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  • 1
    Electronic Resource
    Electronic Resource
    Effect of bulk density on the spatial organisation of the fungus Rhizoctonia solani in soil (2003)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 44 (2003), S. 0 
    Details
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The mycelial growth form of eucarpic fungi allows for a highly effective spatial exploration of the soil habitat. However, understanding mycelial spread through soil has been limited by difficulties of observation and quantification of fungi as they spread through this matrix. We report on a study on the effects of soil structure by altering the soil bulk density, on the spatial exploration of soil by the fungus Rhizoctonia solani using a soil thin-sectioning technique. First we quantified fungal densities in microscopic images (0.44 mm2). At this scale, hyphae were either absent, or present as minor fragments, typically occupying less than 1% surface area of the thin section. From contiguous microscopic images we then produced large-scale (6.21 cm2) spatial distribution maps of fungal hyphae. These maps were superimposed onto soil structural maps, which quantify the degree of porosity in each microscopic image. Alterations in soil structure by changing the bulk density are shown to affect the distribution of the fungus within the soil. The volume of soil explored by the fungus increased with increasing bulk density. This was associated with a shift from a few large pore spaces to more evenly distributed small-scale pores. Fungal hyphae were present in all porosity classes within each bulk density, including areas that contain less than 5% visible pore space. However, fungal hyphae were more often found in areas with a higher porosity, in particular at low soil bulk densities. The results show that soil structure is a major component in the spatial exploration of soil by fungi.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6941.2003.tb01089.x
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  • 2
    Electronic Resource
    Electronic Resource
    Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil (2003)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 44 (2003), S. 0 
    Details
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Biological soil thin-sections and a combination of image analysis and geostatistical tools were used to conduct a detailed investigation into the distribution of bacteria in soil and their relationship with pores. The presence of spatial patterns in the distribution of bacteria was demonstrated at the microscale, with ranges of spatial autocorrelation of 1 mm and below. Bacterial density gradients were found within bacterial patches in topsoil samples and also in one subsoil sample. Bacterial density patches displayed a mosaic of high and low values in the remaining subsoil samples. Anisotropy was detected in the spatial structure of pores, but was not detected in relation to the distribution of bacteria. No marked trend as a function of distance to the nearest pore was observed in bacterial density values in the topsoil, but in the subsoil bacterial density was greatest close to pores and decreased thereafter. Bacterial aggregation was greatest in the cropped topsoil, though no consistent trends were found in the degree of bacterial aggregation as a function of distance to the nearest pore. The implications of the results presented for modelling and predicting bacterial activity in soil are discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1016/S0168-6496(03)00027-8
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  • 3
    Electronic Resource
    Electronic Resource
    Negative fungal chemotropism to toxic metals (2000)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 193 (2000), S. 0 
    Details
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Hyphal growth responses of Geotrichum candidum, Gliocladium roseum, Humicola grisea and Trichoderma viride to Cu and Cd were studied using a simple tessellated agar tile system. Negative chemotropic behaviour of hyphae, which included curling and growth away from metal-containing domains, occurred in all species and with both metals. Both toxic metal and sucrose concentrations in the medium modulated the magnitude of the negative chemotropic effects observed. In general, greater concentrations of metals led to a higher level of negative chemotropism in response to Cu and Cd, which could be reduced with increasing concentrations of sucrose in the medium. This suggests that resource availability affects the ability of these fungi to grow into metal-laden domains.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6968.2000.tb09425.x
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  • 4
    Electronic Resource
    Electronic Resource
    Nutritional influence on fungal colony growth and biomass distribution in response to toxic metals (2001)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 204 (2001), S. 0 
    Details
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: This work examines nutritional influence on fungal colony growth and biomass distribution in response to toxic metals. In low-substrate solid medium, 0.1 mM Cd, Cu and Zn caused a decrease in radial expansion of both Trichoderma viride and Rhizopus arrhizus. However, as the amount of available carbon source (glucose) increased, the apparent toxicity of the metals decreased. These metals also affected the overall length of the fungal mycelium and branching patterns. In low-nutrient conditions, T. viride showed a decrease in overall mycelial length and number of branches in response to Cu, resulting in an extremely sparsely branched colony. Conversely, although Cd also reduced overall mycelial length to about one-third of the control length, the number of branches decreased only slightly which resulted in a highly branched colony with many aberrant features. Cu and Cd induced similar morphological changes in R. arrhizus. A large-scale mycelial-mapping technique showed that disruption of normal growth by Cu and Cd resulted in altered biomass distribution within the colony. When grown on metal-free low-substrate medium, T. viride showed an even distribution of biomass within the colony with some allocation to the periphery. However, Cu caused most of the biomass to be allocated to the colony periphery, while in the presence of Cd, most biomass was located at the interior of the colony. These results imply that such alterations of growth and resource allocation by Cu and Cd may influence success in locating nutrients as well as survival, and that these metals have individual and specific effects on the growing fungus.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6968.2001.tb10903.x
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  • 5
    Electronic Resource
    Electronic Resource
    Changes to water repellence of soil caused by the growth of white-rot fungi: studies using a novel microcosm system (2000)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 184 (2000), S. 0 
    Details
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: A microcosm system is described which permits assessment of the progressive growth of filamentous fungi through soil. We report on its application to measure the effects of Coriolus versicolor and Phanerochaete chrysosporium upon the sorptivity and water repellence of a mineral soil, measured using a miniature infiltration device. Both fungal species caused moderate sub-critical repellence. Since the pore structure was unaffected, the repellence was probably due to hydrophobic substances of fungal origin. This is the first report of changes in soil repellence caused by the growth of potential xenobiotic bioremediating fungi. The potential consequences are discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6968.2000.tb08993.x
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  • 6
    Electronic Resource
    Electronic Resource
    Solubilization of calcium phosphate as a consequence of carbon translocation by Rhizoctonia solani (2002)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 40 (2002), S. 0 
    Details
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: A model system based on arrays of three concentric rings of discrete agar droplets is described which allowed study of fungal growth in vitro in nutritionally-heterogeneous conditions. Droplets containing different combinations of glucose and calcium phosphate were used to study the consequences of spatially separating these components in relation to metal phosphate solubilization by Rhizoctonia solani. A pH indicator, bromocresol purple, was added to the agar to visualise the localised production of acidity by the fungus. In the presence of the fungus, solubilization of calcium phosphate on homogeneous agar plates only occurred when glucose was present in the underlying medium. However, solubilization occurred in droplets containing calcium phosphate, but no glucose, when glucose was present in other droplets within the tessellation and where fungal hyphae spanned the droplets. This demonstrates that substrate was transported via mycelia from glucose-containing domains, with the functional consequence of metal phosphate solubilization. In another design, where the inner ring of droplets contained glucose and the outer ring contained only calcium phosphate, acidification of all droplets in the outer ring was observed when the inner droplets contained glucose. However, solubilization of calcium phosphate only occurred when the concentration of glucose in the inner droplets was greater than 2% (w/v). This indicated that a threshold concentration of carbon source may be required before such mechanisms of solubilization are invoked. There was also evidence for reverse translocation of substrate from newly colonised glucose-containing droplets in the outer ring to the central droplets, where fungal growth had originated.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6941.2002.tb00937.x
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  • 7
    Electronic Resource
    Electronic Resource
    Interspecific fungal interactions in spatially heterogeneous systems (1998)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 27 (1998), S. 0 
    Details
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The community dynamics of two- and three-fungal species interactions derived for a tessellated agar model system are described. The microcosm allows for the varied prescription of: (1) the number of fungal species interacting; (2) the spatial configuration (patchiness) of the distribution of individuals; (3) the magnitude of scale of spatial occupation by different fungal individuals; and (4) the operation of antagonistic mechanisms based on contact or longer range diffusible components. Stepwise logistic regressions for two-species interactions are used to inform the design of the multi-species interaction tessellations. The model prescribes and investigates complex parameters, such as spatiotemporal heterogeneity and microcosm scale (e.g. population patchiness and crossing times). Data are quantified as proportion, interface class and state transition class of viable fungal species. Spatiotemporal heterogeneity is represented using a novel application of principal component analysis which shows good intuitive agreement with visual assessment of the interaction outcome patterns, and allows effective comparison of the data as a whole. The model demonstrates the influence of the complex and coordinated behaviour of fungal mycelia on community development: interaction outcome of three-species interactions cannot be directly extrapolated from the relevant binary component interactions; interaction outcomes of the multi-species tessellations appears to be neither random nor fully deterministic; a degree of stochasticity is apparent in all tessellation arrangements; the smaller scale tessellations produce more consistent interaction outcome results, probably because experimental scale affects the duration of transient behaviour; and different initial spatial configurations of inoculum (irrespective of inoculum quantity or proportion) influence community development and reproducibility.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6941.1998.tb00522.x
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  • 8
    Electronic Resource
    Electronic Resource
    Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil (2001)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 37 (2001), S. 0 
    Details
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: A method for determining the number and in situ spatial distribution of bacterial cells over spatial scales ranging from micrometres to centimetres in mineral soils is described. Biological thin sections of undisturbed cores of soil were prepared in order to preserve the spatial distribution of bacterial cells. Composite (tessellated) images in which individual bacteria can be resolved within an area of 0.282 mm2 were acquired by means of a motorised scanning microscope stage. An image processing and analysis procedure was developed to determine the numbers and locations of bacterial cells in the composite images. The image processing procedure first homogenised the background of the images and then discriminated between bacteria and non-bacterial features using the colour and morphological properties of the images of the bacterial cells. Feature edges were detected in the green channel of colour (red, green, blue) images and bacterial cell edges were confirmed in the blue channel after elimination of autofluorescent features in the red channel. No significant difference was found between the number of bacteria or associated distributions determined automatically and control values derived interactively on individual fields of view. Data relating to total bacterial counts in thin sections and in paired dispersed samples suggested that all soil bacteria were being visualised in thin sections. Significant differences between samples taken from a depth profile of a fallow arable soil were found for both cell numbers and for cell distribution as measured by an index of dispersion.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6941.2001.tb00854.x
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  • 9
    Electronic Resource
    Electronic Resource
    Growth responses of some soil fungi to spatially heterogeneous nutrients (1995)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 16 (1995), S. 0 
    Details
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract The natural nutritional environments of most fungi are spatially non-uniform, yet the majority of studies of fungal growth take no account of this fact. An experimental system is described which permits the growth responses of eucarpic fungi to heterogeneously distributed nutrient resources to be studied. The system comprises tesselations of agar tiles of contrasting nutrient status separated by air gaps. Growth responses in such systems of Alternaria alternata, Mucor sp., Phoma foveata, Rhizoctonia solani and Trichoderma viride are described. Generally, the growth of the fungi reflected the nutrient status of the underlying substrate. There was evidence for growth in low-nutrient tiles being greater when high-nutrient tiles were included in the tessellation. Reproductive structures tended to be formed only in low nutrient tiles with Trichoderma and Rhizoctonia and only high nutrient tiles with Alternaria. Growth responses of Rhizoctonia were strongly asymmetric in nutritionally symmetric, but heterogeneous, tesselations. The consequences of the observations for fungal growth in heterogeneous environments such as soil is discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6941.1995.tb00291.x
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  • 10
    Electronic Resource
    Electronic Resource
    The effects of fungal inoculum arrangement (scale and context) on emergent community development in an agar model system (2002)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 39 (2002), S. 0 
    Details
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Consequences of initial spatial organisation of model fungal communities upon their spatio-temporal development were investigated. Dynamics of prescribed two- and three-species ‘communities’ developing on tessellated agar tile model systems were analysed in terms of literal maps, principal component analyses, or as the proportion of species extant within tiles. It was established that for two-species interactions of equal patch size, large-scale (i.e. many constituent tiles) behaviour could be extrapolated from the relevant small-scale (i.e. pairs of tiles) interactions. However, relative patch sizes (scale) of species within tessellations influenced the times taken by individuals to colonise tiles and, hence, temporal behaviour of the system. Outcome of arrangements involving three species of equal patch size and inoculum potential, and prescribed with different mixing patterns, could not be directly extrapolated by reference to the outcome of pair-wise interactions between constituent species. Three-species arrangements attempt to limit assembly of lateral aggregates of individuals (patch size) and hence any effects of tile colonisation times, so as to reveal effects of nearest neighbour context within the complex community. Such arrangements indicate that spatial configuration of inoculum influences community development and reproducibility. They also suggest that spatial distribution of species affects persistence of individuals, which would otherwise be expected to be eliminated from the system. Two-species interactions appeared generally more reproducible than those comprising three species, and the sensitivity of fungal community development to temperature was not solely associated with influence on colony extension rate.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1574-6941.2002.tb00901.x
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