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  • 1
    ISSN: 1432-1211
    Keywords: MHC class I Peptide Library Prediction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract. Specificities of three mouse major histocompatibility complex (MHC) class I molecules, Kb, Db, and Ld, were analyzed by positional scanning using combinatorial peptide libraries. The result of the analysis was used to create a scoring program to predict MHC-binding peptides in proteins. The capacity of the scoring was then challenged with a number of peptides by comparing the prediction with the experimental binding. The score and the experimental binding exhibited a linear correlation but with substantial deviations of data points. Statistically, for approximately 80% of randomly chosen peptides, MHC-binding capacity could be predicted within one log concentration of peptides for a half-maximal binding. Known cytotoxic T-lymphocyte epitope peptides could be predicted, with a few exceptions. In addition, frequent findings of MHC-binding peptides with incomplete or no anchor amino acid(s) suggested a substantial bias introduced by natural antigen processing in peptide selection by MHC class I molecules.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1573-3904
    Keywords: alamethicin ; circular dichroism ; ELISA ; hepatitis C ; spacer ; tetraethylene glycol
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Summary New hydrophilic linkers of the formula Fmoc-NHCH2CH2COO(CH2CH2O)4X (X=COCH2CH2COOH Fmoc-Ats (2), X=CONHCH2COOH Fmoc-Atg (4) and X=CONHCH2CH2COOH Fmoc-Ata (5) have been prepared by heterobifunctional modification of tetraethylene glycol as starting material. These linkers represent a useful tool for solid phase peptide synthesis according to Fmoc/tBu strategy. Two examples are presented to illustrate the applicability of these building blocks: (i) spacing between biotin and a peptide epitope of the hepatitis C virus and evaluation in a biotin-streptavidin ELISA, and (ii) coupling of the new linker to the N- and C-terminus of the peptide antibiotic alamethicin to show eventual influences on the peptide's α-helical conformation.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    International journal of peptide research and therapeutics 6 (1999), S. 143-149 
    ISSN: 1573-3904
    Keywords: lactose permease ; neoglycopeptide ; 1-thio-β-D-galactoside ; transport inhibition
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract A new neoglycopeptide was synthesized and tested for its capability to bind to lactose permease of Escherichia coli and to inhibit the transport of lactose. The free 5′- carboxypentyl-1-thio-β-D-galactopyranoside or the protected 2,3,4,6-tetra-O-acetyl-5′-carboxypentyl-1-thio-β-D- galactopyranoside was linked to the N-terminal α-amino group of the resin bound heptapeptide H-Phe-Phe-Gly-Gly-Gly-Gly-Ala-OH by different activation methods. Upon cleavage from the resin, deacetylation and purification, a neoglycopeptide which showed a significant inhibition of lactose permease was obtained.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1573-3904
    Keywords: alamethicin ; circular dichroism ; ELISA ; hepatitis C ; spacer ; tetraethylene glycol
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract New hydrophilic linkers of the formula Fmoc- NHCH2CH2COO(CH2CH2O)4X (X = COCH2CH2COOH Fmoc-Ats (2), X = CONHCH2COOH Fmoc-Atg (4), and X = CONHCH2CH2COOH Fmoc-Ata (5)) have been prepared by heterobifunctional modification of tetraethylene glycol as starting material. These linkers represent a useful tool for solid phase peptide synthesis according to Fmoc/tBu strategy. Two examples are presented to illustrate the applicability of these building blocks: (i) spacing between biotin and a peptide epitope of the hepatitis C virus and evaluation in a biotin- streptavidin ELISA, and (ii) coupling of the new linker to the N- and C-terminus of the peptide antibiotic alamethicin to show eventual influences on the peptide's α-helical conformation.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    International journal of peptide research and therapeutics 6 (1999), S. 143-149 
    ISSN: 1573-3904
    Keywords: lactose permease ; neoglycopeptide ; 1-thio-β-d-galactoside ; transport inhibition
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Summary A new neoglycopeptide was synthesized and tested for its capability to bind to lactose permease ofEscherichia coli and to inhibit the transport of lactose. The free 5′-carboxypentyl-1-thio-β-d-galactopyranoside or the protected 2,3,4,6-tetra-O-acetyl-5′-carboxypentyl-1-thio-β-d-galactopyranoside was linked to the N-terminal α-amino group of the resin bound heptapeptide H-Phe-Phe-Gly-Gly-Gly-Gly-Ala-OH by different activation methods. Upon cleavage from the resin, deacetylation and purification, a neoglycopeptide which showed a significant inhibition of lactose permease was obtained.
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 0947-6539
    Keywords: binding assays ; immunosensors ; electrochemical polymerisations ; peptide derivatives ; peptide immobilisation ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: For the first time, antigenic peptides have been immobilised by electrochemical polymerisation after having been modified with a polymerisable functional group. 3-Hydroxyphenylacetic acid was chosen as the novel polymerisable group. The synthetic peptides represent epitopes of the bovine foot and mouth disease virus and of the sodium channel of the cardiac muscle. The polymerisation was performed by applying a constant anodic potential or by cyclic voltammetry. A combination of these two methods was also employed, that is, cyclic voltammetry with a delay at the anodic vertex potential. No additional free phenolic monomer was required for the polymerisation. The layers formed by the polymerisation were recognised by specific antibodies. The specific binding of the antibodies to the polymer film could be demonstrated by ELISA, an enzyme-linked amperometric immunoassay, and electrochemical impedance measurements, as well as by fluorescence-labelled antibodies. A peptide derived from laminine was also immobilised by electrochemical polymerisation. It could be shown that neuroblastoma cells adhere to this layer.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
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