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  • 1995-1999  (1,140)
  • 1890-1899  (6)
  • 1850-1859
  • 1997  (1,140)
  • 1896  (6)
  • Theoretical, Physical and Computational Chemistry  (699)
  • Cell & Developmental Biology  (447)
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  • 1995-1999  (1,140)
  • 1890-1899  (6)
  • 1850-1859
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  • 101
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 65 (1997), S. 679-688 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations, including the electron correlation effects via the Møller-Plesset partitioning, of the static longitudinal polarizability (αL), first and second hyperpolarizabilities (βL and γL) of small push-pull molecules have been carried out with the 6-31G and 6-31G* basis sets. Two types of conjugated segment (polyacetylene and polyyne) were used as linker between the nitro and amino fragments, chosen as acceptor and donor groups. For small chains, the triply bonded structures lead to larger γL than the doubly bonded structures, although the αL and βL values order in the opposite direction. The second-order Møller-Plesset (MP2) corrections are essential to obtain correct estimates of the hyperpolarizabilities and are generally much larger than the MP3 and MP4 contributions. Geometry optimizations were carried out with both basis sets within the Hartree-Fock and MP2 schemes; the MP2 geometries lead to smaller bond length alternations and thus larger (hyper)polarizabilities. For αL a careful choice of the geometry is more crucial than the use of polarization functions during the electronic state calculations; however, for the hyperpolarizabilities, both the geometry and the basis set are of importance.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 679-688, 1997
    Additional Material: 3 Ill.
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  • 102
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electronic structures and properties of carbides MC, M5C (M=Fe, Ni, Cu), and TiC and Ti7C were studied using density functional methods (DF), particularly the local density approach (LDA) with the Vosko-Wilk-Nusair (VWN) correlation functional, the generalized gradient approximation (GGA) of Becke and Perdew (using Becke's 1988 exchange functional and Perdew's 1986 correlation functional - BP86), and the ADF program of Baerends et al. In the first part of this report, we studied equilibrium geometries and dissociation energies for the process MC→M+C involving the doublet ground state for M=Cu, singlet and triplet states for M=Ni, and triplet and quintuplet states for M=Fe, Ti. Charge distributions by population analysis, dipole moments, and vibrational frequencies were also evaluated. All calculations were done using triple-zeta basis sets, with frozen-core orbitals and the GGA corrections. In the second part of this report, we consider the doublet states of Cu5C and singlet and triplet states of Ni5C, taking planar and nonplanar models for the M5 clusters. The triplet and quintuplet states of Fe5C were studied with a nonplanar model for the Fe5 cluster, whereas in the case of the triplet and quintuplet states of Ti7C, a Ti7 planar model was chosen. Optimization of the position of the C atom in the cluster, dissociation energies, distribution of charges in the molecule, and dipolar moments were also analyzed, and comparisons with the results obtained for the corresponding carbides (MC) were made. These results, together with the ones of the corresponding carbonyls - that have previously been done by the same methodology - provide us with an interesting comparison of the M(SINGLE BOND)C bond dissociation energy in carbides and carbonyls. Calculations of the C(SINGLE BOND)O bond dissociation energies for the MCO and MnCO compounds were also performed.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 919-928, 1997
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  • 103
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 62 (1997), S. 167-169 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown that if a pair of alternant molecules are isospectral (they have identical energy spectra) in the topological - Hückel - approximation they are also isospectral, taking into account the electron correlation. The proof is given in the AMO approximation using a Hubbard Hamiltonian. © 1997 John Wiley & Sons, Inc.
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  • 104
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    International Journal of Quantum Chemistry 63 (1997), S. 537-546 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The correlation between intramolecular bond length and vibrational frequency shifts was calculated at the MP4(aug-cc-PVTZ) ab initio level for a number of molecules (LiH, BH, HF, OH-, HDO, BF, CN-, and HCI) exposed to uniform electric fields in the range from -0.10 to +0.10 au. The “ω vs. re” correlation curves always consist of two branches, each approximately linear. The slopes for the molecules investigated here vary between -2500 and -16600 cm-1/Å. The slopes are well described by an expression containing only the free-molecule second- and third-order force constants and the reduced mass for the stretching mode. Experimental data for polar molecules can be expected to show deviations from a linear “ω vs. re” correlation (i) for molecules where the maximum of the frequency vs. field curve occurs at a positive field and (ii) for molecules where the maximum of the frequency vs. field curve falls on the negative-field side but very close to the zero-field case, and (iii) in bonding situations when there is much electron overlap. As opposed to uniform-field situations, anharmonicity and electronic overlap have a substantial influence on the “frequency vs. re” slopes in molecular environments. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 537-546, 1997
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  • 105
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 63 (1997), S. 575-583 
    ISSN: 0020-7608
    Keywords: iodine compounds ; DFT ; Mössbauer ; isomer shifts ; nuclear quadrupole resonances ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present work we show the first application of density functional theory (DFT) with gradient-corrected exchange-correction functionals within the linear combination of Gaussian-type orbitals (LCGTO) formalism to the calculation of isomer shifts and quadrupole couplings for a large and varied set of iodine compounds: I2, ICl, IBr, ICN, HI, KI, CH3I, CH2I2, CHI3, CI4, SiI4, GeI4, and SnI4. The results are compared with experimental data from Mössbauer spectroscopy. The overall agreement with experiment is most satisfactory, with the exception of the highly dipolar systems ICl, IBr, and ICN. For these systems it is believed that the free molecule assumption of the calculations is not an entirely valid model of the crystalline environment of the experiments. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 575-583, 1997
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  • 106
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    International Journal of Quantum Chemistry 63 (1997), S. 623-629 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the spirit of Jean-Louis Calais's endeavor to effectively combine the tools of quantum chemistry and solid-state physics to study the electronic structure of materials, Hartree-Fock calculations of core-level binding energy shifts in Li chains and Li slabs and their relation to surface effects, charge oscillations, and dimensionality of a system are presented. For the one-dimensional system the 1s binding energy oscillates regularly from the edge Li atom to the center, the 1s level of the edge atom being shifted to a larger binding energy. For two-dimensional Li slabs which model the (001) surface of Li, the 1s level of the top layer atom is found to have the largest binding energy, being ∼ 0.5 eV below the 1s levels of the other layers, and the binding energy is constantly decreasing from the surface to the bulk, independent of the charge population and without oscillations. Both Mulliken population analysis and charge difference plots indicate that the edge atom in the chain is positively charged, whereas the surface atoms in the slab are negatively charged. This shows that a positive or negative net valence population alone does not determine the direction of the shifts. The predicted core-level binding energy shifts should be observable with high-resolution synchroton measurements. The distinct differences predicted for core-level shifts for one- and two-dimensional systems can be used to characterize and probe the geometry of nanostructures. © 1997 John Wiley & Sons, Inc.
    Additional Material: 4 Ill.
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  • 107
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    International Journal of Quantum Chemistry 63 (1997), S. 655-665 
    ISSN: 0020-7608
    Keywords: polyacetylene ; alkali-doped ; spectrum ; calculation ; semiconductor-metal transition ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A local model is set up for the conductivity in alkali-doped polyacetylene (PA) based on results of ab initio and semiempirical calculations. At low doping levels, solitons and polarons appear naturally in the (nondegenerate) ground state. Alkali atoms donate their valence electrons to neutral solitons, which have the highest electron affinity in the PA structure. Due to the high polarizability of the PA chains, there is a charge buildup on a few carbon atoms close to the alkali ion. At the same time, a new soliton, screened from the alkali ion, is formed some distance away from the latter. This solition may migrate through the PA polymer partly by hopping for one chain segment to another (Ea ≥ 0.15 eV) and partly by soliton motion. In the calculation of the spectra, we used geometry-optimized structures and configuration interaction (i.e., taking into account electron-lattice interaction and explicit Coulomb correlation) and obtained good agreement with experimental spectra. As the concentration of alkali is increased, absorption occurs at energies below 1 eV. At higher doping levels, corresponding to a few mol%, the electrons delocalize over many alkali spacings and the trapping capability of the polymer decreases the conductivity becomes bandlike. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 655-665, 1997
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  • 108
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    International Journal of Quantum Chemistry 63 (1997), S. 709-718 
    ISSN: 0020-7608
    Keywords: Fourier space ; band structure ; density of states ; lattice summations ; RHF metallic solution ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Minimal basis-set STO-3G calculations on the infinite metallic chain of lithium atoms, (SINGLE BOND Li SINGLE BOND)x, performed within the Fourier space-restricted Hartree-Fock approach (FS-RHF), are reported to illustrate that the Fourier representation method, in which all lattice summations are accurately carried out to infinity, is able to reproduce the genuine features of the RHF approach for the metallic cases, i.e., the vanishing of the density of states at the Fermi energy. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 709-718, 1997
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  • 109
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    International Journal of Quantum Chemistry 63 (1997), S. 719-728 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A direct full configuration interaction approach, previously used for studying individual low-lying eigenvalues, is combined with iterative Lanczos calculations, in order to obtain global properties of large Hermitean Hamiltonian matrices. To this effect systematic generation of random start vectors is used to compute statistical approximations to the density of states (DOS). Applications for cyclic polyenes in order to illustrate the viability of the scheme modeled by correlated, high-binding Pariser-Parr-Pople (PPP) Hamiltonians of increasing complexity are presented. The degree of correlation in the solutions is controlled by the parameter β. Convergence properties of the DOS for N = 10 and N = 14 are studied varying the extent of correlation. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 719-728, 1997
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  • 110
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    International Journal of Quantum Chemistry 63 (1997), S. 749-765 
    ISSN: 0020-7608
    Keywords: building-block ; polymer ; NEXAFS ; static exchange ; x-ray absorption ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The poly(ethylene-terephthalate) and poly(bisphenol-A-carbonate) compounds are used to illustrate the possibilities and limitations of building-block analysis of polymer near-edge X-ray absorption spectra. Experimental spectra obtained for thin polymer films are analyzed using theoretical static exchange calculations of C1s and O1s excitation spectra on model molecules selected as possible building blocks. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 749-765, 1997
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  • 111
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    International Journal of Quantum Chemistry 63 (1997), S. 767-780 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The relation between receptor structure and the mechanism by which ligands with different pharmacological efficacy elicit a response is analyzed in a three-dimensional molecular model of the human 5-HT1A receptor [Pardo et al., J. Biomed. Sci. 3, 98 (1996)]. According to the model, the main interaction of the endogenous neurotransmitter serotonin (5-HT) to the human 5-HT1A receptor consists of (i) the ionic interaction between the protonated side-chain amine of 5-HT and the conserved Asp-116, located in transmembrane helix (TMH) 3; (ii) the hydrogen bond between the 5-OH group of 5-HT and Thr-199, located in TMH 5; and (iii) the complex between the aromatic indole ring of 5-HT and His-192, located in TMH 5. Ab initio quantum chemical calculations were used to position ligands in molecular models of the binding pocket of the 5-HT1A receptor consisting of these interacting residues. The consequences of the interactions between the ligands and the proposed recognition sites of the 5-HT1A receptor, reflected in the electronic structure of the complexes, suggest a mechanism by which the receptor activation is triggered by ligand binding. Results from the computations show a more favorable interaction of the aromatic ring of 5-HT (or of the 5-HT1A selective agonist 8-OH DPAT) with the protonated form of His-192 than with the neutral form. The change in the reactivity of the imidazole ring then leads to the attraction of a proton from another site in the receptor: Arg-175 in TMH 4. This proton transfer to His-192 that is triggered by the interaction with ligand is facilitated by Asp-191 in TMH 5, as shown by energetic considerations. The position of the ligand recognition pocket in the transmembrane bundle of the 5-HT1A receptor suggests that the ligand-induced proton transfer may cause a conformational change in the tertiary structure of the receptor that could be transmitted toward the intracellular end to facilitate the transmission of the signal. © 1997 John Wiley & Sons, Inc.
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  • 112
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    International Journal of Quantum Chemistry 63 (1997), S. 853-860 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Calculations of spectral characteristics of seven Ru(II) and Ru(III) complexes were performed. The excitation energies of the compounds studied in this work are in agreement with experimental data. Some regularities in the structure of excited states were demonstrated. Our results show that the use of the quantum chemical methods in which the reorganization and solvent effects are included explicitly can give reliable information concerning electronic structure and spectra of complex transition-metal compounds. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 853-860, 1997
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  • 113
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    International Journal of Quantum Chemistry 63 (1997), S. 861-874 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Direct ab initio dynamics calculations based on a canonical variational transition-state theory with several multidimensional semiclassical tunneling approximations were carried out to obtain rate constants for the water-assisted tautomerization of formamide. The accuracy of the density functionals, namely, B-LYP, B3-LYP, and BH&H-LYP, were examined. We found that the BH&H-LYP method yields the most accurate transition-state properties when comparing it to ab initio MP2 and QCISD results, whereas B-LYP and B3-LYP methods predict barrier heights too low. Reaction path information was calculated at both the MP2 and nonlocal hybrid BH&H-LYP levels using the 6-31G(d,p) basis set. At the BH&H-LYP level, we found that the zero-point energy motion lowers the barrier to tautomerization in the formamide-water complex by 3.6 kcal/mol. When tunneling is considered, the activation energy at the BH&H-LYP level at 300 K is 17.1 kcal/mol. This is 3.4 kcal/mol below the zero-point-corrected barrier and 7.0 kcal/mol below the classical barrier. Excellent agreement between BH&H-LYP and MP2 rate constants further supports the use of BH&H-LYP for rate calculations of large systems. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 861-874, 1997
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  • 114
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    International Journal of Quantum Chemistry 63 (1997), S. 913-916 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The leaky aquifer function W(x,y), an incomplete Bessel function which has had application in hydrology, is now also arising in electronic-structure calculations on periodic systems. This work presents an expansion which improves the efficiency of calculation of W in the range where x and y are comparable and both are larger than unity. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 913-916, 1997
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  • 115
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have studied the variation of hardness, polarizability, and electronic and nuclear repulsion energy components of molecules in different nonequilibrium situations obtained by bond distortion and also by placing external point charges on the symmetry axis of the molecules. The above quantities are calculated through Kohn-Sham version of spin-polarized density functional theory with nonlocal exchange correlation functional. Interesting correlations have been found to exist between different energy components, hardness, and polarizability. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 917-926, 1997
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  • 116
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    International Journal of Quantum Chemistry 63 (1997), S. 961-979 
    ISSN: 0020-7608
    Keywords: symmetric group ; class algebra ; class sums ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Progress in the formulation of a procedure for the combinatorial evaluation of the product of a single-cycle and an arbitrary class sum in the symmetric group algebra is presented. The procedure consists of a “global conjecture” concerning the representation of the product [(p)]n·[*]n in terms of a set of operators referred to as reduced class sums, and of an (incomplete) set of rules for the evaluation of the (n-independent!) coefficients of these operators. Two new types of index elimination rules are suggested, and some properties of the formalism are explored. These include useful sum rules as well as a certain “detailed balance” property that sheds some light on a combinatorial aspect of the global conjecture. The present results account for several new types of reduced class coefficients and suggest some feasible further developments. Some outstanding open problems are pointed out. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 961-979, 1997
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  • 117
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    International Journal of Quantum Chemistry 64 (1997), S. 35-42 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A simple algebraic manipulation is presented for obtaining the analytical rectangular coordinate expressions of the atomic orbital wave functions with angular quantum number l of a D-dimensional atom, where no hyperspherical harmonics or any differential calculus is involved. A general expression of the D-dimensional f-orbitals is given which supplements the previously obtained result of D-dimensional d-orbitals.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 35-42, 1997
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  • 118
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    International Journal of Quantum Chemistry 64 (1997), S. 31-33 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Chemical reactions - as well as other collision processes - proceed generally from input elements condensing into a transitional complex and then dissociating into new fragments. Viewing the complex formation as reciprocal to its fragmentation combines them into conjugate elements of a single process, namely the complex evolution from a compact to a fragmented form, as its radius of inertia expands. As the wave functions of an atomic electron resolve conveniently into their radial and spherical-harmonic elements, so do those of multiparticle complex resolve into radial and hyperspherical-harmonic parts. Their numerical integration becomes thus accessible without resort to independent-particle or perturbative approximations. This approach displays a complex progressive branching into fragmentation channels. Evidence from small prototypes has shown each branching step to involve only a modest subset of the infinite harmonics set.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 31-33, 1997
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  • 119
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    International Journal of Quantum Chemistry 64 (1997), S. 43-51 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A zero-order wave function of a dimer is defined as the antisymmetrized product of monomer Hartree-Fock wave functions. A symmetry-adapted many-body perturbation theory is developed up to the third order to obtain interaction energies at the Hartree-Fock level. Correlation effects are accounted for at the second order. The theory is based on second quantization to ensure full symmetry forcing. Intermolecular overlap effects are handled by the biorthogonal formulation. Test calculations on dimers of He, H2, HF, and water show that the third-order results are very accurate. No “instability” due to the use of biorthogonal orbitals was observed.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 43-51, 1997
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  • 120
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    International Journal of Quantum Chemistry 64 (1997), S. 53-61 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Nonadiabatic effects resulting from very short rise times (few femtoseconds) of intense (tens of TW/cm2) laser pulses may enhance in an unexpected way dissociation rates of molecules interacting with such radiation fields. Starting from a given initial vibrational level, the wavepacket describing the molecule-plus-field system is spread over several resonances (instead of a single one predicted when the laser is adiabatically switched on) interfering during the excitation process. The article reviews typical signatures of the time-dependent nonadiabatic behaviors of vibrational states' survival probabilities and of fragments' kinetic energy spectra. A H2+ molecular ion irradiated by short intense laser pulses in the UV absorption wavelength regime is taken as an illustrative example. A possibility of dissociating the system using a single photon of 532 nm wavelength is devised, with the peculiarity that the energy carried by this photon is not enough for the fragmentation to occur. The suggested mechanism, which may be called below threshold dissociation, refers to a highly nonadiabatic switching on of the laser, leading to the temporal excitation of some resonances with efficient decay rates.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 53-61, 1997
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  • 121
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    International Journal of Quantum Chemistry 64 (1997), S. 63-69 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The resolution of the identity (RI) approximation to the Hartree-Fock method was implemented within the NWChem suite of ab initio programs for parallel computers. After a description of the method, a detailed account of the implementation is given. We present a sample calculation and compare its performance and accuracy to an “exact” direct SCF calculation. Problems and limitations of the method are also discussed.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 63-69, 1997
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  • 122
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    International Journal of Quantum Chemistry 64 (1997), S. 71-83 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We describe the direct photodesorption of CO from the Ni(001) metal surface during the absorption of a short pulse of UV light by the adsorbate and account for the dynamics of the desorbing species coupled to electronic excitations of the substrate, which lead to energy dissipation. The interaction potentials and couplings for the ground and excited states are obtained from electronic structure calculations and from experimental information. The time evolution of CO vibrational populations is studied for propagating wavepackets for the adsorbate-substrate complex with a split-operator algorithm, followed by a perturbative treatment of dissipation and response to the light pulse. Direct photodesorption is found to occur predominantly in the excited electronic state and is compatible with dissipation. Results are presented for CO photodesorption by Gaussian pulses with several durations to show the effect of light pulse shapes on the time evolution of populations. Shorter pulses in the femtosecond range are shown to give relatively larger populations of excited vibrational states during the desorption of CO.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 71-83, 1997
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  • 123
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    International Journal of Quantum Chemistry 64 (1997), S. 143-155 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A macroscopic solution polarization free-energy functional is combined with semiempirical molecular orbital theory to study shifts of electronic absorption energies for several molecules in solution. The present method requires calculation of the induced electrostatic potential on the van der Waals surface and this calculation is implemented in a new way. The combined method is tested by calculating absorption energy shifts for several molecules of standard interest. We find the physically reasonable result that there is a correlation between the absorption energy shift and the magnitude of the dipole moments of the initial and final states involved in the absorption transition.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 143-155, 1997
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  • 124
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    International Journal of Quantum Chemistry 64 (1997), S. 175-182 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Double-ionization energies, for transitions from the ground state of the neutral propyne molecule to both singlet and triplet states of its dication, are investigated theoretically with the ab initio second-order algebraic diagrammatic construction [ADC(2)] propagator method. The results are compared with a previous study which reported both experimental data obtained from double-charge-transfer (DCT) spectroscopy and their analysis with semiempirical theory. The ADC(2) predictions match almost all the experimental peaks well. In the lower-energy range, for transitions to dication states up to 7 eV above the ground state, ADC(2) predictions indicate that significant energy separations of those dication terms dominated by a common electronic configuration are responsible for previous difficulties in the assignment of peaks in that region. At higher energies, both configuration interaction and satellite ionizations are significant.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 175-182, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 211-222 
    ISSN: 0020-7608
    Keywords: quantum chemistry ; weak interactions ; cationic van der Waals complexes ; cluster cations ; potential energy surfaces ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ions of molecular complexes with internal interactions partly of van der Waals type differ significantly from their neutral parent species in binding, structure, and dynamics. Information about such systems is still rather scarce, both experimentally and theoretically. The article discusses some aspects of the present knowledge concerning cationic dimers and trimers of the type RgnM+ with Rg denoting a rare-gas atom, and M, either a (diatomic) molecule or a rare-gas atom, in comparison with the neutral counterparts. In some more detail, potential energy surfaces (PESs) for the six lowest electronic states of ArHCl+ are reported, as obtained from multireference CI calculations with an extended Gaussian AO basis set. From the PESs, structural, energetical, and dynamical features are derived. For the cationic argon trimer Ar3+ in the electronic ground state, a detailed analysis of the PES, the mode couplings, and the classical internal dynamics is carried out, leading to a consistent picture of a floppy molecular aggregate with rapid energy exchange between internal degrees of freedom and early onset of classical chaos with increasing energy.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 211-222, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 247-248 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is well known that urea-nitrate (UN) is a white solid complex prepared by urea with nitric acid, which is thus usually written as U⋅HNO3, (U--urea). Now it has widely been applied to fertilizer manufacture, chemical washing, petroleum opening, and other fields in industry because of its solubility in water into the original materials, i.e., urea and nitric acid. Up to now little is known about the electronic structure and chemical bond of UN. Therefore in this study the electronic structure of UN has been calculated by the SCC-DV-Xα method and its infrared and ultraviolet absorption bands and XPS binding energy have been investigated. On the basis of these, the chemical bond of UN has been discussed and a chemical formula for UN, [UH]+NO3-, to be named uronium nitrate, is proposed.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 247-248, 1997
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  • 127
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    International Journal of Quantum Chemistry 64 (1997), S. 271-283 
    ISSN: 0020-7608
    Keywords: acropetal ; adsorption ; aquatic plants ; polynuclear aromatic hydrocarbons ; sediments ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Saturation phenomena for the uptake of polynuclear aromatic hydrocarbons (PAHs) by rooted aquatic plants were observed in both field and laboratory experiments. From these data, a Langmuir adsorption model was derived and was shown to describe the assimilation of sediment PAHs by aquatic plants at low-sediment PAH concentrations. The low-concentration restrictions were relaxed by using an empirical Freundlich model. This permitted the specification of equilibrium constants, relative rate constants for adsorption and desorption, and saturation levels, and it provided a realistic description of the acropetal mobilization of sediment PAHs by rooted aquatic macrophytes. The growth of aquatic plants was found to be inhibited by sediment PAHs, but at concentrations several orders of magnitude above the corresponding threshold effect levels for aquatic animals. The effects of the acropetal transport of sediment PAHs into the above-soil portions of aquatic plants merits further investigation because of the possibility of an enhanced availability of these carcinogens to associated aquatic food webs. In addition, these results may suggest pathways for bioremediation of the impact of PAHs on associated biota.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 271-283, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 325-336 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have already proposed a convenient method to estimate the magnitude of the Peierls instability in finite one- and two-dimensional (1D and 2D) polyenes from the viewpoint of orbital symmetry [J. Chem. Phys., 103, 9726 (1995)]. This treatment is applied to a model system for charge-transfer complexes, in which the unpaired electron is occupied in a molecule, generating a half-filled energy band by intermolecular interaction. As the first step, a model molecular crystal composed of ethylene anion (or cation) molecules is treated to confirm the applicability of our formulas for 2D polyene. It is clearly shown that molecules in a crystal are structurally distorted to gain the energetic stabilization within the 1D structure, while they are rearranged in a regularly equidistant structure under strong interchain interaction. This treatment would provide insight into the relationship between the crystal structure of charge-transfer complexes and its electronic property.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 325-336, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 387-392 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To obtain new insight into the nature of the correlations in distributions of nucleotides in DNA sequences, an efficient algorithm is presented by means of which one can generate nucleotide sequences with prescribed correlational properties. It is demonstrated in the case of human T-cell receptor beta chain gene segment that by extracting a finite number of parameters from the natural sequence one can generate artificial sequences which reproduce the correct correlational properties. It is shown how the apparent long-range correlations, or - what is equivalent - the 1/f form of the spectral density result due to the arrangement of DNA segments with different functional roles which also differ in composition in terms of nucleotide classes. This approach enables one to get under control the impact of statistical fluctuations which represent a major obstacle in the analyses of finite natural sequences.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 387-392, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 411-420 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A linear scaling of the number of nonzero integrals in extended systems calculations and the solution of the difficult cutoff threshold problems in the integral evaluation of periodic HF computations could be solved by the usage of orbitals with a finite extension. The present work proposes the usage of Box orbitals, defined inside spheres centered on the nuclei. Preliminary tests on small systems (atoms and H2+) were performed. The results are very encouraging, since, in most cases, the Box orbitals give better results (giving results of equivalent quality in the worse cases) than do the classical Gaussian orbitals. No spurious effects were encountered.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 411-420, 1997
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  • 131
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    International Journal of Quantum Chemistry 64 (1997), S. 453-458 
    ISSN: 0020-7608
    Keywords: hexisa aqua copper cation ; charge transfer excited states ; 3d→3d excited states ; basis sets ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure of the ground state and the doublet excited states due to 3d→3d transitions and charge-transfer transitions from ligand to copper of Cu(H2O)62+ are investigated by ab initio calculations. The excited states corresponding to the 3d→3d transitions are calculated to be 1.1-1.4eV above the ground state and this is in good agreement with experiment. The charge-transfer excited states are not so easily determined as are the 3d→3d states, and they are described as an electron transfer from an orbital localized on each water. We have focused our attention on the description of these excited states. The charge-transfer excitations are predicted to start around 6.5 eV for Cu(H2O)62+.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 453-458, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 497-499 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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    International Journal of Quantum Chemistry 64 (1997), S. 523-552 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The proper treatment of many-body effects for fermions has long been a goal of theorists working in atomic and molecular physics. The computational demands of such a treatment, however, when coupled to the added difficulties imposed by the presence of external electromagnetic sources, have resulted in few studies of many-body effects in strong magnetic fields, i.e., in the field regime where perturbation theory is no longer applicable. In this article, we review the fundamental aspects of the problem and describe a variety of theoretical approaches for small atoms and molecules in strong fields, beginning with mean-field theory (Hartree-Fock) and progressing through variational and exact stochastic methods.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 523-552, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 571-580 
    ISSN: 0020-7608
    Keywords: Molecular dissociation ; Zeeman effect ; paramagnetic molecules ; NO2, (O2)2 ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We show that it is possible to control the dissociation energies of molecules with an external magnetic field. We focus our interest on the lowest dissociation channel for which the two atomic and/or molecular products are formed in their ground state. The crucial requirement is the paramagnetic character of at least one of the two dissociation products. Then, an external magnetic field lowers the energy of the paramagnetic species in its lowest Zeeman component and, possibly, the corresponding energy of dissociation of the parent molecule. This it true for diatomic molecules when at least one of the atoms has an odd number of electrons. This is also true for oxygen and phosphorus atoms which have a 3P2 ground state. The Zeeman energy shift of paramagnetic species is always of the order of 1 cm-1 per tesla. The main theoretical difficulty is to determine the correlation diagram existing between the bound states of the parent molecule and the states of the products, or equivalently, how the energy evolves as a function of the internuclear distance corresponding to the dissociation coordinate. Little is known about this evolution, except for diatomic molecules, because the large internuclear distances are difficult to observe experimentally. The main part of the information come from ab initio calculations. For diatomic molecules, the dissociation coordinate is also the unique internuclear distance while for polyatomic molecules, the potential energy surface has 3N-6 coordinates and multidimensional effects should be considered. In any case, the singlet-triplet-quintet, etc… (or doublet-quartet, etc…) interactions should play an important role in the correlation diagram because crossings are expected between singlet and triplet potential energy curves (from short to long internuclear distances) and these interactions transform the crossings into anticrossings. The specific examples of alkali diatomic molecules (Li2, Na2, etc…), of NO2 and of (O2)2 are analyzed in details.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 571-580, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 629-633 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The nuclear magnetic resonance (NMR) line shifts of ortho-hydrogen molecules relative to the lines of hydrogen deuteride (HD) molecules in a para-hydrogen matrix are reviewed in terms of the molecular spectroscopy of the rotational energy levels of ortho-hydrogen molecules in high magnetic fields. This example is used to illustrate how known molecular spectra can be used to determine fundamental interactions in condensed matter, and how similar methods could be used to measure the magnetic fields near astrophysical objects such as white dwarfs and neutron stars.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 629-633, 1997
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  • 136
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    International Journal of Quantum Chemistry 64 (1997), S. 679-687 
    ISSN: 0020-7608
    Keywords: Quantum mechanics ; chemistry ; molecules ; Einstein-Podolsky-Rosen correlations ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: “Quantum mechanics is the first mathematically formulated scientific theory where in a nontrivial way the whole is more than the combination of its parts” (H. Primas, 1982). Nowadays most chemical observations and phenomena are understood on the basis of the molecular point of view. The three-dimensional molecules chemists speak about are micro-entities that as such are subject to a theoretical description in terms of quantum mechanics. Therefore one would expect that also in the molecular domain holistic effects appear which are caused by the well-known Einstein-Podolsky-Rosen (EPR) correlations. In the present study we demonstrate that - the unrestricted validity of quantum mechanics presupposed - such correlation phenomena play an important role in the description of a dissociation reaction A2⇒2A, where an intrinsic (structure establishing) degree of freedom fades into a mere translation of the fragments. Finally we will address the question, why in general EPR correlations are observed quite rarely in the domain of molecules - despite their fundamental importance for the notion of molecule itself.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 679-687, 1997
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    International Journal of Quantum Chemistry 64 (1997), S. 711-719 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: AM1 semiempirical molecular orbital calculations have been performed on the inclusion complexes of β-cyclodextrin (β-CD) with methylated benzoic acids in two orientations, the “head-first” and “tail-first” positions. In the former, the CO2H group points toward the primary hydroxyls of the CD. In the latter, it points away from them. Out of 30 possible inclusion complexes, AM1 results predict only three clearly stable inclusion complexes. These are β-CD with 4-methyl benzoic acid in the head-first position, β-CD with 2,4-dimethyl benzoic acid in the head-first position, and β-CD with 3,5-dimethyl benzoic acid in the tail-first position. The orientations of the stable inclusion complexes correlate with the total number of intramolecular hydrogen bonds and intermolecular hydrogen bonds. The stability of a complex also correlates with the closeness of the host and guest geometries in the complex to their isolated molecule geometries.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 711-719, 1997
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    International Journal of Quantum Chemistry 65 (1997), S. 9-17 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Dyson equation and Green's function formalism map the problem of N electrons in the Born-Oppenheimer nuclear field into a one-electron Schrödinger equation problem in quantum chemistry. The mass operator contains the information about electron correlation, and the ground-state energy, electron affinity, and ionization energy of a molecular system. This pseudopotential approach is combined with the random-phase approximation (RPA) method to give a model with spontaneous symmetry breaking, where the relevant features are incorporated in a transparent way. An effective potential is developed consisting of a Hartree-Fock solution with auxiliary fields to probe for deformation instabilities. The model is then connected to a closely related perturbative propagator approach and linked with the configuration interaction formalism.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 9-17, 1997
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  • 139
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    International Journal of Quantum Chemistry 65 (1997), S. 83-88 
    ISSN: 0020-7608
    Keywords: N8C12 ; heterofullerenes ; ab initio ; geometry optimization ; SCF/MP2 ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The result of an ab initio investigation on the hypothetical system N8C12 is presented. This is a fullerene-like structure with Th symmetry. Calculations have been performed at self-consistent field (SCF), second-order Møller-Plesset (MP2), and density functional theory (DFT) level, using three different basis sets: minimal (STO-3G), Valence Double Zeta (VDZ), and (at SCF level only) VDZ plus polarization (VDZP). Second-order analytical derivatives have been computed with the STO-3G basis set and the frequencies obtained are all real. The results indicate that, at this level of description, this hypothetical structure is a local minimum on the potential energy surface.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 83-88, 1997
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  • 140
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    International Journal of Quantum Chemistry 65 (1997), S. 121-126 
    ISSN: 0020-7608
    Keywords: Energy partitions ; molecular orbital localization ; aromaticity ; basicity ; pyrazole ; imidazole ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electronic energy partitionings resulting from the classification of occupied molecular orbitals in disjoint subsets are seen to be consistent with localization procedures preserving that classification, regardless of the treatment given to the crossing terms between different subsets. To illustrate the utility of this result, the electronic energies of pyrazole and imidazole are partitioned into σ- and π-localized molecular orbital energy contributions, and the results are related with the aromaticity and basicity differences between both heterocycles.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 121-126, 1997
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  • 141
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    International Journal of Quantum Chemistry 65 (1997), S. 159-165 
    ISSN: 0020-7608
    Keywords: Dynamic Lie algebraic method ; inelastic collision between two diatomic molecules ; vibrational transition probabilities ; vibrational energy transfer ; selection rules for the transitions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present the quantum mechanical studies on the vibrational energy transfer in the inelastic collinear collision between two diatomic molecules using a dynamic Lie algebraic method of Alhassid and Levine [Phys. Rev. A 18, 89 (1978)] within the semiclassical approximations. A dynamical algebra h15 is formed and used for calculating the transition probabilities and the expectation values of the interaction potential. Under the first-order approximation of the group parameters, the selection rules for the transitions among the vibrational levels have been obtained.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 159-165, 1997
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    International Journal of Quantum Chemistry 65 (1997), S. 199-204 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new method for construction of characteristic polynomials (CP) of complicated graphs having arbitrary edge and vertex weights has been developed. The method first converts the graph into isospectral linear chains with weighted vertices and edges and then builds up the CP coefficients recursively. Two types of graphs have been used for illustration, viz., (i) graphs that can be linearized by symmetry factorization and (ii) graphs without symmetry which are to be linearized by an algorithm involving walks of unit length. Both types have been illustrated, of which type (i) includes the Schlegel of fullerene fragment C20 and another large graph with many fused rings.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 199-204, 1997
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    International Journal of Quantum Chemistry 65 (1997), S. 241-256 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A rigorous approach of density functional theory (DFT) for open-shell multifermionic systems is devised, using a local-scaling transformation (LST) scheme involving a single scalar function f(r). Within the orbit θN induced by a model wave function (MWF) _Ψ, the total energy of space or spin degenerate or nondegenerate states is expressed as an exact functional of the single-particle density ρ(r). In the first step, it is shown how the reduced density functions and matrices (RD Fs and Ms) of any order (s=1,…,N-1) of an (open or closed) N-fermion system can be expressed as functionals of the one-fermion charge density. The spatial components (which depend on the spin configuration of the fermions) of the RD Fs and Ms of orders 1 and 2, and the resulting charge and spin distribution and correlation densities, are functionals of the one-fermion charge density. We form the manifolds of the charge and spin distribution and correlation energy functionals, from which the theory can be extended to degenerate states of a spinless Hamiltonian. For multielectronic systems, the spin densities and spin-pair correlations as well as the spin-orbit and spin-spin interactions are determined by the function ρ(r). In the second step, it is shown how the expectation values of s-particle operators, in particular those of spin-including mono- and biparticle operators, are functionals of the monoparticle density ρ(r). We give general expressions for the expectation values of spin-free, spin-field, spin-orbit and spin-spin interaction operators in degenerate states. We show how to express the energy functional of the spin manifolds of a system described by a Schrödinger Hamiltonian. The use of an LST, which preserves spin symmetry, to build this functional must fulfill certain conditions in order to maintain the space symmetry of the system. We investigate the dependence of the Weizsaecker and extended Thomas-Fermi kinetic energy terms and of the Coulomb attraction, repulsion, and exchange potential energy terms on the choice of the MWF, i.e., on the induced orbit and on the spin configuration of the system.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 241-256, 1997
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    International Journal of Quantum Chemistry 65 (1997), S. 299-304 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In Article I, we showed that the freeon-exchange theory of magnetic coupling is a viable alternative to the widely used spin-exchange theory. In Article II, we are concerned with the symmetric-bridge, molecular magnet, AXB, where A and B are magnetic atoms and X is the bridge. The symmetric-bridge molecular magnet is of particular interest because the major features of its spectrum and its coupling constants are obtained by means of the two-electron, two-site freeon theory. We exhibit one example of ferromagnetic coupling, J〉0 and one of antiferromagnetic coupling, J〈0.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 299-304, 1997
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    International Journal of Quantum Chemistry 65 (1997), S. 377-377 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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    International Journal of Quantum Chemistry 65 (1997), S. 389-398 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In probability theory an event is characterized by a set of outcomes. The probability of an event is a prediction of the relative frequency of the outcomes that lie in the set, when the experiment is repeated independently. In quantum mechanics an event is identified with a closed subspace of Hilbert space. Do the probabilities of quantum events predict relative frequencies in the same way? The famous analysis of Bell shows that this cannot happen in general, for all quantum events. Nevertheless the probabilities must predict something, and if not relative frequencies then what? There are several answers to the question of how to interpret quantum probabilities as relative frequencies, but they all involve restrictions on the events that are considered. This article surveys three such interpretations, which correspond to three possible choices: measured events, macroscopic events, and position events.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 389-398, 1997
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  • 147
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    International Journal of Quantum Chemistry 65 (1997), S. 439-451 
    ISSN: 0020-7608
    Keywords: CASVB ; modern VB ; nonorthogonal orbital optimization ; multiconfiguration spin-coupled ; CASSCF ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We outline the CASVB strategy, which may be used either to generate very compact modern valence bond representations of CASSCF wave functions or to optimize general types of modern VB wave function. A simple algorithm is presented for the elimination of redundant or constrained parameters from the appropriate second-order optimization problems. Selected results for three systems - benzene, the allyl radical, and LiH - are used to illustrate various ways in which CASVB procedures can be used to perform fully variational optimizations of nonorthogonal orbitals and structure coefficients in modern VB wave functions.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 439-451, 1997
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    International Journal of Quantum Chemistry 65 (1997), S. 477-486 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A multigrid method for numerically solving electrostatics and quantum chemical problems in real space is discussed. Multigrid techniques are used to solve both the linear Poisson equation and the nonlinear Kohn-Sham and Poisson-Boltzmann equations. The electrostatic potential, Laplacian, charge densities (electrons and nuclei), Kohn-Sham DFT orbitals, and the self-consistent field potential are all represented discretely on the Cartesian grid. High-order finite differences are utilized to obtain physically reasonable results on modestly sized grids. The method is summarized and numerical results for all-electron atomic and molecular structure are presented. The strengths and weaknesses of the method are discussed with suggested directions for future developments, including a new high-order conservative differencing scheme for accurate composite grid computations which preserves the linear scaling property of the multigrid method.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 477-486, 1997
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  • 149
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    International Journal of Quantum Chemistry 65 (1997), S. 655-663 
    ISSN: 0020-7608
    Keywords: Fullerenes ; endohedral complexes ; rotational spectroscopy ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We propose a two-parameter model Hamiltonian to analyze the low-energy dynamics of endohedral C60 fullerene complexes such as Li+@C60, Na+@C60, CO@C60, LiF@C60, and LiH@C60. The simplicity of the model is a direct consequence of very strong constraints imposed by both high symmetry and close confinement conditions, on the spherical anisotropy of the guest-cage interaction. In the parameter space region expanded by the selected systems, the guest low-energy dynamics undergo transitions from almost free rotations to more or less hindered rotations. These dynamics produce very particular features in the low-temperature rotational spectra, which can be taken, therefore, as fingerprints of a particular guest-cage interaction.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 655-663, 1997
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  • 150
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    International Journal of Quantum Chemistry 65 (1997), S. 651-654 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Both theoretical and experimental studies in the past have indicated that the charge transport in doped polyacetylene is due primarily to traveling charged solitary waves along the polymer chain backbone accompanied by hopping from one chain to another. The conductivity in this model is still determined by a band gap. The nature of the ground and excited states of the doped system, however, is not fully understood. Previous ab initio calculations, based on transoctatetraene simulating transpolyacetylene interacting with a single iodine atom and also a fairly low level of basis set, have pointed to the possibility that, while the calculations at the Hartree-Fock level puts the charge-transfer state below the “covalent” state, the results are reversed when correlation is included. Apart from the basis-set inadequacy and the small size of the polyene considered in this study, it is also true that, in solution, iodine exists only as polyiodide ions I3-, I5-, etc. In this work, we address some of the above deficiencies of the model.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 651-654, 1997
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  • 151
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    International Journal of Quantum Chemistry 65 (1997), S. 697-707 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Explicit expressions of polarizability and hyperpolarizability are formulated by a path integral method in terms of the generalized coherent states of the Thouless parametrization. A novel scheme is shown for calculating the molecular properties including total energy, and the Monte Carlo method using the metropolis algorithm is utilized for performing the actual calculations. As a simple example, the hydrogen molecule is examined to demonstrate performances of the present scheme. We discuss improvement of the accuracy of the (hyper)polarizabilities depending on the number of the division for the partition function and also the behaviors of the (hyper)polarizability for the external magnetic field. We compare the present results with those obtained by the conventional molecular orbital theory.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 697-707, 1997
    Additional Material: 9 Ill.
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  • 152
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    International Journal of Quantum Chemistry 65 (1997), S. 767-785 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Molecular orbital calculations were carried out for the dimerization step in the polymerization process of vinyl acetate and styrene through free radicals and ionic mechanisms. The calculations were performed for monomers, dimers, their positive and negative ions, and free radicals. The minimum-energy geometry is achieved in all cases, the geometrical and electronic parameters are analyzed, a dimerization reaction pathway is proposed, and the heats of polymerization obtained are in excellent agreement with experimental data.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 767-785, 1997
    Additional Material: 12 Ill.
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  • 153
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    International Journal of Quantum Chemistry 65 (1997), S. 759-765 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The results of ab initio post-Hartree-Fock study of the molecular structures, relative stabilities, and Hartree-Fock level calculations of IR frequencies and intensities for mono- and dihydrated oxo-amino-tautomers of guanine are reported. The geometries of the local minima were optimized without symmetry restrictions at the second-order Møller-Plesset perturbation theory. The standard 6-31 G(d) basis set was used. Local minima were verified by calculations of the matrix of energy second derivatives [Hessian at the HF/6-31 G(d) level]. The single-point calculations were also performed at the MP4(SDQ)/6-31G(d)//MP2/6-31G(d) and MP2/6-31++G(d, p)//MP2/6-31G(d) levels of theory. The total energies were corrected for the zero-point energy contributions scaled by a factor of 0.9. The structural parameters of mono- and dihydrated complexes were analyzed and related to the characteristics of hydrogen bonds. We found that the interaction of guanine tautomers with two water molecules changes the order of the gas-phase stability: 7GUA≈9GUA into the order which corresponds to the stability of the guanine tautomers in the polar solvent: 9GUA≫7GUA. The predicted IR HF/6-31G(d) level frequencies and intensities are presented.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 759-765, 1997
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  • 154
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    International Journal of Quantum Chemistry 65 (1997), S. 803-816 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Molecular dynamics simulations of clusters of Li+ and Be2+ cations with up to 12 water molecules were performed calculating the particle trajectories using Hartree-Fock-derived forces. It was found that independent of the starting configuration tetrahedral clusters are obtained in less than 1 ps. Only for Li+ clusters, transition states with five and three water molecules are found. We discuss the structures of the clusters and the vibrational dynamics of the water molecules and compare them with other ab initio simulations, with simulations using analytical potential functions, and with static calculations. Water-dissociation (hydrogen transfer) reactions which take place at elevated temperatures were investigated.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 803-816, 1997
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  • 155
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    International Journal of Quantum Chemistry 65 (1997), S. 787-801 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reaction mechanism and relative stabilities of the intermediates and transition states in the reaction of 1O2 plus ethylene molecule using ab initio molecular orbital (MO) theories at several levels of theory with the correction of the nondynamic and dynamic electron correlation effects were systematically investigated. Full geometry optimizations of the corresponding biradical (BR) intermediates, perepoxide (PE) and 1,2-dioxetane (DO) were performed by complete-active-space CASSCF{2,2}/6-31G* method with nondynamic electron correlation effect and Møller-Plesset MP2/6-31G* method with dynamic electron correlation effect. For the 1,4-biradical intermediates, new gauche-type 1BR state was found at both CASSCF and MP2 levels, corresponding to the transition state of the rotation motion of the O2 moiety. It was found from the intrinsic-reaction-coordinate (IRC) study that another gauche-type 1BR transition state connects smoothly to the reactant system 1O2+H2C(DOUBLE BOND)CH2 and the gauche minimum 1BR state, showing that the reaction through the 1,4-biradical intermediates initially proceeds through the gauche transition state to form the gauche minimum 1BR state, following that the free rotation of O2 moiety occurs due to the energy barrier less than 4.0 kcal/mol. The stability of the perepoxide is surprisingly sensitive to the levels of the theory and the basis sets employed. The coupled-cluster methods, CCSD and CCSD(T), gave the reasonable stabilities of 1,4-biradical intermediates, perepoxide, and dioxetane as a reaction product. From the results of the CCSD and CCSD(T) methods, the reaction of 1O2+H2C(DOUBLE BOND)CH2 proceeds by a two-step mechanism through the 1,4-biradical intermediates rather than through the perepoxide.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 787-801, 1997
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  • 156
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    International Journal of Quantum Chemistry 65 (1997), S. 827-838 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A general strategy for computing the vibrational frequencies of adsorbates on surfaces is presented. Rather than use numerical fits to the surface energy, we advocate diagonalizing a mass weighted energy second-derivative matrix. The computation of energy derivatives has several advantages: It facilitates a more accurate treatment of the adsorbate/substrate mass ratios. The normal modes of the surface vibrations are given automatically in the diagonalization step. Finally, a major advantage of using energy derivatives is that they provide estimates of the range of the adsorbate/substrate interactions which can be used to ensure that the frequency values are converged. We illustrate the strategy for cluster calculations which simulate the H/Al(100), O/Al(111), H2O/Al(111), and Al/Si(111) surfaces.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 827-838, 1997
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  • 157
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    International Journal of Quantum Chemistry 65 (1997), S. 817-826 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The geometry and vibrational spectrum of TeCl4 was calculated with various quantum chemical methods [Hartree-Fock, second-order Møller-Plesset (MP2) and generalized gradient approximation density functional theory (GGA-DFT)]. Five different basis-set combinations were tested: the relativistic effective core potentials with double-zeta split valence basis (RECP) of Hay & Wadt (HW) and Stevens et al. (CEP); the above RECP basis sets extended with polarization functions for Te and using a 6-31G* basis for Cl (HW* and CEP*); a medium-size all-electron basis set (ALL). The quality of the calculated data was assessed by comparison with recent experimental results. The Hartree-Fock method combined with the HW and CEP basis sets provided a very good approximation of the experimental vibrational spectra. The quality of the results is comparable to those of the best methods (MP2, B3-P, B3-PW with HW* and CEP* and B3-LYP, B3-P, B3-PW with the ALL basis set). However, the HW and CEP basis sets provided very poor geometry and vibrational frequencies when they were used in combination with any correlated method in this work. Similarly, the DFT methods using Becke's 1988 exchange functional (B-LYP, B-P, B-PW) without the inclusion of the exact exchange let to very poor results with the basis sets used in this study.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 817-826, 1997
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  • 158
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    International Journal of Quantum Chemistry 65 (1997), S. 857-865 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have developed procedures for determining the potential, electron density, and current at a planar metal surface with an applied static field in vacuum. These calculations are made using density-functional theory within the local density approximation (LDA) for the Kohn-Sham exchange and correlation. Several different techniques were compared including the use of different expressions for the exchange and correlation energies. The steady-state response of field emission to a laser is found using Floquet methods to solve the dipole approximation of the time-dependent Schrödinger equation with the static potential obtained from density-functional theory. These simulations show that there is a resonance in the response that causes a significant increase in the tunneling current. This resonance occurs for electrons that are promoted above the barrier by absorbing quanta from the laser when the line integral of the momentum between the turning points is equal to h/2.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 65: 857-865, 1997
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  • 159
    ISSN: 0730-2312
    Keywords: osteoblasts ; proliferation ; growth control ; differential display ; differentiation ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Fetal rat calvarial-derived osteoblasts in vitro (ROB) reinitiate a developmental program from growth to differentiation concomitant with production of a bone tissue-like organized extracellular matrix. To identify novel genes which may mediate this sequence, we isolated total RNA from three stages of the cellular differentiation process (proliferation, extracellular matrix maturation, and mineralization), for screening gene expression by the differential mRNA display technique. Of 15 differentially displayed bands that were analyzed by Northern blot analysis, one prominent 310 nucleotide band was confirmed to be proliferation-stage specific. Northern blot analysis showed a 600-650 nt transcript which was highly expressed in proliferating cells and decreased to trace levels after confluency and throughout the differentiation process. We have designated this transcript PROM-1 (for proliferating cell marker). A full length PROM-1 cDNA of 607 bp was obtained by 5′ RACE. A short open reading frame encoded a putative 37 amino acid peptide with no significant similarity to known sequences. Expression of PROM-1 in the ROS 17/2.8 osteosarcoma cell line was several fold greater than in normal diploid cells and was not downregulated when ROS 17/2.8 cells reached confluency. The relationship of PROM-1 expression to cell growth was also observed in diploid fetal rat lung fibroblasts. Hydroxyurea treatment of proliferating osteoblasts blocked PROM-1 expression; however, its expression was not cell cycle regulated. Upregulation of PROM-1 in response to TGF-β paralleled the stimulatory effects on growth as quantitated by histone gene expression. In conclusion, PROM-1 represents a small cytoplasmic polyA containing RNA whose expression is restricted to the exponential growth period of normal diploid cells; the gene appears to be deregulated in tumor derived cell lines. J. Cell. Biochem. 64:106-116. © 1997 Wiley-Liss, Inc.
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  • 160
    ISSN: 0730-2312
    Keywords: osteoblasts ; calvaria ; bone formation ; proliferation ; differentiation ; osteogenesis ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: We have determined the age-related changes in the growth characteristics and expression of the osteoblast phenotype in human calvaria osteoblastic cells in relation with histologic indices of bone formation during postnatal calvaria osteogenesis. Histomorphometric analysis of normal calvaria samples obtained from 36 children, aged 3 to 18 months, showed an age-related decrease in the extent of bone surface covered with osteoblasts and newly synthesized collagen, demonstrating a progressive decline in bone formation during postnatal calvaria osteogenesis. Immunohistochemical analysis showed expression of type I collagen, bone sialoprotein, and osteonectin in the matrix and osteoblasts, with no apparent age-related change during postnatal calvaria osteogenesis. Cells isolated from human calvaria displayed characteristics of the osteoblast phenotype including alkaline phosphatase (ALP) activity, osteocalcin (OC) production, expression of bone matrix proteins, and responsiveness to calciotropic hormones. The growth of human calvaria osteoblastic cells was high at 3 months of age and decreased with age, as assessed by (3H)-thymidine incorporation into DNA. Thus, the age-related decrease in bone formation is associated with a decline in osteoblastic cell proliferation during human calvaria osteogenesis. In contrast, ALP activity and OC production increased with age in basal conditions and in response to 1,25(OH)2, vitamin D3, suggesting a reciprocal relationship between cell growth and expression of phenotypic markers during human postnatal osteogenesis. Finally, we found that human calvaria osteoblastic cells isolated from young individuals with high bone formation activity in vivo and high growth potential in vitro had the ability to form calcified nodular bone-like structures in vitro in the presence of ascorbic acid and β-glycerophosphate, providing a new model to study human osteogenesis in vitro. J. Cell. Biochem. 64:128-139. © 1997 Wiley-Liss, Inc.
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  • 161
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    Journal of Cellular Biochemistry 64 (1997), S. 2-10 
    ISSN: 0730-2312
    Keywords: ICE ; cysteine proteases ; inflammation ; apoptosis ; Ced3 ; secretion ; cell activation ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Interleukin-1β converting enzyme (ICE) is the first enzyme of a new family of cysteine endoproteinases to be isolated and characterized. An overview of the structure and activity of ICE is outlined together with highlights of salient features common to members of each of the family members. J. Cell. Biochem. 64:2-10. © 1997 Wiley-Liss, Inc.
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  • 162
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    Journal of Cellular Biochemistry 64 (1997), S. 27-32 
    ISSN: 0730-2312
    Keywords: interleukin-1β converting enzyme ; gene targeting ; apoptosis ; IL-1β ; IL-1α ; inflammation ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Interleukin-1β converting enzyme (ICE) processes the inactive proIL-1β to the proinflammatory mature IL-1β. ICE belongs to a family of cysteine proteases that have been implicated in apoptosis. To address the biological functions of ICE, we generated ICE-deficient mice through gene targeting technology. ICE-deficient mice developed normally, appeared healthy, and were fertile. Peritoneal macrophages from ICE-deficient mice underwent apoptosis normally upon ATP treatment. Thymocytes from young ICE-deficient mice also underwent apoptosis when triggered by dexamethasone, gamma irradiation, or aging. ICE-deficient mice had a major defect in the production of mature IL-1β and had impaired IL-1α production on LPS stimulation in vitro and in vivo. ICE-deficient mice were resistant to LPS-induced endotoxic shock. J. Cell. Biochem. 64:27-32. © 1997 Wiley-Liss, Inc.
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  • 163
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    Journal of Cellular Biochemistry 64 (1997), S. 19-26 
    ISSN: 0730-2312
    Keywords: ICE ; protease ; interleukin-1 ; cytokine ; programmed cell death ; apoptosis ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Interleukin-1β-converting enzyme (ICE) is a cysteine protease responsible for proteolytic activation of the biologically inactive interleukin-1β precursor to the proinflammatory cytokine. ICE and homologous proteases also appear to mediate intracellular protein degradation during programmed cell death. Inhibition of ICE is a new antiinflammatory strategy being explored by the design of both reversible inhibitors and irreversible inactivators of the enzyme. Such compounds are capable of blocking release of interleukin-1β from human monocytes. ICE inhibitors that cross react against multiple ICE homologs can also block apoptosis in diverse cell types. ICE inhibitors impart protection in vivo from endotoxin-induced sepsis and collagen-induced polyarthritis in rodent models. Further optimization of the current generation of peptidyl ICE inhibitors will be required to produce agents suitable for administration in chronic inflammatory and neurodegenerative diseases. J. Cell. Biochem. 64:19-26. © Wiley-Liss, Inc.
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  • 164
    ISSN: 0730-2312
    Keywords: osteoblast ; differentiation ; replication ; osteoprogenitor ; bone marrow ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Recent studies have demonstrated the existence of a subset of cells in human bone marrow capable of differentiating along multiple mesenchymal lineages. Not only do these mesenchymal stem cells (MSCs) possess multilineage developmental potential, but they may be cultured ex vivo for many passages without overt expression of a differentiated phenotype. The goals of the current study were to determine the growth kinetics, self-renewing capacity, and the osteogenic potential of purified MSCs during extensive subcultivation and following cryopreservation. Primary cultures of MSCs were established from normal iliac crest bone marrow aspirates, an aliquot was cryopreserved and thawed, and then both frozen and unfrozen populations were subcultivated in parallel for as many as 15 passages. Cells derived from each passage were assayed for their kinetics of growth and their osteogenic potential in response to an osteoinductive medium containing dexamethasone. Spindle-shaped human MSCs in primary culture exhibit a lag phase of growth, followed by a log phase, finally resulting in a growth plateau state. Passaged cultures proceed through the same stages, however, the rate of growth in log phase and the final number of cells after a fixed period in culture diminishes as a function of continued passaging. The average number of population doublings for marrow-derived adult human MSCs was determined to be 38 ± 4, at which time the cells finally became very broad and flattened before degenerating. The osteogenic potential of cells was conserved throughout every passage as evidenced by the significant increase in APase activity and formation of mineralized nodular aggregates. Furthermore, the process of cryopreserving and thawing the cells had no effect on either their growth or osteogenic differentiation. Importantly, these studies demonstrate that replicative senescence of MSCs is not a state of terminal differentiation since these cells remain capable of progressing through the osteogenic lineage. The use of population doubling potential as a measure of biological age suggests that MSCs are intermediately between embryonic and adult tissues, and as such, may provide an in situ source for mesenchymal progenitor cells throughout an adult's lifetime. J. Cell. Biochem. 64:278-294. © 1997 Wiley-Liss, Inc.
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  • 165
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    Journal of Cellular Biochemistry 64 (1997), S. 328-341 
    ISSN: 0730-2312
    Keywords: Lysyl oxidase ; type I collagen ; myofibroblast ; fibrosis ; mRNA ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Lysyl oxidase (LO), an extracellular enzyme catalysing the first step of collagen and elastin cross-linking, is transiently expressed by myofibroblasts during fibrosis. A cell model with features of myofibroblast was thus established for studying the regulation of LO. Two clones of the 3T6 fibroblast cell line were selected because 1) they produced a relatively high steady-state level of the three lysyl oxidase mRNAs with the same relative ratio similar to fibrotic tissue and 2) they stably displayed certain features of myofibroblast (α-smooth muscle actin cytoskeleton, bundles of cytoskeletal filaments beneath the cytoplasmic membranes). These clones synthesized predominantly type I collagen fibers and a small amount of type III collagen. Neither type IV collagen nor elastin were observed. The cloning and sequencing of 2,073 bp of the mouse Balb/C LO promoter was performed, allowing the identification around the initiation of transcription of consensus sequences which are found on the COL1 promoters. A series of deletion constructs containing the LO 5′-flanking region ligated to the luciferase gene were transiently transfected into 3T6-5 fibroblasts. The region allowing the maximal activity was found between positions -416 to -192, while the more upstream region negatively regulated the promoter. The -898 to -865 sequence (called LOcol1) displayed 79% of homology with a conserved sequence of murine, rat, and human COL1A1 promoters. This sequence participated to the binding of several nuclear factors within a region (-970 to -784) allowing 50% of inhibition of the LO promoter. Therefore, the level of LO transcription is regulated in 3T6-5 fibroblast by positive and negative cis-acting regulatory elements which might have common features with the COL1A1 promoter. J. Cell. Biochem. 64:328-341.
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  • 166
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    Journal of Cellular Biochemistry 64 (1997), S. 369-375 
    ISSN: 0730-2312
    Keywords: testis ; phospholipase A2 ; cDNA sequence ; in situ hybridization ; mouse ; pla2g2c ; spermatocytes ; meiosis ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: We use in situ hybridization to demonstrate that the testicular expression of a novel, mouse, low molecular weight phospholipase A2 (PLA2 Group IIc) mRNA is specific to cells undergoing meiosis. A complete cDNA (1421 bp) encoding the mouse Pla2g2c gene was generated with reverse transcription-PCR (RT-PCR) and 5′ and 3′ RACE (rapid amplification of cDNA ends) RT-PCR, and its nucleotide sequence was determined. Northern blots of RNA from different tissues revealed a single 1.6 kb transcript only in testis. In situ hybridization indicated that this mouse gene is transcribed mainly in pachytene spermatocytes, secondary spermatocytes, and round spermatids. Expression of the gene is seen in all stages of the seminiferous epithelium, especially in stages VI-VII. J. Cell. Biochem. 64:369-375. © 1997 Wiley-Liss, Inc.
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  • 167
    ISSN: 0730-2312
    Keywords: endothelin-1 ; phospholipase D ; arachidonic acid ; osteoblasts ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: In a previous study, we have shown that endothelin-1 (ET-1) activates phospholipase D independently from protein kinase C in osteoblast-like MC3T3-E1 cells. It is well recognized that phosphatidylycholine hydrolysis by phospholipase D generates phosphatidic acid, which can be further degraded by phosphatidic acid phosphohydrolase to diacylglycerol. In the present study, we investigated the role of phospholipase D activation in ET-1-induced arachidonic acid release and prostaglandin E2 (PGE2) synthesis in osteoblast-like MC3T3-E1 cells. ET-1 stimulated arachidonic acid release dose-dependently in the range between 0.1 nM and 0.1 μM. Propranolol, an inhibitor of phosphatidic acid phosphohydrolase, significantly inhibited the ET-1-induced arachidonic acid release in a dose-dependent manner as well as the ET-1-induced diacylglycerol formation. 1,6-bis-(cyclohexyloxyminocarbonylamino)-hexane (RHC-80267), an inhibitor of diacylglycerol lipase, significantly suppressed the ET-1-induced arachidonic acid release. The pretreatment with propranolol and RHC-80267 also inhibited the ET-1-induced PGE2 synthesis. These results strongly suggest that phosphatidylcholine hydrolysis by phospholipase D is involved in the arachidonic acid release induced by ET-1 in osteoblast-like cells. J. Cell. Biochem. 64:376-381. © 1997 Wiley-Liss, Inc.
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  • 168
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    Journal of Cellular Biochemistry 64 (1997), S. 382-389 
    ISSN: 0730-2312
    Keywords: tissue culture ; vasopressin ; signal transduction ; compartmentation ; internalization ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: We have previously reported the existence of separate hormone-responsive and -unresponsive pools of inositol phospholipids in WRK-1 cells. In order to further explore this concept, we have performed experiments to examine the relationship between the plasma membrane receptor and the pool of phosphatidylinositol (Ptdlns) that is metabolized in response to hormonal stimulation. The results support the following conclusions. 1) The amount of Ptdlns metabolized in WRK-1 cells in response to vasopressin is proportional to the number of receptors occupied; neither prolonged activation with nor readdition of a submaximal concentration of vasopressin induced the same degree of Ptdlns metabolism as a maximal concentration of vasopressin. 2) Dissociation of cytoskeletal structures by incubation with cytochalasin D did not alter the amount of Ptdlns accessed during hormonal stimulation. 3) Accession of Ptdlns from internal membranes does not depend on internalization and recycling of the receptor; cells incubated in potassium-free medium failed to internalize receptor-ligand complexes, yet they accessed the same amount of Ptdlns in response to vasopressin as did control cells. 4) Golgi-mediated phosphatidylinositol transport is not involved in hormone-stimulated phosphoinositide turnover, since brefeldin A, which interferes with Golgi-mediated transport processes, had no effect on the amount of Ptdlns accessed during vasopressin stimulation. 5) Phosphoinositide breakdown and compensatory resynthesis is not a closed process; newly synthesized Ptdlns is not preferentially localized to a hormone-responsive pool but is generally redistributed between responsive and unresponsive pools. J. Cell. Biochem. 64:382-389. © 1997 Wiley-Liss, Inc. This article is a U.S. Government work and, as such, is in the public domain in the United States of America.
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  • 169
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    Journal of Cellular Biochemistry 64 (1997), S. 605-617 
    ISSN: 0730-2312
    Keywords: breast cancer ; proteoglycans ; heparan sulfate ; chondroitin sulfate ; sulfation ; fibroblast growth factor-2 ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The cellular distribution and nature of proteoglycans synthesised by human breast cancer cells in culture were studied. Proteoglycans were labelled with [35S] sulfate, purified, and characterised after ion-exchange chromatography followed by gel-filtration chromatography and treatment with glycosaminoglycan degrading enzymes. Proteoglycans were isolated from the culture medium and from cell layers of the hormono-dependent well-differentiated MCF-7 cell line, the hormono-independent poorly-differentiated MDA-MB-231 and the HBL-100 cell line which is derived from non malignant breast epithelium. HBL-100 and MDA-MB-231 cells produced larger amounts of proteoglycans which had a lower degree of sulfation than MCF-7 cells. Gel-filtration chromatography on Sepharose CL-6B indicated that HBL-100 and MDA-MB-231 cells accumulated cell surface heparan sulfate proteoglycans (HSPG), with a high apparent molecular weight (Kav 0.1). In contrast, the MCF-7 cell monolayers synthesised small sulfated macromolecules (Kav 0.4) which possessed mostly chondroitin sulfate chains. Moreover, considerable differences in the nature of the sulfated proteoglycans released into the culture medium of these breast epithelial cell lines were observed. MCF-7 cells released into the culture medium HSPG as the main proteoglycan component while MDA-MB-231 and HBL-100 cells released mainly chondroitin sulfate proteoglycans. In these three cell lines, medium-released sulfated macromolecules have a higher hydrodynamic size than cell-associated ones. Proteoglycans purified by ion-exchange chromatography were tested for their ability to bind 125I FGF-2. We demonstrated that HBL-100 and MDA-MB-231 cells bind more FGF-2 to their heparan sulfate proteoglycans than MCF-7 cells. Taken together, these results suggest that differences in proteoglycan synthesis of human breast epithelial cells could be responsible for differences in their proliferative and/or invasive properties. J. Cell. Biochem. 64:605-617. © 1997 Wiley-Liss, Inc.
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  • 170
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    Journal of Cellular Biochemistry 64 (1997), S. 499-504 
    ISSN: 0730-2312
    Keywords: protein kinase CK2 ; nuclear matrix ; cytoskeleton ; chromatin ; intermediate filaments ; core filaments ; carcinoma ; prostate ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Nuclear matrix (NM) plays roles of fundamental structural and functional significance as the site of replication, transcription, and RNA processing and transport, acting as an anchor or attachment site for a variety of enzymes and other proteins involved in these activities. We have previously documented that protein kinase CK2 translocates from the cytosol to the nucleus, where it associates preferentially with chromatin and NM, in response to certain growth stimuli. Considering that characteristics of the isolated NM can depend on the procedure employed for its isolation, we compared three standard methods for NM preparation to confirm the association of intrinsic CK2 with this structure. Our data suggest that the method used for isolating the NM can quantitatively influence the measurable NM-associated CK2. However, all three methods employed yielded qualitatively similar results with respect to the stimulus-mediated modulation of NM-associated CK2, thus further supporting the notion that NM is an important site for physiologically relevant functions of CK2. In addition, core filaments and cytoskeleton that were isolated by two of the preparative methods had a small but significant level of associated CK2 activity. J. Cell. Biochem. 64:499-504. © 1997 Wiley-Liss, Inc. This article is a U.S. Government work and, as such, is in the public domain in the United States of America.
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  • 171
    ISSN: 0730-2312
    Keywords: signal transduction ; stomach ; hormones ; phospholipase C ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: In gastric chief cells, agents that activate protein kinase C (PKC) stimulate pepsinogen secretion and phosphorylation of an acidic 72-kDa protein. The isoelectric point and molecular mass of this protein are similar to those for a common PKC substrate; the MARCKS (for Myristoylated Alanine-Rich C Kinase Substrate) protein. We examined expression and phosphorylation of the MARCKS-like protein in a nearly homogeneous suspension of chief cells from guinea pig stomach. Western blotting of fractions from chief cell lysates with a specific MARCKS antibody resulted in staining of a myristoylated 72-kDa protein (pp72), associated predominantly with the membrane fraction. Using permeabilized chief cells. we examined the effect of PKC activation (with the phorbol ester PMA), in the presence of basal (100 nM) or elevated cellular calcium (1 μM), on pepsinogen secretion and phosphorylation of the 72-kDa MARCKS-like protein. Secretion was increased 2.3-, 2.6-, and 4.5-fold by incubation with 100 nM PMA, 1 μM calcium, and PMA plus calcium, respectively. A PKC inhibitor (1 μM CGP 41 251) abolished PMA-induced secretion, but did not alter calcium-induced secretion. This indicates that calcium-induced secretion is independent of PKC activation. Chief cell proteins were labeled with 32P-orthophosphate and phosphorylation of pp72 was detected by autoradiography of 2-dimensional polyacrylamide gels. In the presence of basal calcium PMA (100 nM) caused a 〉 two-fold increase in phosphorylation of pp72. Without PMA, calcium did not alter phosphorylation of pp72. However, 1 μM calcium caused an approx. 50% attenuation of PMA-induced phosphorylation of pp72. Experiments with a MARCKS “phosphorylation/calmodulin binding domain peptide” indicated that calcium/calmodulin inhibits phosphorylation of pp72 by binding to the phosphorylation/calmodulin binding domain and not by inhibiting PKC activity. These observations support the hypothesis that, in gastric chief cells, interplay between calcium/calmodulin binding and phosphorylation of a common domain on the 72-kDa MARCKS-like protein plays a role in modulating pepsinogen secretion. J. Cell. Biochem. 64:514-523. © 1997 Wiley-Liss, Inc.
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  • 172
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    Journal of Cellular Biochemistry 64 (1997), S. 565-572 
    ISSN: 0730-2312
    Keywords: transcriptional regulation ; HIV-1 ; replication ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: A cellular transcriptional factor initially identified as the c-myc promoter binding protein (MBP-1) was subsequently characterized as a cell regulatory protein with multifunctional activities. In this study, the role of MBP-1 on human immunodeficiency virus type-1 (HIV-1) transcriptional activity was investigated. MBP-1 showed inhibition of HIV-1 long terminal repeat (LTR)-directed chloramphenicol acetyl transferase (CAT) activity in a transient cotransfection assay. Deletion of upstream elements of the HIV-1 LTR, including the nuclear factor kappa B (NF-kB) and Sp1 binding sites, did not affect the MBP-1 mediated suppression of HIV-1 LTR. The core promoter of the HIV-1 appeared to be the primary sequence involved in MBP-1 mediated inhibition. In the presence of HIV-1 TAR sequence and Tat protein, MBP-1 did not inhibit the viral promoter activity. In addition, cotransfection experiments with HIV-1 LTR and deletion mutants of MBP-1 suggested that the carboxyl terminal half of MBP-1 suppresses the HIV-1 promoter activity. Exogenous expression of MBP-1 showed suppression of HIV-1 replication in acutely infected cells and in cells cotransfected with a molecular clone of HIV-1. These results suggest that exogenous expression of MBP-1 plays an important role in the regulation of HIV-1 replication in infected cells. J. Cell. Biochem. 64:565-572. © 1997 Wiley-Liss, Inc.
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  • 173
    ISSN: 0730-2312
    Keywords: chondrocytes ; calcium ; calmodulin ; binding proteins ; gene expression ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Insulin-like growth factor-1, IGF-1, is believed to be an important anabolic modulator of cartilage metabolism whose action is mediated by high affinity cell surface receptors and bioactivity and bioavailability regulated, in part, by IGF-1 binding proteins (IGFBPs). Prostaglandin E2 (PGE2) stimulates collagen and proteoglycan synthesis in cartilage via an autocrine feedback loop involving IGF-1. We determined whether the eicosanoid could regulate IGFBP-4, a major form expressed by chondrocytes and, as such, act as a modifier of IGF-1 action at another level. Using human articular chondrocytes in high-density primary culture, Western and Western ligand blotting to measure secreted IGFBP-4 protein, and Northern analysis to monitor IGFBP-4 mRNA levels, we demonstrated that PGE2 provoked a 2.7 ± 0.3- and 3.8 ± 0.5- (n = 3) fold increase in IGFBP-4 mRNA and protein, respectively. This effect was reversed by the Ca++ channel blocker, verapamil, and the Ca++/calmodulin inhibitor, W-7. The Ca++ ionophore, ionomycin, mimicked the effects of PGE2. The phorbol ester, PMA, which activated phospholipid-dependent protein kinase C (PKC) in chondrocytes, had no effect on IGFBP-4 production. Cyclic AMP mimetics and PKA activators, IBMX, and Sp-cAMP, inhibited the expression of the binding protein as did the PGE2 secretagogue, interleukin-1β (IL-β). The inhibitory effect of the latter cytokine was mediated by a erbstatin/genistein (tyrosine) sensitive kinase. Dexamethasone, an inhibitor of cyclooxygenase (COX-2) expression and PGE2 synthesis, down-regulated control, constitute levels of IGFBP-4 mRNA and protein, eliminating the previously demonstrated possibility of cross-talk between glucocorticoid receptor (GR) and PGE2-receptor signalling pathways. The results suggest that extracellular signals control IGFBP-4 production by a number of different transducing networks with changes in Ca++ and calmodulin activity exerting a strong positive influence, possibly maintaining the constitutivity of IGFBP-4 synthesis under basal conditions. PGE2 activation of the IGF-1/IGFBP axis may play a pivotal role in the metabolism of cartilage and possibly connective tissues in general. Eicosanoid biosynthesis may be a rate-limiting step in cartilage repair processes. J. Cell. Biochem. 65:408-419. © 1997 Wiley-Liss, Inc.
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  • 174
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    Journal of Cellular Biochemistry 65 (1997), S. 460-468 
    ISSN: 0730-2312
    Keywords: placenta ; planar-polar compounds ; hCG ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Dimethyl sulfoxide (DMSO) exerts a number of biological effects, the most frequently cited being induction of cell differentiation. The compound also increases invasiveness and metastatic potential. In contrast to the many reports of DMSO-induced cell differentiation, we report here that DMSO inhibits the morphological differentiation of human cytotrophoblast cells to syncytiotrophoblast, as revealed by immunofluorescence staining for desmosomal protein and nuclei. Cytotrophoblast cells treated with DMSO under differentiation-inducing conditions remained mononucleated with intense desmosomal staining. The effect was dose dependent, with a maximal effect seen at 1.5% DMSO. Concentrations of ≤0.5% had no effect and concentrations 〉2% were cytotoxic. In addition to these morphological changes, DMSO inhibited secretion of human chorionic gonadotropin in a dose-dependent manner. At a concentration of 1.5%, DMSO inhibited secretion by 70%. If cytotrophoblast cells were cultured in the presence of DMSO and then switched to DMSO-free medium, they proceeded to differentiate normally. While the precise mechanism of action remains unknown, judicious use of DMSO may be a useful tool for studying and manipulating the differentiation of human trophoblast cells in vitro. The findings also indicate that care should be used in interpreting results obtained using DMSO as a carrier in drug and inhibitor studies. J. Cell Biochem. 65:460-468. © 1997 Wiley-Liss Inc.
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  • 175
    ISSN: 0730-2312
    Keywords: tumor necrosis factor-alpha ; G protein ; phosphatidylinositol-specific phospholipase C ; protein kinases ; osteoblasts ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The role(s) of protein kinases in the regulation of G protein-dependent activation of phosphatidylinositol-specific phospholipase C by tumor necrosis factor-alpha was investigated in the osteoblast cell line MC3T3-E1. We have previously reported the stimulatory effects of tumor necrosis factor-alpha and A1F4-, an activator of G proteins, on this phospholipase pathway documented by a decrease in mass of PI and release of diacylglycerol. In this study, we further explored the mechanism(s) by which the tumor necrosis factor or A1F4- -promoted breakdown of phosphatidylinositol and the polyphosphoinositides by phospholipase C is regulated. Tumor necrosis factor-alpha was found to elicit a 4-5-fold increase in the formation of [3H]inositol-1,4-phosphate and [3H]inositol-1,4,5-phosphate; and a 36% increase in [3H]inositol-1-phosphate within 5 min in prelabeled cells. [3H]inositol-4-phosphate, a metabolite of [3H]inositol-1,4-phosphate and [3H]inositol-1,4,5-phosphate, was found to be the predominant phosphoinositol product of tumor necrosis factor-alpha and A1F4- -activated phospholipase C hydrolysis after 30 min. In addition, the preincubation of cells with pertussis toxin decreased the tumor necrosis factor-induced release of inositol phosphates by 53%. Inhibitors of protein kinase C, including Et-18-OMe and H-7, dramatically decreased the formation of [3H]inositol phosphates stimulated by either tumor necrosis factor-alpha or A1F4- by 90-100% but did not affect basal formation. The activation of cAMP-dependent protein kinase, or protein kinase A, by the treatment of cells with forskolin or 8-BrcAMP augmented basal, tumor necrosis factor-alpha and A1F4--induced [3H]inositol phosphate formation. Therefore, we report that protein kinases can regulate tumor necrosis factor-alpha-initiated signalling at the cell surface in osteoblasts through effects on the coupling between receptor, G-protein and phosphatidylinositol-specific phospholipase C. J. Cell. Biochem. 65:198-208. © 1997 Wiley-Liss, Inc.
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  • 176
    ISSN: 0730-2312
    Keywords: c-jun ; junD ; cardiomyopathy ; myosin ; gene expression ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The proto-oncogenes c-jun and junD are closely related transcriptional factors with opposing actions on cell growth and division. Expression of c-jun rapidly increases as cells enter the cell cycle. Levels of c-jun are also increased in the early stages of experimental cardiac hypertrophy and failure but expression decreases with time. In contrast, junD accumulates in quiescent cells. Expression in end-stage cardiomyopathy has not been studied. Steady-state levels of c-jun and junD mRNA were determined in failing human myocardium (obtained at the time of cardiac transplantation) and in control myocardium from patients who died of noncardiac causes. Relative expression was normalized for glyceraldehyde-3-phosphate dehydrogenase expression. Levels of junD were almost four-fold depressed in myocardium from myopathic hearts (2.1 ± 0.27, × ± SE; n = 20) vs. the controls (7.7 ± 1.1; n = 3). Levels of c-jun were similar in both myopathic and control hearts. Relative expression of beta-myosin heavy chain was the same in both myopathic and control hearts. Levels of junD were still found to be depressed in the myopathic hearts after normalization for myosin heavy chain gene expression. We conclude that c-jun and junD are differentially regulated in end-stage human cardiomyopathy with expression of junD being decreased while relative levels of c-jun mRNA remain unchanged. Further studies are needed to determine the role of junD down-regulation in the development and/or maintenance of the abnormalities present in end-stage heart disease. J. Cell. Biochem. 65:245-253. © 1997 Wiley-Liss, Inc.
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  • 177
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    Journal of Cellular Biochemistry 66 (1997), S. 9-15 
    ISSN: 0730-2312
    Keywords: breast cancer ; well/poorly differentiated human breast cancer cells ; estrogen receptor ; nuclear matrix proteins ; diagnostic indicators ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The nuclear matrix, besides providing the structural support of the nucleus, is involved in various cellular functions of the nucleus. Nuclear matrix proteins (NMPs), which are both tissue- and cell type-specific, are altered with transformation and state of differentiation. Furthermore, NMPs have been identified as informative markers of disease states. Here, the NMP profiles from human breast cancer cell lines and breast tumours were analyzed using two-dimension gel electrophoresis. We identified NMPs that are associated with well and poorly differentiated human breast cancer cells in vitro and in vivo. Five NMPs (NMBC 1-5) were found to be exclusive for well-differentiated human breast cancer cells, while one NMP (NMBC-6) was found to be present only in poorly differentiated human breast cancer cells. The identification of these proteins suggests the potential use of nuclear matrix proteins as prognostic indicators. J. Cell. Biochem. 66:9-15, 1997. © 1997 Wiley-Liss, Inc.
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  • 178
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    Journal of Cellular Biochemistry 66 (1997), S. 43-53 
    ISSN: 0730-2312
    Keywords: rho A ; C3 exoenzyme ; focal adhesion ; costamere ; myofibrillogenesis ; cardiomyocyte ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The aim of this study was to provide morphological evidence for the presence of rho A protein in developing cardiomyocytes and to investigate its possible role in myofibrillogenesis. Immunostaining with a monoclonal anti-rho antibody gave a diffuse pattern in the cytosol of cultured cardiomyocytes. Introduction of C3 exoenzyme into the cells by electroporation was used to inactivate rho A protein by ADP-ribosylation. An immunostaining with anti-vinculin, anti-talin, and anti-integrin antibodies showed the focal adhesions in electroporation control cardiomyocytes to be evenly distributed in the ventral sarcolemma; the costameric structure was also detected using these antibodies. In contrast, in C3 exoenzyme treated cells, focal adhesions were disassembled and costamere were absent; in addition, β-actin-positive, non-striated fibrils were lost and assembly of M-protein, titin, and α-actinin into myofibrils was poor, as shown by diffuse and filamentous staining pattern. C3 exoenzyme treatment had a less marked effect on mature cardiomyocytes than on immature cells; in this case, cells became distorted and few myofibrils were seen. The intensity of anti-phosphotyrosine antibody staining of the focal adhesion was also decreased or diffuse in C3 exoenzyme-treated cardiomyocytes, suggesting dephosphorylation of focal adhesion components. We therefore conclude that small G protein rho A plays an important role in myofibril assembly in cardiomyocytes. J. Cell. Biochem. 66:43-53, 1997. © 1997 Wiley-Liss, Inc.
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  • 179
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    Journal of Cellular Biochemistry 66 (1997), S. 153-164 
    ISSN: 0730-2312
    Keywords: thermotolerance ; molecular chaperone ; breast cancer and CHO cells ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Constitutive expression of human hsp27 resulted in a 100-fold increase in survival to a single lethal heat shock in CHO cells without effecting the development of thermotolerance. A possible mechanism for the thermoprotective function of hsp27 may be increased recovery of protein synthesis and RNA synthesis following a heat shock. A lethal heat shock (44°C, 30 min) results in a 90% reduction in the rate of protein synthesis in non-tolerant cells. Control transfected cells recovered protein synthesis to a pre-heat shock rate 10 h after the heat shock; while cell lines that constitutively express human hsp27 recovered 6 h after the heat shock. Thermotolerant cells had a 50% reduction in protein synthesis, which recovered within 7 h following the heat shock. The same lethal heat shock (44°C, 30 min) reduced RNA synthesis by 60% in the transfected cell lines, with the controls recovering in 7 h; while the hsp27 expressing cell lines recovered within 5 h. Thermotolerant cells had a 40% reduction in RNA synthesis and were able to recover within 4 h. The enhanced ability of hsp27 to facilitate recovery of protein synthesis and RNA synthesis following a heat shock may provide the cell with a survival advantage. J. Cell. Biochem. 66:153-164, 1997. © 1997 Wiley-Liss Inc.
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  • 180
    ISSN: 0730-2312
    Keywords: vitamin D receptor ; retinoid X receptor ; transactivation systems ; vitamin D regulation ; Saccharomyces cerevisiae ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The transcription factors of the nuclear hormone receptor familiy regulate gene expression via a complex network of macromolecular interactions. The ligand dependent activity of the vitamin D receptor is of particular interest because it modulates gene expression by the heterodimeric interaction with retinoid X receptors. We report here that individual functions of the vitamin D receptor including DNA-binding, homo- and heterodimerization and transactivation can be reconstituted in the yeast Saccharomyces cerevisiae. Interestingly, the simultaneous expression of the native vitamin D receptor and the retinoid X receptor β resulted in a ligand independent transactivation of the lacZ reporter gene coupled to a mouse osteopontin vitamin D response element. However, homodimerization of the vitamin D receptor and heterodimerization were strongly enhanced upon ligand binding, when the receptors were expressed as fusion proteins with the Gal4 transcription factor in a yeast two-hybrid system. Furthermore, transactivating activity of a Gal4-fused vitamin D receptor was induced by vitamin D in a one-hybrid system devoid of retinoid X receptors. In addition, both Gal4-based systems behaved similar with regard to their dose-dependent response to vitamin D and related compounds when compared to the transcriptional activity of the vitamin D receptor in transiently transfected MCF-7 cells. Our results point out that specific ligands strongly enhanced receptor dimerization and induced transactivation in yeast and in MCF-7 cells. The constitutive transactivation by vitamin D receptor-retinoid X receptor heterodimers in yeast, depending on DNA binding of the receptors, strongly argues for the existence of cofactors, which are absent in yeast, but play a fundamental role in gene regulation in higher eukaryotic organisms. J. Cell. Biochem. 66:184-196, 1997. © 1997 Wiley-Liss, Inc.
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  • 181
    ISSN: 0730-2312
    Keywords: nerve growth factor ; fibroblast growth factor ; K-252a ; staurosporine ; p140trk ; receptor ; signal transduction ; tyrosine kinase ; transfection ; overexpression ; PC12/endothelial hybrid cells ; DNA synthesis ; proliferation ; differentiation ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Nerve growth factor (NGF) regulates proliferation, differentiation, and survival of sympathetic and sensory neurons through the tyrosine kinase activity of its receptor, p140trk. These biological effects of NGF depend upon the signal-mediating function of p140trk substrates which are likely to differ from cell to cell. To define p140trk receptor substrates and the details of signalling by NGF in the hybrid cell PC12EN, we stably transfected cultures with a vector encoding a full-length human p140trk cDNA sequence. Two stably transfected clones, one expressing p140trk with higher affinity (PC12EN-trk3; Kd 57.4 pM, Bmax 9.7 pmole/mg) and one expressing p140trk with a lower affinity (PC12EN-trk1; Kd 392.4 pM, Bmax 5.7 pmole/mg) were generated. Radioreceptor assays indicate that transfected p140trk receptors show slow NGF-dissociation kinetics, are resistant to trypsin or Triton X-100 treatment, are specific for NGF compared to other neurotrophins, and are internalized or downregulated as are native PC12 p140trk receptors. NGF stimulates p140trk tyrosine phosphorylation in a dose- (0.01-10 ng/ml) and time- (5-120 min) dependent manner, and tyrosine phosphorylation was inhibited by 200-1,000 nM K-252a. NGF-induced Erk stimulation for 60 min was assessed using myelin basic protein as a substrate. NGF treatment also led to an increased phosphorylation of p70S6k, SNT, and phospholipase Cγ, demonstrating that the major NGF-stimulated signalling pathways found in other cells are activated in PC12EN-trk cells. Staurosporine (5-50 nM) rapidly and dBcAMP (1 mM) more slowly, but not NGF induced morphological differentiation in PC12EN-trk cells. Rather, NGF treatment in low-serum medium stimulated a 1.3- and 2.3-fold increase in DNA synthesis measured by [3H]thymidine incorporation in PC12EN-trk1 and PC12EN-trk3, respectively. These data highlight the functionality of the transfected p140trk receptors and indicate that these transfected cells may serve as a novel cellular model facilitating the study of the mitogenic properties of NGF signalling and the transducing role of the p140trk receptor substrates. J. Cell. Biochem. 66:229-244. © 1997 Wiley-Liss, Inc. This article is a U.S. Government work and, as such, is in the public domain in the United States of America.
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  • 182
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    Journal of Cellular Biochemistry 65 (1997), S. 574-590 
    ISSN: 0730-2312
    Keywords: endothelial cells ; tissue factor pathway inhibitor (TFPI) ; heparan sulfate proteoglycans ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: A synthetic peptide, which was shown to bind extracellular matrix heparan sulfate chains with a high degree of affinity and specificity [Colburn et al. (1996): Arch Biochem Biophys 325:129-138], has now been found to promote the transfer and the deposition of endothelial cell surface proteoglycans in the extracellular matrix. The peptide also induces preferential binding of extracellular matrix heparan sulfate proteoglycans, which have been added to the supernatant growth medium, and the requirement for its presence is stringent in that only a negligible amount of proteoglycans are bound to the cell layer in the absence of the peptide. In addition, antibodies directed against the peptide detect the accumulation of the peptide in the matrix compartment where the peptide is found associated with the proteoglycans transferred from the cell surface.The sequence of events induced by the peptide appears to be an extension of a naturally occurring process since proteoglycans with properties similar to those of the species ordinarily present in the extracellular matrix have been observed to transfer from the cell surface to the matrix during a pulse-chase experiment. We suggest that formation of the complex peptide-proteoglycan with consequent displacement of the proteoglycan from its anchorage on the cell, initiates the process of transfer of the heparan sulfate-bound peptide from the cell surface to the extracellular matrix. J. Cell. Biochem. 65:574-590. © 1997 Wiley-Liss Inc.
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  • 183
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    Journal of Cellular Biochemistry 66 (1997), S. 37-42 
    ISSN: 0730-2312
    Keywords: archaeon ; ADPribose ; glycation ; ADPribose transferase ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: In the archaeon Sulfolobus solfataricus, protein ADPribosylation by free ADPribose was demonstrated by testing both [adenine-14C(U)]ADPR and [adenine- 14C(U)]NAD as substrates. The occurrence of this process was shown by using specific experimental conditions. Increasing the incubation time and lowering the pH of the reaction mixture enhanced the protein glycation by free ADPribose. At pH 7.5 and 10 min incubation, the incorporation of free ADPribose into proteins was highly reduced. Under these conditions, the autoradiographic pattern showed that, among the targets of ADPribose electrophoresed after incubation with 32P-NAD, the proteins modified by free 32P-ADPribose mostly corresponded to high molecular mass components. Among the compounds known to inhibit the eukaryotic poly-ADPribose polymerase, only ZnCl2 highly reduced the ADPribose incorporation from NAD into the ammonium sulphate precipitate. A 20% inhibition was measured in the presence of nicotinamide or 3-aminobenzamide. No inhibition was observed replacing NAD with ADPR as substrate. J. Cell. Biochem. 66: 37-42, 1997. © 1997 Wiley-Liss, Inc.
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  • 184
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    New York, N.Y. : Wiley-Blackwell
    Journal of Cellular Biochemistry 66 (1997), S. 65-76 
    ISSN: 0730-2312
    Keywords: chylomicron ; very low density lipoprotein ; high density lipoprotein ; apoprotein B-100 ; apoprotein B-48 ; apoprotein A-I ; fat transport ; ontogeny ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Studies employing human fetal intestine have yielded much interesting information on the role of polarized enterocytes in fat absorption and transport. Using the organ culture model, we examined the influence of hydrocortisone on the synthesis and secretion of lipids and lipoproteins. Human jejunal explants were cultured for 5 days at 37°C in serum-free medium containing either [14C]-oleic acid or [14C]-acetate, alone or supplemented with hydrocortisone (25 or 50 ng/ml). The uptake of [14C]-oleic acid was associated with the production of triglycerides, phospholipids, and cholesteryl esters, which were all affected by hydrocortisone. This hormonal agent (50 μg) led to the marked reduction of secreted triglycerides (43%, P 〈 0.01), phospholipids (39%, P 〈 0.01), and cholesteryl esters (36%, P 〈 0.05) without altering the characteristic distribution of tissue and medium lipid classes. Similarly, hydrocortisone significantly (P 〈 0.01) decreased (∼60%) the incorporation of [14C]-acetate into secreted free and esterified cholesterol in the medium. With [14C]-oleic acid as a precursor, hydrocortisone significantly diminished the delivery of chylomicrons and very low density lipoproteins to the medium while consistently enhancing the secretion of high density lipoproteins. In parallel, [35S]-methionine pulse-labeling of jejunal explants revealed the concomitant inhibitory effect of hydrocortisone on apo B-100 synthesis and hydrocortisone's stimulatory effect on apo B-48 and apo A-I. These studies suggest that glucocorticoids play a critical role in lipoprotein processing during intestinal development. J. Cell. Biochem. 66:65-76 1997. © 1997 Wiley-Liss, Inc.
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  • 185
    ISSN: 0730-2312
    Keywords: deletion mutants ; ors12 ; replication activity ; mammalian origin ; autonomous replication ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: We have generated a panel of deletion mutants of ors12 (812-bp), a mammalian origin of DNA replication previously isolated by nascent strand extrusion from early replicating African Green monkey (CV-1) DNA. The deletion mutants were tested for their replication activity in vivo by the bromodeoxyuridine substitution assay, after transfection into HeLa cells, and in vitro by the DpnI resistance assay, using extracts from HeLa cells. We identified a 215-bp internal fragment as essential for the autonomous replication activity of ors12. When subcloned into the vector pML2 and similarly tested, this subfragment was capable of autonomous replication in vivo and in vitro. Several repeated sequence motifs are present in this 215-bp fragment, such as TGGG(A) and G(A)AG (repeated four times each); TTTC, AGG, and CTTA (repeated 3 times each); the motifs CACACA and CTCTCT, and two imperfect inverted repeats, 22 and 16 bp long, respectively. The overall sequence of the 215-bp fragment is G/C-rich (50.2%), by comparison to the 186-bp (33.5% G/C-rich) minimal sequence required for the autonomous replication activity of ors8, another functional ors that was similarly isolated and characterized. J. Cell. Biochem. 66:87-97, 1997. © 1997 Wiley-Liss, Inc.
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  • 186
    ISSN: 0730-2312
    Keywords: AML-3 ; transcription factors ; partitioning ; osteoblast differentiation ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The subnuclear location of transcription factors may functionally contribute to the regulation of gene expression. Several classes of gene regulators associate with the nuclear matrix in a cell type, cell growth, or cell cycle related-manner. To understand control of nuclear matrix-transcription factor interactions during tissue development, we systematically analyzed the subnuclear partitioning of a panel of transcription factors (including NMP-1/YY-1, NMP-2/AML, AP-1, and SP-1) during osteoblast differentiation using biochemical fractionation and gel shift analyses. We show that nuclear matrix association of the tissue-specific AML transcription factor NMP-2, but not the ubiquitous transcription factor YY1, is developmentally upregulated during osteoblast differentiation. Moreover, we show that there are multiple AML isoforms in mature osteoblasts, consistent with the multiplicity of AML factors that are derived from different genes and alternatively spliced cDNAs. These AML isoforms include proteins derived from the AML-3 gene and partition between distinct subcellular compartments. We conclude that the selective partitioning of the YY1 and AML transcription factors with the nuclear matrix involves a discriminatory mechanism that targets different classes and specific isoforms of gene regulatory factors to the nuclear matrix at distinct developmental stages. Our results are consistent with a role for the nuclear matrix in regulating the expression of bone-tissue specific genes during development of the mature osteocytic phenotype. J. Cell. Biochem. 66:123-132, 1997. © 1997 Wiley-Liss, Inc.
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  • 187
    ISSN: 0730-2312
    Keywords: cell shape ; cytoskeleton ; stress fibers ; autophagy ; vacuolar degradation ; hyaluronan ; chondroitin sulfate ; keratan sulfate ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The activity of ornithine decarboxylase, the key enzyme in the synthesis of polyamines, is essential for proliferation and differentiation of all living cells. Two inhibitors of ornithine decarboxylase, α-difluoromethylornithine (DFMO) and 1-aminooxy-3-aminopropane (APA), caused swelling of endoplasmic reticulum (ER) and medial and trans Golgi cisternae, and the disappearance of stress fibers, as visualized by staining with fluorescent concanavalin A (ConA), C6-NBD-ceramide or wheat germ agglutinin (WGA), and phalloidin, respectively. In contrast, the pattern of microtubules, stained with a β-tubulin antibody, was not affected. Rough ER seemed to be especially affected in polyamine deprivation forming whorls and involutions, which were observed by transmission electron microscopy. Since ER and Golgi apparatus are vital parts of the glycosylation and secretory machinery of the cell, we tested the ability of these structurally altered cell organelles to synthesize proteoglycans using [3H]glucosamine and [35S]sulfate as precursors. The total incorporation rate into proteoglycans and hyaluronan was not reduced in polyamine-deprived cells, suggesting that the total glycosylation capacity of cells was not affected. However, the synthesis of a high molecular weight proteoglycan containing chondroitin and keratan sulfate was completely inhibited. The remodeling of cytoskeleton and rough endoplasmic reticulum in polyamine deprivation may perturb the synthesis and secretion of the components of membrane skeleton and of the extracellular matrix, e.g., proteoglycans. Rough ER and cytoskeleton may be the targets where polyamines affect cell proliferation and differentiation. J. Cell Biochem. 66:165-174, 1997. © 1997 Wiley-Liss, Inc.
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  • 188
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    New York, N.Y. : Wiley-Blackwell
    Journal of Cellular Biochemistry 66 (1997), S. 219-228 
    ISSN: 0730-2312
    Keywords: DNA strand breaks ; superoxide ; granulocytes ; human ; okadaic acid ; fluoride ; staurosporine ; phorbol myristate acetate ; hydrogen peroxide ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Phorbol ester treatment of granulocytes triggers release of superoxide (O2-) and a concomitant burst of DNA strand breaks. The relationship between the amount of O2- and the number of DNA breaks has not previously been explored. To quantify the relatively large amount of O2- generated over a 40-min period by 1 × 106 granulocytes/mL, a discontinuous “10-min pulse” method employing cytochrome c was used; 140 nmol O2- per 1 × 106 cells was detected. DNA strand breaks were quantified by fluorimetric analysis of DNA unwinding (FADU). To vary the level of O2- released by cells, inhibitors of the respiratory burst were used. Sodium fluoride (1-10 mM) and staurosporine (2-10 nM) both inhibited O2- production. In both cases, however, inhibition of strand breakage was considerably more pronounced than inhibition of O2-. Zinc chloride (50-200 μM) inhibited both O2- and DNA breaks, approximately equally. Dinophysistoxin-1 (okadaic acid) inhibited O2- production more effectively than it inhibited DNA breaks. O2- dismutes to H2O2, a reactive oxygen species known to cause DNA breaks. The addition of catalase to remove extracellular H2O2 had no effect on DNA breakage. Using pulse field gel electrophoresis, few double-stranded breaks were detected compared to the number detected by FADU, indicating that about 95% of breaks were single-stranded. The level of DNA breaks is not directly related to the amount of extracellular O2- or H2O2 in PMA-stimulated granulocytes. We conclude that either an intracellular pool of these reactive oxygen species is involved in breakage or that the metabolic inhibitors are affecting a novel strand break pathway. J. Cell. Biochem. 66:219-228, 1997. © 1997 Wiley-Liss Inc.
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  • 189
    ISSN: 0730-2312
    Keywords: p53 ; HPV ; apoptosis ; mitochondrial permeability transition ; ICE-like proteases ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Infection of cervical epithelial cells with certain high risk HPV genotypes is thought to play an etiologic role in the development of cervical cancer. In particular, HPV type 16 and 18 early protein 6 (E6) is thought to contribute to epithelial transformation by binding to the tumor suppressor protein p53, targeting it for rapid proteolysis, resulting in loss of its cell cycle arrest and apoptosis-inducing activities. Recent data indicate that factors responsible for triggering apoptosis reside in the cytoplasm of cells, and not in the nucleus. In particular, the findings that mitochondria are required in certain cell-free models for induction of apoptosis and that bcl-2 is localized to mitochondria have focused attention on the role of the mitochondrial membrane permeability transition (MPT) in apoptosis. Here we present data to indicate that HPV 16 E6 expression sensitizes cells to MPT-induced apoptosis. We also report that HPV 16 E6 sensitization of cells to MPT-induced apoptosis occurs only in the presence of wildtype (wt) p53 expression. The extent of apoptosis induced by atractyloside (an inducer of the MPT) in normal, temperature-sensitive (ts) p53, and HPV-16 E6 transfected J2-3T3 cells, and the HPV expressing cervical carcinoma cell lines SiHa, Hela and CaSki was determined. C33A cells, which express mutant p53 but not HPV, were also exposed to atractyloside in the presence or absence of HPV 16 E6 expression. Dose-dependent apoptosis induced by atractyloside in normal J2-3T3 cells and cervical carcinoma cells was measured by loss of cell viability, nuclear fragmentation and DNA laddering. The sensitivity of cells to atractyloside-induced apoptosis was found to be: HPV 16 E6-J2-3T3 〉 CaSki 〉 normal-J2-3T3 cells ≈ ts p53-J2-3T3 ≈ vector-J2-3T3 cells 〉 Hela 〉 SiHa 〉 C33A ≈ C33A 16 E6. Cyclosporin A (CsA), an inhibitor of the MPT, and ICE-I, a protease inhibitor, provided protection against atractyloside-induced apoptosis. These findings indicate that: 1) high risk HPV 16 E6 protein is capable of sensitizing cells to apoptosis; 2) HPV 16 E6 sensitization of cells to atractyloside-induced apoptosis occurs in a p53-dependent fashion; 3) the target of HPV 16 E6 sensitization of cells to atractyloside-induced apoptosis is the mitochondria; and 4) HPV 16 E6 sensitization of cells to atroctycoside-induced apoptosis involves an ICE-like protease-sensitive mechanism, regulating the onset of the MPT. These findings constitute the first evidence that mitochondria play a role in HPV 16 E6 modulation of apoptosis. J. Cell. Biochem. 66:245-255. © 1997 Wiley-Liss, Inc.
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  • 190
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    Journal of Cellular Biochemistry 66 (1997), S. 309-321 
    ISSN: 0730-2312
    Keywords: oncogenes ; tumor suppressors ; human papillomavirus type 16 ; smoking cofactor ; immortalization ; tumorigenesis ; mRNA ; proteins ; oncogenesis ; senescence ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: We studied the molecular mechanism of successive multistep cervical carcinogenic progression with our previously established in vitro model system. This system was composed of primary human endocervical cells (HEN), two lines of HEN immortalized by HPV16 and their counterparts subsequently malignantly transformed by cigarette smoke condensate (CSC). The expression was examined of diverse cellular genes associated with oncogenesis and senescence, especially for cervical cancer. Consistent results were seen for the pairs of immortalized and malignantly transformed lines. Immortalization of HEN by HPV16 resulted in enhanced expression of H-ras, c-myc, B-myb, p53, p16INK4 and PCNA mRNA; enhanced expression of p16 and PCNA proteins; decreased expression of WAF1/p21/Cip1/Sid1 and fibronectin mRNA; and decreased p53 protein. On the other hand, the CSC-transformed counterparts of HPV16-immortalized cells had up-regulated levels of B-myb, p53 and WAF1 mRNA and p53 protein. Our results indicate that the differential activation or inactivation of multiple cellular genes is important for the immortalization, as well as the transformation, of human cervical cells. Further, we suggest that our in vitro model system is useful for investigating the molecular mechanism of multistep cervical carcinogenesis. J. Cell. Biochem. 66: 309-321, 1997. © 1997 Wiley-Liss, Inc.
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  • 191
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    Journal of Cellular Biochemistry 66 (1997), S. 337-345 
    ISSN: 0730-2312
    Keywords: sea urchin ; embryo ; gelatinase ; metalloproteinase ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: We have partially purified and characterized an 87 kDa gelatinase activity expressed in later stage sea urchin embryos. Cleavage activity was specific for gelatin and no cleavage of sea urchin peristome type I collagen, bovine serum albumin or casein was detected. Magnesium and Zn2+ inhibited the gelatinase and Ca2+ protected against inhibition. Ethylenediamine tetracetic acid, ethylenebisoxyethylenenitriol tetraacetic acid and 1,10-phenanthroline were inhibitory, suggesting that the gelatinase is a Ca2+- and Zn2+-dependent metalloproteinase. No inhibition was detected with serine or cysteine protease inhibitors and the vertebrate matrix metalloproteinase (MMP) inhibitor, Batimastat, was also ineffective. The vertebrate MMP activator p-aminophenylmercuric acetate was without effect. These results allow us to identify both similarities and differences between echinoderm and vertebrate gelatinases. J. Cell. Biochem. 66: 337-345, 1997. © 1997 Wiley-Liss, Inc.
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  • 192
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    Journal of Cellular Biochemistry 66 (1997), S. 427-432 
    ISSN: 0730-2312
    Keywords: TGFβ ; transforming growth factor β ; Cdk ; cyclin-dependent kinase ; Kip ; cdk-inhibitor ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Loss of sensitivity to the negative growth regulator transforming growth factor β (TGFβ) is a feature of many different tumor types and is likely involved in tumor progression. In some cases this loss of sensitivity to TGFβ has been shown to be manifest in the absence of membrane-associated TGFβ receptor complexes, thus preventing initiation of antiproliferative signals from the cell surface. In others, loss of sensitivity to TGFβ-induced inhibitory signals has been attributed to loss of function of intracellular effectors of TGFβ-induced inhibitory signals due to mutation or allelic loss of effector genes and their products. The intracellular effectors of TGFβ inhibitory signals have been shown to be involved in the normal regulation of progression through the cell cycle, specifically during G1 phase. In this manner, elucidation of the mechanisms by which TGFβ inhibits cell growth not only helps us identify steps involved in tumor progression, but also allows us to better understand how cells regulate progression through the cell cycle. J. Cell. Biochem. 66:427-432, 1997. © 1997 Wiley-Liss, Inc.
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  • 193
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    Journal of Cellular Biochemistry 66 (1997), S. 16-26 
    ISSN: 0730-2312
    Keywords: heat stress ; kinase FA/GSK-3&agr ; tyrosine phosphorylation/activation ; cascade activation ; protein expression ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Exposure of A431 cells to a rapid temperature increase from 37° to 46°C could induce an increased expression (∼200% of control) and tyrosine phosphorylation/activation (∼300% of control) of protein kinase FA/glycogen synthase kinase-3α (kinase FA/GSK-3α) in a time-dependent manner, as demonstrated by an anti-kinase FA/GSK-3α immunoprecipitate kinase assay and by immunoblotting analysis with anti-kinase FA/GSK-3α and anti-phosphotyrosine antibodies. The heat induction on the increased expression of kinase FA/GSK-3α could be blocked by actinomycin D but not by genistein. In contrast, the heat induction on tyrosine phosphorylation/activation of kinase FA/GSK-3α could be blocked by genistein or protein tyrosine phosphatase, indicating that heat stress induces a dual control mechanism, namely, protein expression and subsequent tyrosine phosphorylation to cause cellular activation of kinase FA/GSK-3α. Taken together, the results provide initial evidence that kinase FA/GSK-3α represents a newly described heat stress-inducible protein subjected to tyrosine phosphorylation/activation, representing a new mode of signal transduction for the regulation of this human carcinoma dedifferentiation modulator and a new mode of heat induction on cascade activation of a protein kinase. J. Cell. Biochem. 66:16-26, 1997. © 1997 Wiley-Liss, Inc.
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  • 194
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    Journal of Cellular Biochemistry 66 (1997), S. 54-64 
    ISSN: 0730-2312
    Keywords: calpain activation ; platelet ; proteolysis of talin ; shear stress ; shear-induced platelet aggregation (SIPA) ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Fluid shear stress has been known to activate platelet reaction such as aggregation, but the exact mechanism of shear-induced platelet aggregation (SIPA) has not been fully understood. Calpain, an intracellular calcium-activated cysteine protease, is abundant in platelets and is considered to be activated and involved in the proteolytic processes during platelet activation. A possible activation of calpain in SIPA was investigated, employing a newly developed aggregometer and specific monoclonal antibodies to detect activation of calpain. When a shear stress gradient varying between 6 and 108 dyn/cm2 was applied to platelets, activation of μ-calpain was observed only in high-shear-stressed platelets, resulting in the proteolysis of talin. At 1 min after the onset of constant high shear stress of 108 dyn/cm2, μ-calpain activation and proteolysis of talin were detected and increased in a time-dependent manner. Constant shear stress more than 50 dyn/cm2, applied for 5 min, caused μ-calpain activation and proteolysis of talin, which were increased in a shear-force-dependent manner. Calpeptin, a calpain-specific peptide antagonist, caused the complete inhibition of both μ-calpain activation and proteolysis of talin, while SIPA profiles with calpeptin showed almost no change compared to those without calpeptin. These results suggest the possibility of calpain involvement in late phases of shear-induced platelet activation such as cytoskeletal reorganization. J. Cell. Biochem. 66:54-64, 1997. © 1997 Wiley-Liss, Inc.
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  • 195
    ISSN: 0730-2312
    Keywords: cell cycle control ; H4 gene promoter ; G1/S phase transition point ; CDP/cut ; interferon regulatory factor 2 ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The histone H4 gene promoter provides a paradigm for defining transcriptional control operative at the G1/S phase transition point in the cell cycle. Transcription of the cell cycle-dependent histone H4 gene is upregulated at the onset of S phase, and the cell cycle control element that mediates this activation has been functionally mapped to a proximal promoter domain designated Site II. Activity of Site II is regulated by an E2F-independent mechanism involving binding of the oncoprotein IRF2 and the multisubunit protein HiNF-D, which contains the homeodomain CDP/cut, CDC2, cyclin A, and the tumor suppressor pRb. To address mechanisms that define interactions of Site II regulatory factors with this cell cycle control element, we have investigated these determinants of transcriptional regulation at the G1/S phase transition in FDC-P1 hematopoietic progenitor cells. The representation and activities of histone gene regulatory factors were examined as a function of FDC-P1 growth stimulation. We find striking differences in expression of the pRb-related growth regulatory proteins (pRb/p105, pRb2/p130, and p107) following the onset of proliferation. pRb2/p130 is present at elevated levels in quiescent cells and declines following growth stimulation. By contrast, pRb and p107 are minimally represented in quiescent FDC-P1 cells but are upregulated at the G1/S phase transition point. We also observe a dramatic upregulation of the cellular levels of pRb2/p130-associated protein kinase activity when S phase is initiated. Selective interactions of pRb and p107 with CDP/cut are observed during the FDC-P1 cell cycle and suggest functional linkage to competency for DNA binding and/or transcriptional activity. These results are particularly significant in the context of hematopoietic differentiation where stringent control of the cell cycle program is requisite for expanding the stem cell population during development and tissue renewal. J. Cell. Biochem. 66:512-523, 1997. © 1997 Wiley-Liss, Inc.
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  • 196
    ISSN: 0730-2312
    Keywords: human prostatic cancer cell (PC-3) ; osteoblastic cell differentiation ; bone nodule formation ; alkaline phosphatase activity ; osteocalcin ; osteopontin ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Human prostatic carcinoma frequently metastasizes to bone tissue and activates bone metabolism, especially bone formation, at the site of metastasis. It has been reported that an extract of prostatic carcinoma and conditioned medium (CM) of a human prostatic carcinoma cell line, PC-3, established from a bone metastastic lesion, stimulate osteoblastic cell proliferation. However, there is little information about the effect of PC-3 CM on the differentiation of osteoblastic cells. In this study, we investigated the effect of PC-3 CM on the differentiation of two types of osteoblastic cells, primary fetal rat calvaria (RC) cells containing many undifferentiated osteoprogenitor cells, and ROS 17/2.8, a well-differentiated rat osteosarcoma cell line. PC-3 CM inhibited bone nodule formation and the activity of alkaline phosphatase (ALPase), an osteoblastic marker enzyme, on days 7, 14, and 21 (RC cells) or 3, 6, and 9 (ROS 17/2.8 cells) in a dose-dependent manner (5-30% CM). However, the CM did not affect cell proliferation or cell viability. PC-3 CM was found to markedly block the gene expression of ALPase and osteocalcin (OCN) mRNAs but had no effect on the mRNA expression of osteopontin (OPN), the latter two being noncollagenous proteins related to bone matrix mineralization. These findings suggest that PC-3 CM contains a factor that inhibits osteoblastic cell differentiation and that this factor may be involved in the process of bone metastasis from prostatic carcinoma. J. Cell. Biochem. 67:248-256, 1997. © 1997 Wiley-Liss, Inc.
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  • 197
    ISSN: 0730-2312
    Keywords: retinoblastoma family ; pRb ; p107 ; pRb2/p130 ; neuroblastoma ; differentiation ; B-myb ; c-myb ; E2F ; promoter ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Neuroblastoma cells can undergo neural differentiation upon treatment with a variety of chemical inducers and growth factors. During this process, many cell cycle-related genes are downregulated while differentiation-specific genes are triggered. The retinoblastoma family proteins, pRb, p107, and pRb2/p130, are involved in transcriptional repression of proliferation genes, mainly through their interaction with the E2F transcription factors. We report that pRb2/p130 expression levels increased during differentiation of neuroblastoma cell line LAN-5. On the other hand, both pRb and p107 decreased and underwent progressive dephosphorylation at late differentiation times. The expression of B-myb and c-myb, two targets of the retinoblastoma family proteins, were downregulated in association with the increase of pRb2/p130, which was detected as the major component of the complex with E2F on the E2F site of the B-myb promoter in differentiated cells. Interestingly, E2F4, a preferential partner of p107 and pRb2/p130, was upregulated and underwent changes in cellular localization during differentiation. In conclusion, our data suggest a major role of pRb2/p130 in the regulation of B-myb promoter during neural differentiation despite the importance of cofactors in modulating the function of the retinoblastoma family proteins. J. Cell. Biochem. 67:297-303, 1997. © 1997 Wiley-Liss, Inc.
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  • 198
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    Journal of Cellular Biochemistry 67 (1997), S. 338-352 
    ISSN: 0730-2312
    Keywords: basement membrane ; vitamin C ; degradation ; proline hydroxylation ; teratocarcinoma cells ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Ascorbic acid stimulates secretion of type I collagen because of its role in 4-hydroxyproline synthesis, but there is some controversy as to whether secretion of type IV collagen is similarly affected. This question was examined in differentiated F9 cells, which produce only type IV collagen, by labeling proteins with [14C]proline and measuring collagen synthesis and secretion. Hydroxylation of proline residues in collagen was inhibited to a greater extent in cells treated with the iron chelator α,α′-dipyridyl (97.7%) than in cells incubated without ascorbate (63.1%), but both conditions completely inhibited the rate of collagen secretion after 2-4 h, respectively. Neither treatment affected laminin secretion. Collagen synthesis was not stimulated by ascorbate even after treatment for 2 days. On SDS polyacrylamide gels, collagen produced by α,α′-dipyridyl-treated cells consisted mainly of a single band that migrated faster than either fully (+ ascorbate) or partially (- ascorbate) hydroxylated α1(IV) or α2(IV) chains. It did not contain interchain disulfide bonds or asn-linked glycosyl groups, and was completely digested by pepsin at 15°C. These results suggested that it was a degraded product lacking the 7 S domain and that it could not form a triple helical structure. In contrast, the partially hydroxylated molecule contained interchain disulfide bonds and it was cleaved by pepsin to collagenous fragments similar in size to those obtained from the fully hydroxylated molecule, but at a faster rate. Kinetic experiments and monensin treatment suggested that completely unhydroxylated type IV collagen was degraded intracellularly in the endoplasmic reticulum or cis Golgi. These studies indicate that partial hydroxylation of type IV collagen confers sufficient helical structure to allow interchain disulfide bond formation and resistance to pepsin and intracellular degradation, but not sufficient for optimal secretion. J Cell. Biochem. 67:338-352, 1997. Published 1997 Wiley-Liss, Inc.
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  • 199
    ISSN: 0730-2312
    Keywords: human osteoblasts ; human bone marrow stromal cells ; alkaline phosphatase ; osteopontin ; bone sialoprotein ; osteonectin ; decorin ; biglycan ; type I collagen ; osteocalcin ; mineralization ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: We have examined the effects of BMP-2 on the expression of bone matrix proteins in both human bone marrow stromal cells (HBMSC) and human osteoblasts (HOB) and their proliferation and mineralization. Both HBMSC and HOB express BMP-2/-4 type I and type II receptors. Treatment of these two cell types with BMP-2 for 4 weeks in the presence of β-glycerophosphate and ascorbic acid results in mineralization of their matrix. BMP-2 increases the mRNA level and activities of alkaline phosphatase and elevates the mRNA levels and protein synthesis of osteopontin, bone sialoprotein, osteocalcin, and α1(I) collagen in both cell types. Whereas the mRNA level of decorin is increased, the mRNA concentration of biglycan is not altered by BMP-2. No effect on osteonectin is observed. The effect of BMP-2 on bone matrix protein expression is dose dependent from 25 to 100 ng/ml and is evident after 1-7 days treatment. In the presence of BMP-2, proliferation of HBMSC and HOB is decreased under either serum-free condition or in the presence of serum. Thus, BMP-2 has profound effects on the proliferation, expression of most of the bone matrix proteins and the mineralization of both relatively immature human bone marrow stromal preosteoblasts and mature human osteoblasts. J. Cell. Biochem. 67:386-398, 1997. © 1997 Wiley-Liss, Inc.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
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  • 200
    ISSN: 0730-2312
    Keywords: artificial chromosome ; episome ; YAC ; nuclear matrix attachment region ; MAR ; replication origin ; DNA replication ; fluorescent in situ hybridization ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Three different mammalian origins of DNA replication, 343, S3, and X24, have been cloned into a 15.8 kb circular yeast vector pYACneo. Subsequent transfection into HeLa cells resulted in the isolation of several stably maintained clones. Two cell lines, C343e2 and CS3e1, were found to have sequences maintained as episomes in long-term culture with a stability per generation of approximately 80%. Both episomes also contain matrix attachment region (MAR) sequences which mediate the binding of DNA to the nuclear skeleton and are thought to play a role in DNA replication. Using high salt extraction of the nucleus and fluorescent in situ hybridization, we were able to demonstrate an association of the 343 episome with the nuclear matrix, most probably through functional MAR sequences that allow an association with the nuclear matrix and associated regions containing essential replication proteins. The presence of functional MARs in small episomal sequences may facilitate the replication and maintenance of transfected DNA as an episome and improve their utility as small episomal constructs, potential microchromosomes. J. Cell. Biochem. 67:439-450, 1997. © 1997 Wiley-Liss, Inc.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
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