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  • 1
    ISSN: 1432-0983
    Keywords: Key words APS kinase ; ATP sulphurylase ; Aspergillus nidulans ; Allosteric inhibition
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The sD gene of Aspergillus nidulans has been cloned by heterologous screening of rationally selected cosmids. Co-transformation of the sD50 mutant JMP1 confirmed the presence of a functional gene. Sequence analysis determined this gene to be 680 bp in length, containing a 59-bp intron and encoding a protein of 206 amino acids. A protein-sequence comparison revealed a similarity to the C-terminal region of ATP sulphurylase, the sC gene product. Further sequence comparison revealed differences in a consensus sequence ATP-binding motif, indicating non-functionality of the APS kinase-like domain of ATP sulphurylase, and confirms sD as the gene encoding APS kinase in A. nidulans.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 92 (1990), S. 5602-5611 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A simple model is presented to describe a mechanism by which large quanta of vibrational energy may be transferred coherently through a hydrogen bonding network. Exact results and numerical simulations of both the quantum and classical dynamics are presented. The physical context of the model is briefly described and order of magnitude estimates of the energy transfer time scale are discussed.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 87 (1987), S. 5312-5316 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A recently developed classical model for the simulation of overtone dynamics in C6H6 and C6D6, is used to evaluate estimates for the decay times of CH and CD overtones in all deuterated benzenes for which experimental linewidths have been measured. The calculated and inferred decay times are compared for C6H6, C6H5D, p-C6H2D4, C6HD5, and C6D6. Reasonable quantitative agreement between theory and experiment is reported and marked qualitative trends are reproduced.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 93 (1990), S. 7894-7913 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Classical simulations are used to examine vibrational energy redistribution in a chain of hydrogen bonded N-methylacetamide molecules following excitation of a NH stretching mode or Amide-I mode at one end of the chain. The dynamics take place on a complex potential energy surface constructed from ab initio calculations and empirical surfaces, refined with reference to observed vibrational frequencies. Simulations are used to characterize the dynamical effects of variation of several important potential parameters, and to determine the existence of coherent energy transfer by Fermi resonance mechanisms. Results are discussed with reference to simple models.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 86 (1987), S. 6871-6881 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The intermolecular vibrational energy redistribution in high overtones of CH(D) stretching modes in benzene and perdeuterobenzene has been studied using classical trajectories. Using the exact kinetic energy and the best available potential energy surface for planar benzene, the rapid decay of these local modes is calculated to be in reasonable quantitative agreement with experimental lifetimes. The long time dynamics of benzene is found to be characterized by periodic energy transfer between CH stretching local modes via a 2:1 Fermi resonance with normal ring modes. Preferential energy transfer between para CH local modes is observed.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 96 (1992), S. 8450-8453 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 96 (1992), S. 5983-5998 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Classical trajectory calculations of the rate of collisional energy transfer between a bath gas and a highly excited polyatomic method, and the average energy transferred per collision, as functions of the bath gas translational energy and temperature, are reported. The method used is that of Lim and Gilbert [J. Phys. Chem. 94, 72 (1990)], which requires only about 500 trajectories for convergence, and generates extensive data on the collisional energy transfer between Xe and azulene, as a function of temperature, initial relative translational energy (E'T), and azulene initial internal energy (E'). The observed behavior can be explained qualitatively in terms of the Xe interacting in a chattering collision with a few substrate atoms, with the collision duration being much too brief to permit ergodicity but with a general tendency to transfer energy from hotter to colder modes (both internal and translational). At thermal energies, trajectory and experimental data show that the root-mean-squared energy transfer per collision, 〈ΔE2〉1/2, is relatively less dependent on E' than the mean energy transfer 〈ΔE〉.The calculated temperature dependence is weak: 〈ΔE2〉1/2∝T0.3, corresponding to 〈ΔEdown〉∝T0.23. Values for the calculated average rotational energy transferred per collision (data currently only available from trajectories, and required for falloff calculations for radical–radical and ion-molecule reactions) are of the order of kBT, and similar to those for the internal energy; there is extensive collision-induced internal-rotational energy transfer. The biased random walk "model B,'' as discussed in text, is found to be in accord with much of the trajectory data and with experiment. This suggests that energy transfer is through pseudorandom multiple interactions between the bath gas and a few reactant atoms; the "kick'' given by the force at the turning point of each atom–atom encounter governs the amount of energy transferred. Moreover, a highly simplified version of this model explains why average energies transferred per collision for simple bath gases have the order-of-magnitude values seen experimentally, an explanation which has not been provided hitherto.
    Type of Medium: Electronic Resource
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