the energy and charge distribution of the fragment in the field of the surface charges. The role of Asp-158 in the proton transfer in the active site of papain is reevaluated in the presence of the solvent. It is concluded that the effect of the negative charge of Asp-158 is nearly completely screened by the solvent.
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  • 39
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    International Journal of Quantum Chemistry 40 (1991), S. 99-118 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic factor for electron transfer (Δ) is calculated in proteins and in model systems using the CNDO/S and ab initio methods. The decrease of |Δ| with distance for oligoglycins in different conformations is compared to the decrease in other oligomers. The rate of an intramolecular ET reaction in azurin from a disulphide bridge to Cu(II) is calculated with satisfactory agreement with the experiments. For a pathway with three aromatic side groups we obtain a slightly larger electronic factor than one without such groups but the latter do not seem to be essential for the ET process in this case. The primary electron transfer step in the bacterial photosynthetic center of Rhodopseudomonas viridis is studied. The calculated |Δ| for a direct electron transfer process P*BChlLBPhL—P+BChlLBPhL- is very small and inconsistent with the high rate measured. The accessory chlorophyll, being almost perpendicular to the special pair and pheophytin chromophores, does not seem to have good bridging properties and a much larger coupling is provided by the Tyr M208 phenol side group. However, this coupling is also too small to explain the rapid primary charge separation. We believe that the energy splitting between the charge separated singlet and triplet states caused by this coupling is essential to prevent wasteful triplet formation.
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  • 40
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    International Journal of Quantum Chemistry 40 (1991), S. 151-164 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A one-dimensional model for the agonist action of phenoxypropanolamine agents on the β1-adrenoceptor can be based on two electronegative receptor sites positioned from known ligand-receptor interactions. One of these sites interacting with the protonated amine moiety of the ligand and associated with the initiation of stimulus action was shown to be consistent with the presence of an anion in a related article. Contraction of the relevant unbound phenoxypropanolamine conformer is required to enhance the charge-charge interaction. The free energy of contraction of the phenoxypropanolamine conformer with consequent movement of the side chain polar moieties to a position more coincident with that of an ethanolamine has been estimated in two parts using minimal basis STO-3G calculations. The unprotonated species was considered adequate for estimating the intrinsic changes in the backbone compression. Movement of the aromatic ring in the one-dimensional axis due to in-plane meta and para hydrogen atom distortion was earlier shown to be consistent with a displacement of 0.1 Å with an enthalpy requirement of 2.2 kcal. For the aliphatic side chain, an STO-3G enthalpy estimate of 4.6 kcal was required for a movement of 1.0 Å in the position of the protonated amine moiety towards the aromatic ring. Changes in vibrational contributions due to the contraction were small, the entropic contribution being 0.15 kcal, giving a free energy of distortion in the aliphatic side chain of 4.7 kcal. The net movement of the protonated amine and its attendant β-hydroxyl is thus some 1.1 Å in the onedimensional axis for an estimated expenditure of 6.8 kcal enthalpy. Since there is an estimated 6-7 kcal enthalpic advantage shown by the side chain's polar interaction in agonist as opposed to antagonist action, this degree of distortion is consistent with the production of a partial agonist. In the dominant axis of the compression model, the phenoxypropanolamine phenyl ring lies some 0.5-0.7 Å below that of the nonarenaline conformer. The net lowering of the amine moiety in this axis would therefore be 1.6-1.8 Å, but for its raising by 1.9 Å due to the presence of the —OCH2 moiety. The estimate for the distortion for each of the receptor polar sites for agonist interaction would be less than 0.15 Å. In addition, there may be a further 1-2 kcal of free energy still available for further ligand distortion due to the potential amplification of the stimulus signal. The energetics of the model are therefore of the right order in estimating the position of polar receptor sites with good accuracy.
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  • 41
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    International Journal of Quantum Chemistry 40 (1991), S. 213-229 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have performed all-atom constant temperature (T = 285 K) molecular dynamics (MD) simulations on d(GA4T4C)2 and d(GT4A4C)2 for 200 ps using the NMR-derived structures as the starting points. The major purpose of MD simulation is to search the conformational space so that we can construct an ensemble of conformations that will reproduce the experimentally observed 2D NMR NOESY spectra. Analyses of the ensemble of duplex structures reveal that in both oligomers constituent nucleotides predominantly display BI conformations. A simple two-parameter analysis shows that the nature of the long-range collective bending motion is different in the two duplexes. The conformations obtained by use of molecular dynamics are very similar to each other for the same molecule, the root mean square deviation (RMSD) being 1.6 Å for d(GA4T4C)2 and 1.1 Å for d(GT4A4C)2. We have computed theoretical 2D NOESY spectra for an ensemble of a large library of 1200 structures in the MD trajectory for d(GA4T4C)2. Theoretical MD-derived 2D NOESY spectra, averaged through an automated loop computation procedure over the 1200 timewise additivity NOESY simulation spectra, are compared with the corresponding experimental spectra. The agreement between the theoretical and experimental NOESY spectra is good. The results suggest that there is no longer any need to interpret NMR data on the basis of a “nonexistent” time-average structure and that worthwhile information about the realistic composition of the ensemble of conformations that are present in solution can be obtained by interconnecting MD simulations and NMR data.
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  • 42
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An empirical approach for the computation of log P for flexible molecules has been developed. This approach is based upon the use of fragmental parameters for obtaining the free energy of solvation of a given molecular conformation in both water and octan-1-ol. Two parametrization methods have been investigated, and the quality of the fragment parameters obtained assessed by computation of log P values for a number of compounds which can only adopt a single conformation. Comparison of these calculated log P values with experimental measurements revealed that simple empirical models which assume a linear relationship of transfer free energy and fragment solvent accessible area do not adequately represent the interaction of polar fragments with water molecules. In the second parametrization method, therefore, a novel step function was introduced, based upon physical models of the specific hydration of polar fragments able to participate in hydrogen bonding, by water molecules. Fragment parameters derived by the second approach gave excellent agreement between calculated and experimental log P values for rigid molecules containing several classes of functional group.
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  • 43
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    International Journal of Quantum Chemistry 40 (1991), S. ix 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 44
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    International Journal of Quantum Chemistry 39 (1991), S. 3-10 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 45
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    International Journal of Quantum Chemistry 39 (1991), S. 47-57 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A set of electron impact cross sections for vibrational excitation of water in the gaseous phase are first presented. The associated loss function is used in conjunction with a rotational loss function to generate efficiencies for the conversion of low-energy electron energy to rotational and vibrational excitation. An analogous calculation is carried out for intramolecular and intermolecular modes in the liquid phase leading to similar results. We also examine a simple model for the time dependence of the electron hydration process based on a square well with a time-dependent radius and well depth. We can fit the time and wavelength dependence of the experimental absorption coefficients if we introduce another time-dependent parameter that might be encompassed by a diffuse potential well model.
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  • 46
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    International Journal of Quantum Chemistry 39 (1991), S. 115-121 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A non-local core pseudopotential has been used in the framework of floating spherical Gaussian orbital (FSGO) model to study the equilibrium geometries and valence electronic structures of some organolithium and organoberyllium systems. The calculated equilibrium geometries, heats of hydrogenation, average electric polarizabilities, and magnetic susceptibilities are in good agreement with the results of the all-electron FSGO model calculations. Valence electron wave functions obtained here have been used to predict the valence electron Compton profiles (CP) and electron momentum distributions (EMD) of the systems studied. A good correlation has been shown among the peak height of the CP (J(0)), valence electron energy (Ev), and number of valence electrons (Nv).
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  • 47
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    International Journal of Quantum Chemistry 39 (1991) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 48
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    International Journal of Quantum Chemistry 39 (1991), S. 149-157 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio Hartree-Fock band structure and molecular calculations have been performed to study the electronic structure of LiN3 in a monoclinic C 2/m crystal structure. The total energy, band structure, density of states, and charge densities are computed. The calculated lattice energy (energy to separate the ions infinitely apart) of 8.6 eV agrees very well with 8.45 eV deduced from Madelung and London polarizability energies. The calculated split of the N 1s core bands of 5.0 eV compares favorably with the experimental X-ray photoelectron value of 4.4 eV. This good agreement is not contributed to crystalline environment effects as proposed in earlier MO studies of N3- where the best values obtained were 5.1, 5.8, and 6.3 eV, but to the quality of the nitrogen core basis set. The calculated valence density of states supports one of two competing interpretations that peak III observed in the X-ray photoelectron spectrum arises from contaminations or other extrinsic states.
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  • 49
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    International Journal of Quantum Chemistry 39 (1991), S. 197-209 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The correct description of energetic separations between atomic states arising from s2dn, s1dn+1, and dn+2 electronic configurations is known to be essential to treat transition metals. Effective core potentials calculations for first-row transition elements with an Ar core show important errors in these energies when compared with all-electron values. A procedure to eliminate errors while maintaining the formalism unaltered and retaining the ar core is proposed.
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  • 50
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    International Journal of Quantum Chemistry 39 (1991), S. 235-250 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 51
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    International Journal of Quantum Chemistry 39 (1991), S. 399-409 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The effects of perturber gases, partial pressures in the range 0-50 atm, on the absorption spectra of high-n Rydbergs, n ≥ 10, in methyl iodide and benzene have been investigated. The perturbers were rare gases and H2. It has been shown that the spectroscopic energy shift Δ = Δ(ρ, n) is given by Δ = Δ°ρ, where ρ is the number density of the perturber, for n ≥ 10. The shift data can be interpreted using a Fermi model, and values of scattering lengths for perturbers can be extracted. These scattering lengths are internally consistent, independent of the absorber, and in excellent agreement with electron-swarm results. Given that the Fermi model is nonspecific and microscopic, scattering shifts and lengths for mixtures of perturber gases can be predicted. These predictions, having been verified by experiment for He/Ar mixtures, provide a means of “tailoring” any required scattering length. Finally, it is shown empirically that the determinative scattering parameter is the polarizability of the perturber, and a universal relationship a = -0.26α + 1.18 between scattering length a, in Bohr radii, and polarizability α is found to exist.
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  • 52
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    International Journal of Quantum Chemistry 39 (1991), S. 449-454 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The intermolecular modes of the bifurcated water dimer are determined at the HF level using an extended basis set. In these computations, the donor libration frequency is found to be real and the bifurcated structure does not collapse toward the linear dimer. This result is contrary to all previous ab initio computations, which have predicted a Hessian with one negative eigenvalue. A good representation of other intermolecular modes, such as the libration of the acceptor, also requires an extended basis set. An interesting infrared active transition is predicted around 444 cm-1. This transition, which corresponds to the donor wag, is found in the low-temperature spectrum of water in a N2 matrix.
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  • 53
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    International Journal of Quantum Chemistry 39 (1991) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 54
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    International Journal of Quantum Chemistry 39 (1991), S. 561-583 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Perturbation theory for the rate constant of nonadiabatic solvation is presented. Miller's treatment of the RRKM theory is used for the unperturbed rate constant, and thereby the “string model” of chemical reaction is used for the description of the perturbation of solvation. The reaction path under the influence of the external force field is defined as the intrinsic reaction coordinate (IRC) that is treated as a string. The string is thrown in the external static force field that acts as a nonadiabatic source of perturbation. As an application of the present treatment, the effect of the external point charge for hydration reaction of CO2 is calculated as a preliminary model for catalytic activity of the carbonic anhydrase in the tissues and lung capillary vessels.
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  • 55
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    International Journal of Quantum Chemistry 39 (1991), S. 615-623 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The square root of the electron density satisfies a Schrödinger equation having a correction term, called the Pauli potential, in addition to the Kohn-Sham potential. The Pauli potential is given in exact form for the ground state of two- and three-level atoms and ions (e.g., Be and C). Expressions for the kinetic energy and the one-body virial are also derived.
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  • 56
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    International Journal of Quantum Chemistry 39 (1991), S. 649-656 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A modification of virtual orbitals seems to be an inexpensive way of calculating a large part of the correlation energy. Three types of MVOS have been compared in this paper, on the basis of limited valence-shell CI calculations for some lower states of the H2O molecule: A  -  orthogonalized eigenfunctions of exchange operators; B  -  eigenfunctions of one combined exchange operator; C  -  eigenfunctions of the Fock operator for a highly ionized system. For small virtual spaces (20% of available orbitals used), approach C gives 70% of EcorrCI-SD, being superior to the two other approaches. When using only 50% of MVOS, all the three types of approaches result in calculating 90% of EcorrCI-SD, but the ionic orbitals give a better description of the state separations.
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  • 57
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    International Journal of Quantum Chemistry 39 (1991), S. 699-708 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: SC-MEH-MO calculations have been carried out on select clusters of the YBa2Cu3O7 lattice structure. The results of an earlier computation on small CuO clusters are presented for comparison with the finding obtained on a YBa2Cu8O26+ extended cluster. In the latter, the antiferromagnetic coupling of singularly occupied Cu and O levels is analyzed.
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  • 58
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    International Journal of Quantum Chemistry 39 (1991) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 59
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    International Journal of Quantum Chemistry 39 (1991), S. 805-812 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have adopted the uniformly charged sphere model of atomic nucleus for one-electron atoms H, Ar17+, Xe53+, Hg79+, and U91+ and calculated several energy levels by solving the matching equations of the inward and the outward radial wave functions for the Schrödinger as well as for the Dirac equations. The finite-size effect (FSE) of the atomic nucleus on the energy levels of nonrelativistic atoms has been found one order of magnitude smaller than the effect on the relativistic atoms. The FSE works mainly on s states for nonrelativistic atoms, whereas for relativistic atoms, it works on s and p1/2 states. The energy levels of p states have been calculated lower than the energies of the corresponding s states when we have included the FSE.
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  • 60
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    International Journal of Quantum Chemistry 40 (1991) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 61
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    International Journal of Quantum Chemistry 40 (1991), S. 3-9 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A counterexample to the adiabatic approximation theorem is given when degeneracies are present. A formulation of an alternative version is proposed. A complete asymptotic decomposition for n dimensional self-adjoint Hamiltonian systems is restated and used.
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  • 62
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    International Journal of Quantum Chemistry 40 (1991), S. 55-66 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A theoretical one-body model of librational motion in liquid water and ice Ih is proposed within the quantum mechanical treatment of a rigid and pointlike dipole in a permanent electric field and the concept of the internal electric field justified for V-structure of liquid water.
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  • 63
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    International Journal of Quantum Chemistry 40 (1991), S. 127-137 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio MO calculations have been carried out for the unimolecular decomposition of formamidine. The Hartree-Fock method in LCAO approximation with the 4-31G basis set was used. The 4-31G potential hypersurface has been further studied. The stationary points (R, TS, and P) were localized. A reaction analysis by correlation of bond-order indices and localized molecular orbitals demonstrated that the decomposition is an asynchronous process. The TS can be described as four-membered ring.
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  • 64
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    International Journal of Quantum Chemistry 40 (1991), S. 179-199 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This is the first of a series of papers on the ab initio calculation of the second, third, and fourth derivatives of the energy with respect to nuclear coordinates. The knowledge of these derivatives yields anharmonic spectroscopic constants. Here, we present efficient formulae for the analytic evaluation of these derivatives for closed-shell SCF wave functions. We discuss our implementation of the third derivative formula, in particular the integral and vectorization procedures. Applications are reported for H2S, CHOF, and HCCF.
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  • 65
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    International Journal of Quantum Chemistry 40 (1991) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 66
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    International Journal of Quantum Chemistry 40 (1991), S. 305-314 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We studied the midgap levels appearing in the photoexcited conductive polymers such as trans- and cis-polyacetylenes, poly(p-phenylene), polypyrrole, and polyacene based on the molecular orbital analysis. The midgap levels are constructed from the transformation of the highest occupied molecular orbital and the lowest unoccupied molecular orbital of the ground state. As the result of the localization of the wave functions associated with these midgap levels, large polarization is induced between adjacent carbon atoms. Based on the examination of the energy gap between the two midgap levels, the polymers with a nondegenerate ground state such as cis-polyacetylene, poly(p-phenylene), and polypyrrole would show no sizable photoconductivities.
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  • 67
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    International Journal of Quantum Chemistry 40 (1991), S. 379-388 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have recently proven an inequality for the exact noninteracting kinetic energy density functional \documentclass{article}\pagestyle{empty}\begin{document}$ T_s [n]:\mathop {\lim }\limits_{x \to \infty } T_s [n_\lambda ^x] \le T_s [n_s^y [n] + T_S^2 [n] 〈 \infty,where{\rm }n_\lambda ^x (x,{\rm }y,{\rm }z) = \lambda n(\lambda x,{\rm }\lambda {\rm y, }\lambda z) $\end{document}. It is known that the gradient expansion through fourth order, TsGE[n], violates this inequality. Toward improving TsGE[n], we have constructed two new functionals, Ts1[n] and Ts2[n], by keeping the zeroth and second orders in TsGE[n] and replacing the fourth order with two simple terms, respectively, so that these new functionals satisfy the inequality. Numerical tests are presented for Ts1[n], Ts2[n], and TsGE[n] and for the gradient expansion through second order. Hartree-Fock and hydrogenic atomic densities are employed.
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  • 68
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    International Journal of Quantum Chemistry 40 (1991), S. 429-432 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 69
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    International Journal of Quantum Chemistry 40 (1991) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 70
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    International Journal of Quantum Chemistry 40 (1991), S. 491-500 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Two possible reaction paths for the pyrolysis of the ethylester of glyoxylic acid have been studied by ab initio molecular orbital calculations. The basis sets 3-21G and 6-31G* have been used, and electron correlation has been included by Møller-Plesset calculations up to fourth order. Our calculations indicate that the reaction leading to acid and ethylene through a 6-membered ring transition state is favored relative to a process involving a formyl hydrogen transfer via a 5-membered ring to the alkyl unit leading to ethane, CO, and CO2. The predicted activation energies for these two reactions obtained at the highest level of calculation, MP4(SDTQ)/6-31G*, are 50.4 and 71.7 kcal/mol, respectively. The transition states have RHF wave functions that are stable relative to UHF solutions using the 3-21G basis. The geometry of the transition states and IRC following indicate that both reactions are strongly asynchronous: The C—O bond rupture is virtually completed before hydrogen transfer occurs. For comparative purposes, analogous calculations have been performed for the ethylester of formic acid, where it is confirmed that a 6-membered ring transition state is preferred relative to a 4-membered one by around 42 kcal/mol at the highest level of calculation.
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  • 71
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    International Journal of Quantum Chemistry 40 (1991), S. 545-558 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A time-dependent molecular orbital method has been developed to study charge transfer in collisions of ions with metal surfaces at energies between 1 and 100 au. A set of localized basis functions consisting of generalized Wannier functions for the surface and s- and p-atomic functions for the ion, is used to separate the system into primary and secondary regions. An effective Hamiltonian and time-dependent equations for the electron density matrix are obtained in the primary region, where most charge transfer occurs. The equations for the electron density matrix are solved with a linearization scheme. The method is suitable to study atomic orbital orientation for collisions of ions and surfaces. A model calculation for Na+ + W(110) collisions with a prescribed trajectory is presented. The interaction potentials between the W(110) surface and Na+ 3s and 3p orbitals are calculated from Na+ pseudopotentials. Results show that the yield of neutralized atoms in 3p states changes as the collision energy is lowered.
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  • 72
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    International Journal of Quantum Chemistry 40 (1991), S. 605-609 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown that the dispute about the conditions for physical admissibility of Schrödinger wave functions may be settled if the following two questions are clarified: (a) Are these condittions rooted in the foundations of quantum mechanics or invoked only for particular physical models? (b) Do we consider either the position-space wave function or the momentum-space wave function? Both the case of closed states and scattering states are considered. Some general remarks about these conditions are made in the Conclusion.
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  • 73
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    International Journal of Quantum Chemistry 40 (1991), S. 643-648 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Parts of the potential energy surface of the title process and related processes have been investigated at the SCF/6-31G**, SCF/6-31++G**, and MP2/6-31++G** levels. The investigated reaction is exothermic (-6.23 kcal/mol, MP4/6-31++G**//MP2/6-31++G** level, ZPE included): A linear intermediate radical anion, Li—H—Li—H⋅-, is significantly stabilized with respect to LiH + LiH⋅- (-38.74 kcal/mol, the same level as above). The BSSE at MP2/6-31++G**//MP2/6-31++G** amounts to 1.8 kcal/mol. The title process seems to be suitable for experimental study in molecular beams.
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  • 74
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is demonstrated, from general physical principles, that a new kind of quantum correlations, associated with the appropriate reduced density matrix, Γ, exist in amorphous condensed matter. The treatment starts from general representation properties of the second-order reduced density matrix. The derivations, using general statistical notions in a quantum mechanical framework, lead to a decomposition of the two-matrix into the large-, the small-, and the unpaired components. Since this result can be identified with the extreme case of Coleman, the formulation is automatically ensemble-representable. Introducing the complex scaling method (CSM) into the Bloch-Liouville equation for Γ it is shown how the temperature T in the aforementioned ensemble can be specified. This defines, in the present development, thermalization in a system far from equilibrium. It is further shown that this thermalization leads to the formation of certain irreducible (Jordan) blocks containing some (incomplete) phase information. The connection between these irreducible blocks and the concept of a coherent-dissipative structure is made. The treatment reveals general features of the coherent-dissipative structure and a certain universality of the coherence-breaking mechanism. The main equations relate the relaxation time Trcl and the temperature T with the minimum degrees of freedom Smin and the associated spatial domain dmin of the structure. Relevant examples are, e.g., proton transfer and H+ conductivity in water, conductivity of molten alkali chlorides, quantum correlation effects in high-Tc superconductors, and spin dynamics of Gd far above the Curie point.
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  • 75
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    International Journal of Quantum Chemistry 40 (1991), S. 721-722 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 76
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    International Journal of Quantum Chemistry 40 (1991), S. 753-772 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new approach to the evaluation of two-electron repulsion integrals over contracted Gaussian basis functions is developed. The new scheme encompasses 20 distinct, but interrelated, paths from simple shell-quartet parameters to the target integrals, and, for any given integral class, the path requiring the fewest floating-point operations (FLOPS) is that used. Both theoretical (FLOP counting) and practical (CPU timing) measures indicate that the method represents a substantial improvement over the HGP algorithm.
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  • 77
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    International Journal of Quantum Chemistry 40 (1991), S. 789-796 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Balanced atomic basis sets, at the double-zeta level with d functions, have been developed for the elements Li—Ar within the relativistic effective core potential procedure. The number of primitive functions, their orbital exponents, and the number of contractions were chosen for use in both Hartree-Fock and correlated calculations. Spin-orbit splittings have been obtained using the approximate operator corresponding to relativistic effective potentials and are compared with experimental values.
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  • 78
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    International Journal of Quantum Chemistry 40 (1991), S. 829-846 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio averaged relativistic effective core potentials (AREP), spin-orbit (SO) operators, and valence basis sets are reported for the elements Fr through Pu in the form of expansions in Gaussian-type functions. Gaussian basis sets with expansion coefficients for the low-energy states of each atom are given. Atomic orbital energies calculated under the j-j coupling scheme within the self-consistent field approximation and employing the AREP'S in their unaveraged form (REP'S) agree to within 10% of orbital energies due to numerical all-electron Dirac-Fock calculations. The accuracy of the AREP'S and so operators is also shown to be good through comparisons of calculated so splitting energies with all-electron Dirac-Fock results.
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  • 79
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  • 80
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    International Journal of Quantum Chemistry 40 (1991), S. 9-21 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The calculations for uracil and its three sulfur analogs, 2-thiouracil, 4-thiouracil and 2,4-dithiouracil, were carried out using ab initio LCAO-MO method at the Hartree-Fock level. The molecular structure of uracil was fully optimized using standard 3-21G, 6-31G* and 6-31G** basis sets, while geometry optimizations of the thio- and dithio-uracils were performed at the 3-21G* and 6-31G* levels. The basis set effects on structure optimization and one-electron properties are discussed. The geometrical parameters and dipole moments calculated at different levels are compared with the available experimental data.
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    International Journal of Quantum Chemistry 40 (1991), S. 61-71 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The origin of torsional potentials in H3CSSCH3, H3CSSH, and HOOH and the anisotropy of the local charge distribution has been analyzed in terms of atomic multipoles calculated from the ab initio LCAO-MO-SCF wave function in the 6-31G* basis set. The results indicate that for longer —S—S-bonds the major contribution to these torsional barriers are electrostatic interactions of the atomic multipoles located on two atoms forming the rotated bond. This finding demonstrates the important role of electrostatic 1-2 interatomic interactions, usually neglected in conformational studies. It also opens the possibility to derive directly from accurate ab initio wave functions a simple nonempirical torsional potential involving atomic multipoles of two bonded atoms defining the torsional angle. For shorter —O—O— bonds, use of more precise models and inclusion of 1-3 interactions seems to be necessary.
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    International Journal of Quantum Chemistry 40 (1991), S. 119-130 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Mechlorethamine HN2 is a nitrogen mustard that is recognized as a fundamental model for the alkylating agents belonging to this family. This molecule is an anticancer drug that reacts strongly with intracellular DNA through a complex electrostatic mechanism. An ab initio quantum molecular study of three molecular models (neutral HN2, quaternized HN2+ aziridinium, and HN2+ free carbonium) is presented in this work. The Conformations and the Mulliken charge distributions were obtained by using HF/STO-3G, HF/6-31G*, and HF/6-31G computations. Conformational aspects and electrostatic properties are discussed with respect to the mechanism of alkylation.
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    International Journal of Quantum Chemistry 40 (1991), S. 183-198 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The synthetic polytetrapeptide using the repeating sequence VPGG found in the fibrous protein, elastin, exhibits a reversible inverse temperature transition, i.e., the molecular order increases on raising the temperature of the polypeptide in aqueous solutions. The matrices formed from the coacervate by γ-irradiation-induced cross-linking exhibit an elastic modulus and temperature dependence of elastomeric force with similarity to that of fibrous elastin. As demonstrated on poly(VPGVG), which forms a β-spiral structure with recurring Type II β-turns, the molecular structure of the elastin-based polypeptides is fundamental to an understanding of the mechanism of elasticity.It was found previously that the repeating unit VPGG in the polytetrapeptide forms a Type II β-turn with a hydrogen bond between Val1 C=O and Gly4 NH. This secondary structural feature is confirmed in this report by 2D NMR data as indicated by specific NOE cross-peaks, particularly, dNN(3,4), dαN(2,3), dαN(2,4), and dγN(1,4). The same secondary structural feature is found in the 2D NMR data for its analog polypeptide, poly(IPGG).The NMR data provide conclusive evidence for the Type II β-turn secondary structure. Molecular mechanics computations were performed to develop a more detailed tertiary structure for the polytetrapeptides. The ECEPP/2 potential field and build-up strategy were employed in mapping conformational space of VPGG and its high polymer. In addition, helical structures are sought using the Go-Scheraga condition, on the assumption that the repeated sequence would preferentially adopt a helical or nearhelical conformation on optimization of intramolecular hydrophobic contacts. A number of structures with helically recurring β-turns was obtained and can be used as starting structures in future studies that are to include hydration. The structures were also evaluated in terms of potential energy using the CHARMm force field.
    Additional Material: 6 Ill.
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  • 84
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    International Journal of Quantum Chemistry 40 (1991), S. 231-245 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Qinghaosu (Artemisinin), is a sequiterpene lactone containing a peroxide group, which has been used from ancient times as an anti-malarial agent in Chinese medicine [1]. Unlike chloroquine and related compounds used as anti-malarial agents, resistant strains of malaria have not developed so far to qinghaosu. In this article; we present the results of a theoretical study of the structure of this and related molecules, using both semi-empirical and ab-initio quantum chemical methods, and an investigation of the known structure/activity (S/A) relationships of Qinghaosu and related molecules as anti-malarials using Molecular Electrostatic Potential (MEP) maps. The unusual 1,2,4-trioxane ring system, and other ring systems containing the peroxide linkage occurring in qinghaosu have also been studied in some detail. We speculate that the reactivity of this system in this context is related to a rather dramatic region of negative potential that surrounds the molecule and that includes the —O—O— linkage as well as the ring oxygen atom.
    Additional Material: 7 Ill.
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  • 85
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 40 (1991) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 86
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    International Journal of Quantum Chemistry 40 (1991), S. xi 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 87
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    International Journal of Quantum Chemistry 40 (1991), S. xxix 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 88
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 40 (1991), S. xiii 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 89
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 40 (1991), S. 1-8 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 90
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 40 (1991), S. 35-42 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electron propagator theory provides a correlated one-electron picture of bonding through accurate calculations of electron binding energies and Feynman-Dyson amplitudes. Reference state averages are improved with certain infinite-order corrections by employing amplitudes from coupled cluster singles and doubles calculations. The results contain all corrections to Koopmans's theorem through third-order and many infinite-order corrections. Illustrative calculations are performed on the ionization energies of H2O, HF, BH, and OH-, and on the electron affinities of CaF+ and CH+.
    Additional Material: 6 Tab.
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  • 91
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 40 (1991), S. 9-34 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown that the exact pair-cluster coefficients corresponding to the fully correlated limit of cyclic polyene model satisfy the equations of the approximate coupled-pair theory with quadruples (ACPQ) approach, but do not represent any solution of the standard coupled-cluster method with doubles (CCD) equations. Implications of this result for the performance of various coupled-cluster (CC) approaches, when applied to cyclic polyene model, are discussed.
    Type of Medium: Electronic Resource
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  • 92
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    International Journal of Quantum Chemistry 40 (1991), S. 81-93 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new theoretical tool for analyzing the excited-state wave functions obtained from separate Hartree-Fock or configuration-interaction calculations on each state is proposed. Isopycnic transformations among the natural spin-orbitals of the ground and excited states yield the maximum similarity spin-orbitals (MSOs). These MSOs, which are a generalization of the method of corresponding spin-orbitals due to Amos and Hall, allow one to identify the initial and final spin-orbitals associated with the electronic excitation. The proposed formalism is equally valid in the cases of either identical or different geometries of the ground and excited states and makes it possible to assess magnitudes of the nuclear and electron relaxations accompanying the excitation. The methodology is illustrated using the example of the ROHF/6-31G** calculations on the keto and zwitterionic forms of the 3-hydroxypyrone molecule in their ground and two lowest-lying triplet excited states.
    Additional Material: 3 Ill.
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  • 93
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    International Journal of Quantum Chemistry 40 (1991), S. 71-80 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The sum of the second- and fourth-order Hylleraas functionals and the Newton-Raphson optimization technique have been used to optimize a manifold of first- and second-order correlation orbitals (FOCOS and SOCOS) for the spin-restricted Hartree-Fock (RHF) wave function. The correlation orbitals are linear combinations of the RHF virtual orbitals. The computational implementation of the new method is discussed and a numerical application to a simple model system is presented to illustrate the capabilities of the proposed methodology.
    Additional Material: 3 Tab.
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  • 94
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    International Journal of Quantum Chemistry 40 (1991), S. 43-70 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energy at sixth-order Møller-Plesset (MP6) perturbation theory is given and dissected into 36 size-consistent energy contributions resulting from single (S), double (D), triple (T), quadruple (Q), pentuple (P), and hextuple (H) excitations. It is shown that MP6 is an O(N9) method, but less costly approximations to MP6 are possible. MP6 is used to analyze and compare coupled cluster (CC) and quadratic configuration interaction (QCI) methods, namely CCD, CCSD, CCSD(T), CCSD(TQ), CCSDT, CCSDT(Q), CCSDT(QQ), QCISD, QCISD(T), and QCISD(TQ). For larger molecules and molecules with distinct T contributions, CCSD is significantly better than QCISD because CCSD covers a relatively large number of T contributions and in particular T,T coupling effects at sixth order. Differences between the two methods become larger at higher orders of perturbation theory. If T and Q excitations are included in QCISD and CCSD in a noniterative way - thus leading to QCISD(T), CCSD(T), QCISD(TQ), and CCSD(TQ) - then differences between QCI and CC decrease. Hence, if a given molecular problem depends on the inclusion of T effects, improved calculational results will be obtained in the following order: MP4(SDTQ) 〈 QCISD(T) 〈 CCSD(T) 〈 QCISD(TQ), CCSD(TQ) 〈 CCSDT. None of the methods investigated is correct in sixth order. Only if CCSDT is extended to CCSDT(QPH), which is also an O(N9) method, are all MP6 energy contributions then covered.
    Additional Material: 6 Ill.
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  • 95
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    International Journal of Quantum Chemistry 40 (1991), S. 95-106 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We derive semiclassical energy functions in configuration space that provide upper or lower bounds to the energies of quantum-mechanical systems. The bounds are predicted by rigorous theorems about the local energy which we choose to depend on adjustable parameters in order to improve the accuracy of the results. We apply the method to one-dimensional models, central-field systems, and the Zeeman effect in hydrogen.
    Additional Material: 5 Ill.
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  • 96
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    International Journal of Quantum Chemistry 40 (1991), S. 107-111 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We discuss the solution of the time-dependent Schrödinger equation. The split operator method is used to propagate an initial wave function and the continuous Fourier transform is applied to obtain the energy eigenvalues. High resolution in the energy is obtained without line shaping techniques.s
    Additional Material: 1 Tab.
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  • 97
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    International Journal of Quantum Chemistry 40 (1991), S. 131-139 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A demonstration of kinetic balance failure in heavily contracted basis sets is given. Other possible methods of constructing small component basis sets for 4-component relativistic calculations are discussed. The position of the additional negative energy levels in extended balance calculations in some recent many-electron calculations is examined.
    Additional Material: 1 Ill.
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  • 98
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    International Journal of Quantum Chemistry 40 (1991), S. 121-130 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The extension of the relativistically parameterized extended Hückel method REX to systems with translational symmetry is reviewed. This extension (REXBAND) is then applied to the description of the electronic structures of a number of heavy-element solids, namely UB2, UB4, UC, UBC, and UPt3.
    Additional Material: 4 Ill.
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  • 99
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    International Journal of Quantum Chemistry 40 (1991), S. 141-153 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The quantum time evolution in a two-state curve-crossing situation can be computed with the split operator FFT method. We present a version of that scheme that is based on the analytic exponentiation of two-by-two matrices. We use this approach to investigate the vibrational dynamics of the coupled b′, c′1 Σu+ states of the N2 molecule. We focus our study on the sensitivity of time-dependent transition amplitudes to the features of the curve-crossing topology.
    Additional Material: 9 Ill.
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  • 100
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    International Journal of Quantum Chemistry 40 (1991), S. 113-120 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Relativistic self-consistent field (SCF) calculations have been performed on a number of neutral and ionized atoms with basis sets of contracted and uncontracted Gaussian-type functions. Both Dirac-Fock and Dirac-Fock-Breit SCF calculations have been performed with the intent of observing to what extent basis set contraction affects the calculated relativistic and Breit interaction contributions to total atomic energy. It is found that extensive basis set contraction has relatively little effect on the calculated relativistic and Breit interaction energies.
    Additional Material: 3 Tab.
    Type of Medium: Electronic Resource
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