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  • 1
    ISSN: 1365-2389
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Plant-pathogenic nematodes are a major cause of crop damage worldwide, the current chemical nematicides cause environmental damage, but alternatives such as biological control are less effective, so further understanding of the relationship between nematodes, nematicides, biological control agents and soil and rhizosphere microorganisms is needed.Microbial populations from roots of cabbage and tomato plants infested with the root-knot nematode Meloidogyne incognita were compared with those from plants where the nematode was controlled by the nematicide aldicarb, or a nematophagous fungus with biological control potential, Pochonia chlamydosporia. The total numbers of culturable bacteria and fungi in rhizosphere soil were similar in all three treatments for both plants, around 100-fold more than in control soil in which there were no plants. However, there were clear differences in the catabolic diversity, assessed by Biolog EcoPlate™ carbon substrate utilization assays, between microbial populations from unplanted soil and the rhizosphere. In cabbage, a poor host for M. incognita, the rhizosphere population from P. chlamydosporia-treated plants was distinct from the population from untreated and aldicarb-treated plants. In tomato, a host susceptible to the nematode, the catabolic diversity of populations from aldicarb- and P. chlamydosporia-treated plants was similar and differed from the untreated, nematode-infested plants. The genetic diversity of the fast-growing heterotrophic bacteria in the tomato rhizosphere, indicated by PCR fingerprinting with ERIC primers, was very different in the infested roots, whereas the profiles of isolates from both aldicarb- and P. chlamydosporia-treated roots were similar. Evidently, nematodes have a greater impact on the rhizosphere population of a susceptible host, tomato, than a poor one, cabbage, and nematode-infested roots are colonized by a different subpopulation of soil microbes from that on plants where infection is controlled, illustrating differences in root morphology and physiology.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK; Malden, USA : Blackwell Science Ltd
    European journal of soil science 56 (2005), S. 0 
    ISSN: 1365-2389
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: The effects of past applications of farmyard manure (FYM, applied from 1942 to 1967), metal-contaminated sewage sludge (applied from 1942 to 1961) and mineral fertilizer (NPK, applied from 1942 until now) on the microbial biomass and community structure in a sandy loam, arable soil from the Woburn Market Garden Experiment, UK, were investigated in 1998. Concentrations of Cu, Ni and Zn in soils which previously received sewage sludge were less than current European Union (EU) limits, but the soil Cd concentration was more than twice the permitted limit. Organic-C concentration in the FYM-treated soil and contaminated soils was about twice that of NPK-treated soil. The initial microbial biomass-C and estimates of total bacterial numbers by acridine orange direct count were significantly (P 〈 0.05) greater in the FYM-treated soil compared with the NPK-treated and the most contaminated soils. Total phospholipid fatty acid (PLFA) concentration (another measure of biomass) was significantly greater in the FYM-treated soil compared with either the low or high metal-contaminated soils, both of which contained similar PLFA concentrations. In the metal-contaminated soils, in contrast, fluorescent Pseudomonas counts, as a percentage of total plate counts, were at least 1.5 times greater than in the uncontaminated soils. The concentrations of these microbial parameters were significantly (P 〈 0.05) less in the NPK soil than in all the other treatments. Biomass-C as a percentage of organic-C was also significantly (P 〈 0.05) greater in the uncontaminated soils compared with the metal-contaminated soils. Biomass specific respiration rates in the metal-contaminated soils were c. 1.5 times those in the FYM-treated soil. In the metal-contaminated soils, the concentration of mono-unsaturated and hydroxy-fatty acids (derived from phospholipids), and lipopolysaccharide hydroxy-fatty acids (all indicative of Gram-negative bacteria) were significantly (P 〈 0.05) greater than branched fatty acids (indicative of Gram-positive bacteria). Furthermore, Gram-negative counts were 62–68% greater than Gram-positive counts in the metal-contaminated soils. Branched fatty acid concentration was significantly (P 〈 0.05) greater in the FYM-treated soil than in the metal-contaminated soils. Gram-positive counts were also 63% greater than Gram-negative counts in the FYM-treated soil. We found that effects of the relatively small heavy metal concentration caused measurable decreases in soil microbial biomass-C concentrations, acridine orange direct counts and Gram-positive counts. There were also increases in biomass specific respiration rates, and the microbial community had changed substantially, nearly 40 years after the metal inputs ceased. We conclude that, at the very least, the current EU permitted limits for heavy metals in agricultural soils should not be relaxed.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] In the previous paper7 the insertion of the transposon Tn5 (conferring kanamycin resistance) into the chromosome of strains of Rhizobium was described. Using the same method we attempted to insert Tn5 into pRL1JI, a conjugative plasmid first found in an R. leguminosarum field isolate (strain 248). ...
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Fig. 1 a, The construction of pALlOSO. The part of the T-DNA of pTiAchS present on pOTYS is shown in the bottom right-hand corner. pOTYS was constructed from subclones of BamHl fragment 8 and Hindlll fragment 1, using pJDB 207 as a vector plasmid. For pALlOSO, R772 and pOTYS, the restriction sites ...
    Type of Medium: Electronic Resource
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  • 5
    ISSN: 1617-4623
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Selection was made for the transposition of the kanamycin resistance transposon Tn5 from a location on the chromosome of R. leguminosarum into a transmissible, bacteriocinogenic plasmid that also carries genes required for the induction of nitrogen-fixing nodules on peas. One hundred and sixty independent insertions into transmissible plasmids were isolated. When these plasmids were transferred by conjugation into a non-nodulating strain, which carries a deletion in one of its resident plasmids, of the 160 isolates tested 14 yielded transconjugants that formed nodules that did not fix nitrogen (Fix-) and in a further 15 cases the transconjugants were unable to form nodules (were Nod-). When transferred to a symbiotically proficient strain (i.e. Nod+ Fix+) none of the transconjugants was symbiotically defective; thus the mutations were not dominant. When kan was transduced from the clones that generated Fix- transconjugants into a Fix+ recipient the majority of transductants inherited Fix- indicating that the insertion of Tn5 had induced the symbiotic mutations. Transduction of kan, from the clones that failed to donate Nod+ by conjugation to strain 6015, occurred at barely detectable frequencies and it was not possible to demonstrate transduction of Nod-. kan was co-transduced with Nod+ from some of the clones and some of these transductants also inherited the ability to produce medium bacteriocin and to transfer at high frequency by conjugation. Thus the genes for all these characters are closely linked.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Molecular genetics and genomics 195 (1984), S. 209-214 
    ISSN: 1617-4623
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A section of the octopine Ti plasmid pTiACH5 including the region always integrated in crown gall tumour cells (the TL-DNA) was cloned into the yeast — E. coli shuttle vector pJDB207. This plasmid, pOTY8, was transformed into S. cerevisiae where transcription of the T-DNA was demonstrated, but there was no evidence for the production of octopine synthetase. The TL-DNA was cloned into a derivative of pJDB207 unable to replicate in yeast, but the TL-DNA did not appear to contain any autonomously replicating sequences (ars) functional in yeast.
    Type of Medium: Electronic Resource
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