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  • 1
    ISSN: 1432-184X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Surface-soil and subsurface microfloras at the site of a shallow aquifer in Oklahoma were examined and compared with respect to (1) total and viable cell numbers, (2) colony and cell types that grew on various plating media, (3) cell morphologies seen in flotation films stripped from sample particles, and (4) cellular ultrastructure. Appreciable numbers of microbial cells were present in the subsurface (total counts: 106−107 cellsg−1; viable counts up to 106 cells · g−1), but the subsurface microflora was considerably less populous than that of the surface soil (total counts: 109 cells·g−1; viable counts: 107−108 cells · g−1). The subsurface microflora (especially that of the saturated zone) also appeared to be much less diverse, containing fewer microbial types that would grow on enumeration plates (on nutrient-rich media, 3–4 colony types versus 19–22 for the surface soil) and fewer cell types that could be distinguished by direct microscopy (3–4 types versus 17 for the surface soil). The specific types of microorganisms that were numerically predominant in the aquifer sediments were entirely different from those that were predominant in the surface soil. Moreover, the predominant types varied from one depth to another within the saturated zone. The potential metabolic capability of the subsurface microflora, as indicated by its readiness to grow rapidly on nutrient-rich media, also varied with depth.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 130 (1981), S. 204-212 
    ISSN: 1432-072X
    Keywords: Agmenellum quadruplicatum ; Nitrogen starvation ; Ultrastructure ; PATO poststain ; Cyanobacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The effects of nitrogen limitation on the ultrastructure of the unicellular cyanobacterium, Agmenellum quadruplicatum, were studied by thin sectioning transmission electron microscopy. Nitrogen became limiting for growth 14–15 h after transfer to nitrogen-limiting medium, but cultures retained full viability for at least 45 h. The c-phycocyanin: chlorophyll a ratio and cellular nitrogen content of the culture dropped rapidly after 14–15 h, as a progressive deterioration of major cell structures took place. Phycobilisomes were degraded first, followed by ribosomes and, then, thylakoid membranes. These structures were virtually depleted from the cells within 26 h. Intracellular polysaccharide accumulated in place of the normal cell structures throughout this period. Nitrogen limitation did not affect polyphosphate bodies, carboxysomes, lipid granules, the cell envelope, or the extra-cellular glycocalyx. All of the ultrastructural changes resulting from nitrogen limitation were reversed upon addition of nitrate to a starved culture. Most cell structures were restored within 3 h, and restoration was complete within 9 h.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 128 (1980), S. 8-11 
    ISSN: 1432-072X
    Keywords: Agmenellum quadruplicatum ; Glycocalyx ; Cyanobacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The marine cyanobacterium Agmenellum quadruplicatum was shown to possess an extracellular glycocalyx similar in structure to those surrounding other bacteria from a variety of natural environments. Thin sections of cells stained with ruthenium red and frozen-etched preparations of unfixed cells indicated the glycocalyx was a network of small fibrils. The glycocalyx was present during all phases of growth, and was not degraded during nutrient limitation.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 133 (1982), S. 11-19 
    ISSN: 1432-072X
    Keywords: Cyanobacteria ; Ultrastructure ; Mastigocladus laminosus ; Fischerella ; True branching
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The morphology and ultrastructure of the thermophilic cyanobacteriumMastigocladus laminosus were examined by scanning and transmission electron microscopy. Mature cultures consisted of relatively old, wide filaments that branched frequently to form younger, thinner filaments. The cells of the younger filaments had a consistently cylindrical morphology, while those of older filaments were rounded and pleomorphic. The internal ultrastructure of the cells depended somewhat on their age. As young cells became larger and wider, their thylakoids underwent slight rearrangement and spread out toward the center of the cytoplasm. Polyphosphate bodies, carboxysomes (polyhedral bodies), and lipid-body-like structures increased in number as the cells aged, but ribosomes and cyanophycin granules were depleted. Cell division involved septum formation followed by ingrowth of the outer membrane and sheath. Cells in older filaments were separated from each other by a complete layer of sheath material. Septum formation in older cells was also seen to occur parallel to the long axis of the filament, thereby confirming that true branching took place.
    Type of Medium: Electronic Resource
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  • 5
    ISSN: 1432-072X
    Keywords: Cyanobacteria ; Heterocysts ; Utrastructure ; Cytology ; Akinetes ; Mastigocladus laminosus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The morphological and ultrastructural characteristics of the cyanobacterium Mastigocladus laminosus growing under N2-fixing conditions were examined with light and electron microscopy. Vegetative cells in narrow filaments contained randomly arranged segments of thylakoid membrane, centrally located carboxysomes (polyhedral bodies), peripherally located lipid bodies, and large numbers of polysaccharide granules in addition to nuclear material and ribosomes. The ultrastructural characteristics of cells in wide filaments were similar, except for increased numbers of carboxysomes and lipid bodies. Heterocytes and proheterocysts developed at a variety of locations in narrow filaments, wide filaments, and the lateral branches off of wide filaments. Akinetes were not observed in any of the filaments. The morphological characteristics of heterocysts and proheterocysts were variable and depended on those of the vegative cells from which the heterocysts and proheterocysts developed. Mature M. laminosus heterocysts were somewhat similar to those formed in other cyanobacterial genera, but they possessed a number of distinct and unique ultrastructural characteristics, including (i) the absence of a fibrous and, possibly, a laminated wall layer, (ii) the presence many closely packed membranes throughout most of the cytoplasm, and (iii) the presence of unidentified, spherical inclusion bodies of variable electron density.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Ground water 21 (1983), S. 0 
    ISSN: 1745-6584
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Geosciences
    Notes: Regions of the earth below the root zone of soil have conventionally been considered void of life. However, widespread pollution of ground water in the U.S. by organic compounds has kindled interest in the numbers of microbes that might be found in aquifers and associated regions of the deeper unsaturated zone, and in their ability to degrade organic pollutants.Newly developed techniques in microbial ecology allow the direct enumeration and examination of soil microbes without recourse to their cultivation on growth media. These techniques reduce many uncertainties associated with the use of culture media, such as the growth of contaminants or the failure of indigenous forms to grow on a particular medium. Samples were recovered aseptically from depths of 1·2, 3·0, and 5·0 meters (m) at the margin of a small floodplain near Lula, Oklahoma. Depth to the water table was 3·6 m; depth to bedrock was 6·0 m. Numbers of microbes were surprisingly similar at all three depths (3 to 9 × 106/g dry material). Although both Gram-positive and Gram-negative bacteria were encountered, small Gram-positive coccoid forms predominated. No protozoa, yeasts, or other fungi were seen. The indigenous bacteria could rapidly degrade toluene. Chlorobenzene was degraded in material from the vadose zone, while bromodichloromethane was degraded in material from the saturated zone. There was no detectable degradation of 1,2-dichloroethane, 1,1,2-trichloroethane, trichloroethylene, or tetrachloroethylene.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Journal of industrial microbiology and biotechnology 16 (1996), S. 189-196 
    ISSN: 1476-5535
    Keywords: biosorption ; subsurface bacterium ; vadose ; cadmium ; cobalt ; nickel ; strontium
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract A subsurface Gram-positive, endospore-forming, filamentous bacterium, designated ZAN-044, was isolated from a depth of 96.2 m in the vadose zone of the Hanford Site in Washington State. A phylogenetic analysis of the 16S rRNA gene sequence of strain ZAN-044 revealed it to be 99.5% similar toBacillus simplex strain DSM 1321, indicating that they may be members of the same species.B. simplex ZAN-044 was studied along withBacillus subtilis 168, andEscherichia coli K-12 (AB264), two well-characterized metal-sorbing bacteria, for the binding of Cd2+, Co2+, Ni2+, and Sr2+. There was rapid (less than 1 h) uptake of 1 μM metal by the three bacteria in the order Cd〉Ni≥Co〉Sr. Binding followed a saturation isotherm at cation concentrations from 0.1 μM to 1 mM. Cation binding was pH-dependent, with less binding at low pH.B. simplex ZAN-044 bound more metal thanB. subtilis orE. coli, demonstrating that subsurface microorganisms can remove significant quantities of metals from solution and may be able to influence radionuclide and metal transport in the subsurface.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Springer
    Journal of industrial microbiology and biotechnology 23 (1999), S. 273-283 
    ISSN: 1476-5535
    Keywords: Keywords: Sphingomonas aromaticivorans; S. stygia; S. subterranea; deep subsurface; aromatic compound; plasmid
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (〉200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteria cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.
    Type of Medium: Electronic Resource
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  • 9
    ISSN: 1572-9699
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Microorganisms were detached and washed from soil by various procedures involving blending and sonication of the soil in water or pyrophosphate solution, followed by successive low-speed, centrifugal-washing separations of the suspended cells from the soil debris. Some of these procedures were previously used for separating and concentrating cells from soil for transmission electron microscopy viewing. Exhaustive applications of these procedures separated up to 27% of the platable cells from the soil. Based on filterability, these cells either were no longer attached to soil particles, or were attached to very small particles. The cells fractionating with the soil debris, however, seemed to be strongly attached to it or to other cells so that they were not filterable. Laboratory-grown cultures added to sterile and non-sterile soil did not attach to the soil materials and were easily recovered from the soil even though low-speed centrifugations were being used. Electron microscopy evidence for cells released and concentrated from non-inoculated natural soil, and for cells remaining with the soil debris, suggests that the very small, probably non-platable, cells tend to release more easily than do cells in the size range of 0.3 to 0.5 μm in diameter, and that cells larger than this, including bacterial and fungal spores, are more difficult to separate from soil. Plating data for heated preparations are in agreement with this for bacterial spores. The results are considered in relation to the validity of plate counts and direct soil transmission electron microscopy for evaluating the microbial flora of soil.
    Type of Medium: Electronic Resource
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