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  • 1
    ISSN: 1520-510X
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 56 (2000), S. 1027-1029 
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: Feruloyl esterases cleave ferulic acid from arabinoxylan and pectin. Feruloyl groups are believed to crosslink the polysaccharide chain within the polymer and to link hemicellulose to lignin, which may play a role in controlling the growth of plants. The Clostridium thermocellum cellulosome xylanase Z feruloyl esterase was expressed in Escherichia coli, purified and crystallized. The crystals diffract to 2.4 Å resolution and belong to the orthorhombic space group P212121, with unit-cell parameters a = 43.14, b = 63.77, c = 79.57 Å. Assuming one molecule per asymmetric unit, the Matthews coefficient is calculated to be 1.87 Å3 Da−1, which corresponds to a solvent content of 34%.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 55 (1999), S. 1188-1192 
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: DNA-dependent RNA polymerase is the key enzyme responsible for the biosynthesis of RNA, a process known as transcription. This process, which decodes the genetic information from DNA, is one of the most significant events in a biological system. The crystallization of both native and a chimeric T7/T3 RNAP using high-salt conditions has been reported previously but these conditions proved unsuitable for DNA–RNAP complex formation since at high-salt concentrations the DNA binding affinity to RNAP is reduced. A search for low-salt crystallization conditions has yielded new low-salt crystals of native T7-RNAP, a chimeric T7-RNAP (T7/T3 RNAP) which contains the T3 promoter recognition sequence, and a T7-RNAP containing an N-terminal histidine tag. The crystals, which are better suited for DNA–RNAP complex formation, belong to space group P3121 with a = 136, c = 156 Å, contain a single molecule per asymmetric unit and diffract to 2.7 Å resolution. Packing analysis shows that the new low-salt crystals have packing contacts similar to those observed in the high-salt T7-RNAP crystals reported previously. The diffraction anisotropicity observed in crystals of T7 RNAP is explained in term of crystal packing.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 55 (1999), S. 1201-1203 
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: Ferrochelatase (protoheme ferrolyase, E.C. 4.99.1.1), the terminal enzyme in the heme biosynthetic pathway, catalyzes the insertion of ferrous iron into protoporphyrin IX to form protoheme. In eukaryotes, the protein is associated with the inner surface of the inner mitochondrial membrane, and in higher animals the enzyme contains a [2Fe–2S] cluster. This cluster is highly sensitive to NO and is coordinated by four Cys residues whose spacing in the primary sequence is unique. Ferrochelatase from Drosophila melanogaster has been expressed in Escherichia coli with an amino-terminal six-histidine tag and purified to homogeneity. The protein has been crystallized with the [2Fe–2S] cluster intact. The crystals belong to space group I422, with unit-cell dimensions a = b = 158.1, c = 171.2 Å and two molecules in the asymmetric unit, and diffract to 3.0 Å resolution.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 56 (2000), S. 902-903 
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: Eukaryotic mitochondria contain a distinct mini-chromosome. In yeast, transcription of the mitochondrial genome is mediated by a nuclear-encoded RNA polymerase consisting of a single polypeptide core enzyme and a specificity factor termed sc-mtTFB which bears some similarity to bacterial σ-factors. sc-mtTFB from Saccharomyces cerevisiae has been cloned, expressed, purified and crystallized. The crystals belong to the monoclinic space group C2, with unit-cell parameters a = 89.7, b = 44.6, c = 98.9 Å, β = 110°. Based on one molecule per asymmetric unit, the solvent content is estimated to be 48%. Small crystals of dimensions 0.01 × 0.05 × 0.13 mm diffract to at least 2.7 Å resolution on a rotating-anode X-ray source.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 57 (2001), S. 1639-1642 
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: The implantation of animal organs is one approach to overcoming the shortage of human donor organs for medical transplantation. Although readily available, non-primate tissues are subject to hyperacute rejection wherein human anti-Galα(1–3)Gal antibodies react with haptens present on the transplanted cells' surfaces. The understanding of this interaction on a molecular level will further the development of a strategy for the prevention of hyperacute rejection in xenotransplantation. The Galα(1–3)Gal hapten (`xenograft antigen') has been cocrystallized with the Gal-specific B4 isolectin of Griffonia simplicifolia lectin-1. Crystals were analyzed by cryocrystallography and were found to diffract to moderately high resolution on a rotating-anode X-ray source. They belong to the P21212 space group, with unit-cell parameters a = 111.0, b = 51.3, c = 76.9 Å, and contain two molecules per asymmetric unit.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 103 (1995), S. 7255-7268 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: This paper reports on a classical phase space bifurcation analysis of the 2345 Fermi resonance of acetylene. The 2345 Fermi resonance is a multimode nonlinear, resonance coupling that is important to the vibrational dynamics and energy flow of highly excited acetylene. The bifurcation analysis is performed on an integrable Hamiltonian that represents a planar five-mode model of acetylene in which the ν2, ν3, ν4, and ν5 vibrational modes are nonlinearly coupled through the 2345 Fermi resonance. The phase space structures of the 2345 Fermi resonance are shown to be analogous to but more complicated than phase space structures of the two-mode, 1:1 and 2:1 Fermi resonance. The results are presented in terms of bifurcation diagrams and molecular catastrophe maps. The bifurcation analysis of this multidimensional system with a complicated multimode resonance is a step beyond the simple integrable, resonantly coupled two-mode systems that are now well understood. Analysis of this integrable system also represents a necessary step toward using a multiresonance, i.e., "chaotic'' model to decipher the vibrational spectra of highly excited acetylene, based on knowledge of the anharmonic modes born from bifurcations of the low-energy normal modes. © 1995 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 105 (1996), S. 10743-10754 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The bending dynamics of acetylene are analyzed starting from spectroscopic fitting Hamiltonians used to fit experimental spectra. The possibility is considered of a transformation in the dynamics from normal to local bending modes, as well as a new kind of correlated bending motion called precessional modes. The spectroscopic fitting Hamiltonian of C2H2 is discussed with particular attention to the coupling interactions present due to Fermi and Darling–Dennison resonances. It is argued that for analysis of experiments in which the energy is initially placed in the bends, many couplings can be neglected. Of the remaining couplings, that responsible for the primary pathway of energy transfer out of the bends is a single Darling–Dennison coupling between the bends. A Hamiltonian containing this coupling alone is analyzed to isolate the bending dynamics involved in the primary energy transfer pathway. The anharmonic modes born in bifurcations from the low-energy normal modes are determined from analysis of the classical form of the Hamiltonian. In addition to the usual normal modes, local and precessional modes are found. Precessional modes have relative phases of π/2 or 3π/2, with one local bend fully extended while the other has maximal velocity. Sets of levels or "polyads'' with the same total number of bend quanta are plotted in phase space on the polyad phase sphere, allowing a determination of the normal, local, or precessional character of a given quantum state. It is determined that local modes are found in the experimentally observed bend polyads with P≥14, and precessional modes are found in the polyads P≥20. Polyads are classified on the molecular catastrophe map according to their structure of normal, local, and precessional modes. Energy level spacing patterns within a polyad, shown previously to be characteristic of phase space bifurcation structure, are determined and correlated with the phase sphere. A diabatic correlation diagram analysis, previously applied to H2O, is suggested to extend the analysis here of normal, local, and precessional bending states to the full multiresonance, chaotic spectral fitting Hamiltonian. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 105 (1996), S. 7348-7363 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: An approach for classifying and organizing spectra of highly excited vibrational states of molecules is investigated. As a specific example, we analyze the spectrum of an effective spectroscopic fitting Hamiltonian for H2O. In highly excited spectra, multiple resonance couplings and anharmonicity interact to give branching of the N original normal modes into new anharmonic modes, accompanied by the onset of widespread chaos. The anharmonic modes are identified by means of a bifurcation analysis of the spectroscopic Hamiltonian. A diabatic correlation diagram technique is developed to assign the levels with approximate "dynamical'' quantum numbers corresponding to the dynamics determined from the bifurcation analysis. The resulting assignment shows significant disturbance from the conventional spectral pattern organization into sequences and progressions. The "dynamical'' assignment is then converted into an assignment in terms of "nominal'' quantum numbers that function like the N normal mode quantum numbers at low energy. The nominal assignments are used to reconstruct, as much as possible, an organization of the spectrum resembling the usual separation into sequences and progressions. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 98 (1993), S. 3246-3261 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Binary clusters, notably salt clusters with their combination of attractive and repulsive long-range forces, exhibit structural and dynamical behavior different from that of homogeneous clusters. The melting and freezing, nonwetting, and the complexity of the potential surface of (KCl)32 are used to make the comparison. A new method to estimate the density of configurational states is described and applied to the evaluation of thermodynamic properties of (KCl)32. In particular, with this new method we compute for several temperatures the fraction or probability, P(φ,β), of clusters vibrating around a configuration with minimum energy φ. The behavior of P(φ,β) with temperature T is indicative of a coexistence of solidlike and liquidlike forms of (KCl)32 for a range of temperatures. The input data required by this new method can be obtained from constant temperature molecular dynamics simulations.
    Type of Medium: Electronic Resource
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