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  • 1990-1994  (582)
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  • 1992  (582)
  • Computational Chemistry and Molecular Modeling  (582)
  • 101
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 44 (1992), S. 621-632 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We set up a model for the adsorption energy for a closed-packed hexagonal monolayer deposited on a substrate surface of the same structure, but different lattice constant, as a function of the epitaxy angle between the principal axis. The surface substrate potential is expressed in the form of a periodic potential with symmetry and periodicity of the substrate surface. The particular case of lead underpotentially deposited on Ag(111) is examined. © 1992 John Wiley & Sons, Inc.
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  • 102
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    International Journal of Quantum Chemistry 44 (1992), S. 773-779 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: There is a very simple criterion showing whether two (or more) Hamiltonians describe strictly additive effects. Based on this criterion, an attempt is made to develop techniques that would permit treatment of different not strictly additive interactions by separating out their components, which can be considered strictly additive, and describing the nonadditive (interference) effects as some perturbation. As a first result, a promising scheme has been developed for estimating matrix eigenvalues by an ∼ N2 procedure. © 1992 John Wiley & Sons, Inc.
    Additional Material: 4 Ill.
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  • 103
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    International Journal of Quantum Chemistry 42 (1992), S. 1759-1769 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The traditional Thomas-Fermi-Dirac model of the electronic structure for a neutral atom is deficient in that it predicts an infinite electron density at the nucleus and a sharp cutoff of the electron density at a finite radius. This study was carried out to remedy these faults in the model. Extending an idea used earlier in Thomas-Fermi (TF) theory [Proc. Natl. Acad. Sci. U.S.A. 83, 3577 (1985)], the Thomas-Fermi-Dirac (TFD) energy functional is minimized under constraints ∫ρ(r) dr = N, ∫e-2kr▽2ρ(r)dr 〈 ∞ and ∫(1 - e-k′r)ρ4/3(r)dr 〈 ∞, with k and k′ determined by the nuclear cusp condition and the correct asymptotic behavior. Optimum coordinate scaling also is considered. It is found that the TFD model is substantially improved by constraining the minimization search domain of the energy functional in this way. Energies are given for five noble gas atoms, and Compton profiles for these atoms are calculated. The behavior of electrons in momentum space is improved in both this modified TFD model and in the corresponding modified TF model.
    Additional Material: 3 Ill.
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  • 104
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    International Journal of Quantum Chemistry 42 (1992), S. 1771-1772 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 105
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 43 (1992) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 106
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    International Journal of Quantum Chemistry 44 (1992), S. xxvii 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 107
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    International Journal of Quantum Chemistry 44 (1992), S. 1-11 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: From the second-order self-energy of electron propagator theory, one can obtain total energies for the initial, N-electron state and the final, N ± l-electron states. Recent derivations and computational studies have demonstrated the feasibility of calculating effective first-order density matrices corresponding to the electron-binding energies. One-electron properties and energy gradients of the final states are thereby made accessible. Applications to. the ground and excited states of CaCN and to C3+ illustrate the capabilities of this method. © 1992 John Wiley & Sons, Inc.
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  • 108
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    International Journal of Quantum Chemistry 44 (1992), S. 55-83 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Diagrammatic and Coupled Cluster techniques are used to develop an approach to the single-particle Green's function G which concentrates on G directly rather than first approximating the irreducible self-energy and then solving Dyson's equation. As a consequence the ionization and attachment parts of the Green's function satisfy completely decoupled sets of equations. The proposed Coupled Cluster Green's Function method (CCGF) is intimately connected to both Coupled Cluster Linear Response Theory (CCLRT) and the Normal Coupled Cluster Method (NCCM). These relations are discussed in detail. © 1992 John Wiley & Sons, Inc.
    Additional Material: 14 Ill.
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  • 109
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    International Journal of Quantum Chemistry 41 (1992), S. 749-754 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A commercial computer algebra program, Mathematica, is used to generate the C matrix that characterizes our implementation of the Löwdin α-function method as applied to Slater-type orbitals. An example of a two-center overlap integral is done to show how the arbitrary precision capability of Mathematica can overcome severe cancellation errors encountered with programming in FORTRAN. This strategy is capable of being generalized to other multicenter molecular integrals. Mathematica programs are included.
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  • 110
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    International Journal of Quantum Chemistry 41 (1992) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 111
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    International Journal of Quantum Chemistry 41 (1992), S. 759-761 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 112
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    International Journal of Quantum Chemistry 41 (1992), S. 763-771 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The application of the Prüfer transformation to the Schrödinger equation leads to a nonlinear first-order differential equation. The advantage of this transformation is demonstrated in the calculation of the energy spectrum of the H2+ ion. In the second section, the classical problem is recalled and the transition to Prüfer transformation prepared. The definition of this transformations is contained in the third section. In the final paragraphs, the numerical results concerning the eigenvalues of H2+ energy are presented.
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  • 113
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    International Journal of Quantum Chemistry 41 (1992), S. 811-814 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An algebraic approach is proposed to calculate the Franck-Condon factors for the Morse potential of diatomic molecules. The Morse oscillator is approximated by means of a fourth-order anharmonic oscillator. In the second-quantized formalism, this anharmonic Hamiltonian is diagonalized by way of the Bogoliubov-Tyablikov transformation. The Franck-Condon factors are estimated using the harmonic frequency equivalent and the recurrence relations for the Franck-Condon factors of the harmonic oscillator. Overlap integrals are shown for three band systems and compared with values calculated with an RKR potential. Excellent agreement is achieved.
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  • 114
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    International Journal of Quantum Chemistry 41 (1992), S. 815-827 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure of 5α-androstane, the parent hydrocarbon of the hormonal steroids, has been computed by ab initio SCF methods in an STO-3G basis. The results are compared with existing MNDO computations and are used to discuss long-range electronic interactions between distant substituents that might be appended to rings A and D of 5α-androstane. It is thought that these interactions are mediated by the ribbonlike MO'S of the parent molecule.
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  • 115
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    International Journal of Quantum Chemistry 42 (1992) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 116
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    International Journal of Quantum Chemistry 41 (1992), S. 845-859 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Dynamic response of a helium atom in an intense laser field has been studied within a quantum fluid density functional framework. Several time-dependent quantities have been calculated by solving a recently derived generalized nonlinear Schrödinger equation.
    Additional Material: 9 Ill.
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  • 117
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    International Journal of Quantum Chemistry 41 (1992), S. 829-844 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A general solution to the one-dimensional time-independent Schrödinger equation is derived using the properties of the Laplace transform. The derivation assumes that the potential function is real and that it can be expressed as a Fourier series with a finite number of terms, which includes, but is not limited to, equations of the type of Hill's or Mathieu's equations. In the case where the Laplace transform of the potential function contains only simple first-order poles, then a complete closed-form solution is derived. In other cases, an approximate solution is derived and the symbolic algebra program MACSYMA is used to carry out the inverse Laplace transform. The MACSYMA implementation of this general solution is discussed and is applied to a sample problem, namely, the solution of eigenvalues of Mathieu's equation. Comparison is made between the eigenvalues obtained by this method and those obtained by another analytical solution of this equation, by Hill's method.
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  • 118
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    International Journal of Quantum Chemistry 42 (1992), S. 1-2 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 119
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    International Journal of Quantum Chemistry 42 (1992), S. 3-3 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 120
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    International Journal of Quantum Chemistry 42 (1992), S. 35-44 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Starting out with the electron gas, we make a survey of the reasons for the singularity in the derivative of the orbital energy with respect to the wave number at the Fermi level for a realistic extended metallic system. Some properties of the occupation function are reviewed and it is pointed out that the direct reason for the singularity resides in a divergent lattice sum originating in the exchange part of the orbital energy. Numerical aspects are discussed, in particular with reference to the difficulty in detecting this singularity in actual computations.
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  • 121
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    International Journal of Quantum Chemistry 42 (1992), S. 45-54 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electronic-phase transition associated with the singlet instability problem of the Hartree-Fock solution of the extended system is studied employing the metallic trans-polyacetylene. Concerning the eigenstates of the stability matrix set up for the crystal orbitals at the Fermi level, classification of the electronic phases is attempted and the origin of their emergence in relation to the interelectronic interaction is discussed.
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  • 122
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    International Journal of Quantum Chemistry 42 (1992), S. 5-33 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Silicon is taken as a test system for assessing present-day feasibility of calculations for crystalline solids of near-Hartree-Fock quality. The calculations have been performed using CRYSTAL, an ab initio Hartree-Fock crystalline-orbital LCAO program for periodic systems. The influence of the computational parameters that control the truncation of infinite sums on the results has been investigated; it is shown that a reasonable accuracy (numerical errors on total energy per atom below 10-3 a.u.) can be obtained while keeping the computational burden within manageable limits. The effect on the results of basis-set size and quality is discussed. A number of basis sets have been tested, from minimal to relatively extended sets (28 atomic orbitals per atom). The quality of the wave function has been checked using variational criteria and also through a comparison with experimental data, such as equilibrium geometry, bulk modulus, electron charge density, and electron momentum distribution. For the latter quantities, which are a measure of the accuracy of the one-electron density matrix, the best basis sets provide agreement with experiment that is almost within the experimental error. The correlation energy has been estimated using nonlocal density functionals, based on the one-electron density matrix: After this correction, the atomization energy agrees with experiment to within 2%. The generalization of the above analysis to other crystals is briefly discussed.
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  • 123
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    International Journal of Quantum Chemistry 43 (1992), S. 437-437 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 124
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    International Journal of Quantum Chemistry 43 (1992) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 125
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    International Journal of Quantum Chemistry 43 (1992), S. 463-479 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Dipole moments and static dipole polarizabilities have been calculated for a number of small molecules using the linear combination of Gaussian-type orbitals-local spin density method. The effect of augmenting standard orbital basis sets with polarization functions has been investigated. A set of optimum ζd, for use in calculating polarizabilities, has been derived for the first-row atoms C, N, O, and F. The results of this optimized doubly polarized double-zeta basis set compare well with results obtained using a double-zeta basis set augmented by four even-tempered ζd polarization functions. The results of the optimized basis set, and a basis set augmented with only a single ζd polarization function derived from it, compare very favorably with those obtained from Møller-Plesset perturbation theory and with experimental data. They show a marked improvement on results obtained using standard Hartree-Fock self-consistent-field molecular orbital methods where no treatment of electron-correlation is included.
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  • 126
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    International Journal of Quantum Chemistry 43 (1992), S. 481-510 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Woodward-Hoffmann (WH) Rules for the prediction of relative rates and stereochemistry of concerted reactions are based on considerations of the orbital symmetry of the reactants and products. Literally hundreds of reactions have been successfully categorized by these remarkably simple-appearing Rules. This paper develops a one-dimensional band model of these Rules. By explicit inclusion of the effects of an electromagnetic field in a standard gauge-invariant fashion, it can be shown that at certain levels of field strength the model suggests that the Rules may be reversed. This is because the Rules appear in the model as a consequence of a centrifugal angular momentum barrier that can be shifted by an electromagnetic field. This barrier could account for “aromatic” stabilization. As an additional effect, the model predicts flux-dependent oscillations and persistent currents for “aromatic” molecules due to the Aharonov-Bohm effect. The possible health effects of electromagnetic fields are speculated. The likelihood of experimental observations to verify the applicability of the model is discussed.
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  • 127
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    International Journal of Quantum Chemistry 43 (1992), S. 567-572 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A local model for the following reaction path is suggested. Exploratory calculations on simple isomerization reactions are undertaken. A local version of Hammond's postulate is proposed and tested on some model systems.
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  • 128
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    International Journal of Quantum Chemistry 42 (1992), S. 273-285 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A correction to quasi-degenerate variational perturbation theory is proposed that is similar to the average coupled pair functional method. The correction is shown to lack solid theoretical justification when applied to importance-selected multireference calculations and to systems with irreducible interpair contributions to the correlation energy. The method is shown to give improved results when applied to small model systems.
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  • 129
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    International Journal of Quantum Chemistry 42 (1992), S. 267-272 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The C—H bond dissociation energy of acetylene was computed by both ab initio approaches and density functional theory in a local density approximation (DFT-LDA). Structures and energies for acetylene and its dissociation products (the ethynyl and hydrogen radicals) are presented and compared. Using directly computed HCCH and HCC· energies and the exact H· value, the DFT-LDA calculations are found to yield C—H dissociation energies ranging from 129 to 131 kcal/mol, in good agreement with recent experimental and the highest level theoretical results. The DFT-LDA results show little dependence upon the computational procedure used to obtain geometries.
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  • 130
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    International Journal of Quantum Chemistry 42 (1992), S. 243-265 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A geometric interpretation of molecular charge redistributions [polarization (P) and/or charge transfer (CT)] is proposed. It regards the atoms-in-a-molecule (AIM) electron populations, N = (N1,…, Nm), as components of the global electron population vector, \documentclass{article}\pagestyle{empty}\begin{document}$\overrightarrow N \equiv N$\end{document}, in a system of orthogonal AIM electron population axes, \documentclass{article}\pagestyle{empty}\begin{document}$(\overrightarrow N _1 ,...,\overrightarrow N _m )$\end{document}. The normal (decoupled) representation corresponds to the rotated, principal axes coordinate system, \documentclass{article}\pagestyle{empty}\begin{document}$(\overrightarrow Q _1 ,...,\overrightarrow Q _m )$\end{document}, in which the canonical AIM hardness tensor becomes diagonal. Such transformation preserves N while not preserving the global electron population, N = ∑miNi, the usual parameter of the sensitivity analysis. The chemical potential, hardness, softness, and related concepts associated with N are defined and their properties examined. A simple geometric model of a chemical reaction is proposed within the \documentclass{article}\pagestyle{empty}\begin{document}$ \{ \overrightarrow Q _\alpha \}$\end{document} space. It consists of two intersecting effective states representing the charge activation of reactants and the charge relaxation of products, respectively. Only the normal modes of reactants, which include the CT component, can participate in the CT reaction coordinate, whereas the pure P modes contribute only to the entropy factor of the reaction rate constant. The implications of the model for the chemical reactivity are briefly explored. Finally, the linear vector space interpretation of charge sensitivities is given and applied to define the optimum hybrid charge displacement modes of reactants.
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  • 131
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    International Journal of Quantum Chemistry 42 (1992), S. 287-319 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A variational method is used to evaluate Bethe logarithm for the ground electronic state of the hydrogen molecular ion. The trial function employed in the calculations analytically represents the singular behavior of the exact solution of the variational problem for high virtual photon energies. This ensures that the accuracy of six significant figures can be obtained with basis sets not exceeding 70 functions. For the equilibrium internuclear separation of 2.0 bohr, the calculated value of the Bethe logarithm, equal to 2.31936, lies outside the bounds 2.35 and 2.56, representing the best previous estimation of this quantity. The accurate values of the Bethe logarithm for internuclear separations ranging from 0.6 to 6.0 bohr are tabulated and used to calculate the radiative corrections to the rovibrational energy levels of H2+, HD+, and D2+. The influence of these corrections on the transition and dissociation energies is also examined.
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  • 132
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    International Journal of Quantum Chemistry 42 (1992) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 133
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    International Journal of Quantum Chemistry 42 (1992), S. 339-347 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The properties of the n-electron wave functions with symplectic symmetries have been discussed. These functions are built up with two kinds of geminals. The well-known antisymmetrized geminal power (AGP) function is only a special case of them. The first- and second-order reduced density matrices and the natural expansions of these functions have been given, and the uniform expressions for system energies in the states corresponding to these functions have been deduced. It has been shown that the special case is probably another consistent ground state for the particle-hole propegator or random-phase approximation (RPA) besides the AGP function.
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  • 134
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    International Journal of Quantum Chemistry 42 (1992), S. 321-337 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A hydrogen molecule near a hard wall was considered within the Heiteler-London method using the atomic orbits in the presence of the wall. Rapidly converging expansions of the atomic wave functions were proposed. The asymptotics were obtained and studied. The atomic dipole moment induced by the surface gave rise to a long-range interatomic interaction. The covalent bond length increased near the wall. Depending on the orientation relative to the wall, the potential well can vanish. It is interpreted as an interaction between the atomic dipole moments. An approximation of the interatomic potential was proposed.
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  • 135
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    International Journal of Quantum Chemistry 42 (1992), S. 349-363 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: All-electron ab initio Hartree-Fock (HF), valence configuration interaction (CI), and multiconfiguration self-consistent-field (CASSCF) calculations have been applied to investigate the electronic states of the CrC molecule. The molecule is predicted as having four low-lying electronic states, 3∑-, 5∑-, 7∑-, and 9∑-, separated by an energy gap of 0.55 eV from the next higher-lying state, 1∑-, which is followed by the states 5Π and 7Π. The four lowest-lying electronic states are due to the coupling of the angular momenta of the 6Sg Cr+ ion with those of the 4Su C- anion. The chemical bond in the 3∑- ground state can be viewed as a quadruple bond composed of two σ and two π bonds. One σ bond is due to the formation of a molecular orbital that is doubly occupied. The remaining bonds, i.e., one σ and two π bonds, arise from valence-bond couplings. The π bonds originate from the valence-bond couplings of the electrons in the C 2pπ orbitals with those in the Cr 3dπ orbitals. The σ bond originates from the valence-bond coupling of the C 2pσ electron with an electron in the Cr 4s, 4p hybrid that is polarized away from the C atom.
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  • 136
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    International Journal of Quantum Chemistry 42 (1992), S. 403-409 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper, the reactions of HNCO or CH3NCO with methanol have been studied using the ab initio MO method. The geometries of the reactants and products have been optimized by the energy gradient method. The calculated results are in accordance with experiment. Using Powell's method, by the minimization of the Euclidean norm σ of the gradient, the structures of the transition state (TS) for the two reactions were obtained. The structures have been further confirmed as TS by finding that there is one and only one negative eigenvalue for their force constant matrix. The imaginary vibration mode corresponding to the TS was also discussed. The calculated activation barriers of these two reactions are 96.02 and 95.13 kJ/mol, respectively. It can be concluded that the alcoholysis reaction of isocyanate is a nucleophilic addition reaction with methanol as an electronic donor and isocyanate as an acceptor and that the hydroxyl hydrogen of CH3OH plays an important role in the reaction.
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  • 137
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    International Journal of Quantum Chemistry 42 (1992), S. 411-423 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Application of the SIMPLEX optimization method to define the mesh of the discretized version of the Griffin-Hill-Wheeler-Hartree-Fock (GHWHF) equations was studied. Improved discretization parameters with respect to the original method were obtained for atomic systems with two or four electrons and for the H2 molecule. For the atomic systems, the following correlations between the discretization parameters and the total energy were found: N = a · In(ΔE) + b; Ω0 = a′ · In(ΔΩ) + a″; and In(ΔΩ) = b′ · ln(N) + b″. These equations provide a systematic procedure to reach a desired degree of accuracy in the energy for the atomic systems studied as well as to fix the basis set to be employed. These equations are similar to those found earlier for eventempered basis sets and permit the establishment of a relationship between the two methods. The even-tempered method is also an approximate solution of the GHWHF equations. The optimized integral discretized basis is more efficient in representing small basis sets for atoms and the basis for the hydrogen molecule in comparison to the even-tempered one. The optimization procedure was successfully applied to generate the universal basis for the atomic systems studied.
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  • 138
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    International Journal of Quantum Chemistry 42 (1992), S. 365-401 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present theory for autocorrelation and spectral functions and for the description of molecular motions on a multidimensional potential energy surface. The basic idea is to express the autocorrelation functions by stepwise series expansions of the molecular surface using only local information. This approach thus presents one way to avoid the dimensionality catastrophe that is associated with dynamic studies using globally calculated and fitted polyatomic energy surfaces. The autocorrelation function is obtained by solving the quantum equations of motions in a set of locally defined internal coordinates uncoupled to rotation and translation. A Fourier transform of the autocorrelation function gives a time-evolved interpretation of the formation of the vibronic spectrum. Locally expanded and quadratically approximated Hamiltonians are assumed throughout the reaction path. The formalism implements in a direct fashion the information obtained from molecular gradient and Hessian techniques, so that the buildup of the spectrum can be followed along with the reaction walks on the molecular hypersurface. The method applies to unbound or quasi-bound as well as to bound potentials. In the latter case, the calculation of the autocorrelation function also provides a cost-effective way to perform Franck-Condon analyses, since, in contrast to conventional Franck-Condon methods, it avoids sum-over-state and basisset procedures completely. A set of 3N - 6 Cartesian coordinates are analyzed for the purpose of translational and rotational-free walks on a locally and quadratically expanded multidimensional potential energy surface without recoursing to the standard Eckart conditions and/or the necessity of performing supplementary transformations on the gradient vector and the Hessian matrix. Demonstrations of the formalism are given by calculations of time autocorrelation and spectral functions using locally expanded potentials corresponding to N2 2IIu and O2 2IIg photoionization.
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  • 139
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    International Journal of Quantum Chemistry 42 (1992), S. 425-438 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The nonadiabatic effects in the dynamic Fock equation (DFE) have been studied for the model system, polyacetylene, within the Hückel framework. The validity of the perturbation treatment of DFE has been investigated. It is followed by a proposed iterative procedure for solving the DFE. With this procedure, the self-consistent vibronic dressed electronic states (VDS) of polyacetylene have been obtained and described. It has been shown that (1) the pairing theorem for an alternant chain remains in the VDS of polyacetylene; (2) the modification of orbital energy due to the nonadiabatic effects decreases with the decreasing of absolute value of adiabatic orbital energy, implying that the energy gap originating from the nonadiabatic effects is too small to be significant; (3) the nonadiabatic mixing happens only for those adiabatic states having the same symmetry; and (4) a dynamic resonance exists between the starred and unstarred atoms, which contributes a dynamic delocalization to the polyacetylene. The size-dependence of the nonadiabatic effects in polyacetylene has been shown throughout the discussion.
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  • 140
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    International Journal of Quantum Chemistry 42 (1992), S. 439-444 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: For semiempirical SCF MO methods based on the NDDO assumption, the so-called one-center hybrid integrals of the type (ab/cd) are required. These integrals are expressed in terms of the Slater-Condon parameters (SCP) Rk(abcd) with different radial functions. The SCPs from atomic spectra are evaluated by taking into account configurational interaction (CI). As an example, the R1(sdpp), R2(sdpp), and R2(sddd) SCPs for Ti I, Ti II, and Ti III have been evaluated and the values of these parameters are compared with those calculated with Slater-type orbitals.
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  • 141
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    International Journal of Quantum Chemistry 42 (1992), S. 445-458 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper shows how the invariance of the energy to unitary rotations in the occupied orbitals and in the virtual orbitals can be used to determine some elements of the derivative molecular orbitals, which are important for gradient theory. Solution of the usual coupled-perturbed Hartree-Fock equations for these elements is thus unnecessary, eliminating considerable effort. We also give proofs which show clearly that special conditions are required.
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  • 142
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    International Journal of Quantum Chemistry 42 (1992), S. 475-488 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The vibrational self-consistent-field approximation is used to calculate excited vibrational energy levels of the water molecule in hyperspherical coordinates. The calculations are made for a global realistic Sorbie-Murrell-type potential surface for which exactum quantum variational results are known for comparison. The coupled SCF equations are solved using the discrete variable representation (DVR) method, which allows computation of the coupled multidimensional integrals in a very simple and efficient way. The results are in good agreement with exactum quantum calculations and are more accurate than SCF energy eigenvalues obtained using normal mode coordinates.
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  • 143
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    International Journal of Quantum Chemistry 42 (1992), S. 459-474 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An analysis of molecular shape has been performed along an ab initio reaction path of the PPO → OPP isomerization. In a first approximation, we have used the fused-sphere (van der Waals) model to represent shape. The results show that there is no one-to-one correspondence between the species defined in terms of shape and those based on an energy criterion. In contrast to the cases of most other isomerizations in triatomic molecules (e.g., the HCN isomerization), for the PPO isomerization there exists a stable intermediate. For the elementary reaction from the linear PPO (C∞v, reactant) to the cyclic P2O (C2v, intermediate), we found no distinct molecular shape type for the transition structure (between the reactant and the intermediate). In terms of shape, the nuclear configuration of the transition structure is more similar to that of the intermediate than that of the reactant. Using the PPO → OPP reaction as an example, in this work we discuss the implications of this result regarding possible measures of shape similarity and shape stability along reaction paths. We have performed a molecular-shape analysis of the electron density contour surfaces to test the reliability of the fused-sphere approximation. A comparison between the van der Waals and electron isodensity surface models at critical points shows that the former model can be qualitatively correct for molecular-shape descriptions along some reaction paths.
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  • 144
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    International Journal of Quantum Chemistry 42 (1992), S. 501-508 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The recently proposed topological approach to chemical reactivity in terms of the secondorder similarity index was applied to the detailed analysis of correlation effects in pericyclic reactivity. This analysis implies that (i) the electron correlation is generally more important in forbidden reactions than in the allowed ones; (ii) in contributing to the discrimination between the allowed and forbidden reactions, the Fermi correlation acts in parallel with the Coulomb one; and (iii) the so-called multibond reactions are more sensitive to electron correlation than are the electrocyclic ones.
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  • 145
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    International Journal of Quantum Chemistry 42 (1992), S. 489-499 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper, we propose a systematic method to include cumulatively atomic dipole moments and quadrupole moments in the fitting procedures of the potential-derived method to derive a set of atomic parameters to calculate the intermolecular electrostatic energy. This method is examined both qualitatively and quantitatively. The description of the charge distributions in polar molecules HF, H2O, and NH3 is agreeable to intuitions and the inverted lone-pair sites in H2O are explained naturally. It is also shown that atomic dipole moments and quadrupole moments should be included if one wants to calculate the electrostatic energy between molecules precisely. We also use Buckingham's model to calculate the orientations of some H-bonded complexes and explain the sources of nonlinear forces in terms of atomic dipole moments and quadrupole moments.
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  • 146
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    International Journal of Quantum Chemistry 42 (1992) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 147
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    Notes: Split valence basis sets adapted to Durand and Barthelat core pseudopotentials have been optimized for the three first rows of the main group elements. The reliability of these PS-21G basis functions has been checked by performing test calculations on about 30 small molecule and crystalline systems. These studies indicate a satisfactory overall agreement between the PS-21G results and those of all-electron calculations carried out with basis sets having similar valence-shell contractions.
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  • 148
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    International Journal of Quantum Chemistry 42 (1992), S. 525-526 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 149
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    International Journal of Quantum Chemistry 42 (1992), S. 523-523 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 150
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    International Journal of Quantum Chemistry 42 (1992), S. 527-528 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 151
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    International Journal of Quantum Chemistry 42 (1992), S. 529-546 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 152
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    International Journal of Quantum Chemistry 42 (1992), S. 547-580 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 153
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    International Journal of Quantum Chemistry 42 (1992), S. 581-590 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 154
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    International Journal of Quantum Chemistry 42 (1992), S. 591-626 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 4 Ill.
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  • 155
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    International Journal of Quantum Chemistry 44 (1992), S. 319-325 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio MO calculations including electron correlation with the 4-31G and 4-31G** basis sets were performed in order to study the formhydroxamic acid-formhydroximic acid tautomerism. The geometries, relative energies, and activation energy of the tautomer and transition state were determined. Based on total-energy calculations at the MP4/4-31G**//RHF/4-31G** plus the scaled zero-point vibration energy level, the energy of formhydroxamic acid is determined to be lower than that of formhydroximic acid by 40.7 kJ/mol. The activation energy of the formhydroxamic acid-formhydroximic acid tautomerism via a 1,3-intramolecular hydrogen shift is 151.4 kJ/mol. © 1992 John Wiley & Sons, Inc.
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  • 156
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    International Journal of Quantum Chemistry 44 (1992), S. 363-377 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The thermal unimolecular isomerization of fluoroethylidenes to the corresponding fluoroethylenes has been studied by the MNDO method. It has been shown that fluorine substitution on the carbene carbon increases the activation energy in comparison with the ethylidene rearrangement. To understand the reason for this increase in the activation energy, the charge-transfer effects have been analyzed. Fluorine substitution at other positions does not significantly affect the activation energies. The thermodynamic parameters for the reaction have been evaluated, using vibrational and rotational spectral data calculated in this work. RRKM calculations have been performed and high-pressure Arrhenius parameters calculated. Hydrogen-deuterium kinetic isotope effects indicate that the reaction rates are altered considerably on isotopic substitution, and the change in reaction rates depends upon the position of deuterium substitution, as well as on the number of hydrogens replaced by deuterium atoms. © 1992 John Wiley & Sons, Inc.
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  • 157
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    International Journal of Quantum Chemistry 44 (1992), S. 379-392 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic absorption spectra of tryptamine, 5-methoxytryptamine, 6-fluorotryptamine, N-acetyl-5-hydroxytryptamine, gramine, and melatonin were investigated. The observed transitions were π-π*, and the values of band maxima and intensity reflected an extent of interaction between the indole ring and the alkylamine side chain. Molecular orbital calculations at the level of INDO/S-CI were performed on all the studied molecules. State functions and transition energies were calculated. The correspondence between the experimental and theoretical results was satisfactory. © 1992 John Wiley & Sons, Inc.
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  • 158
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    International Journal of Quantum Chemistry 44 (1992), S. 393-404 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A systematic procedure has been developed to construct an electronic energy matrix for diatomics in the basis of antisymmetrized products of atomic wave functions represented as linear combinations of coupled momenta eigenfunctions. The exchange matrix element is expanded in powers of electronic interchange between atoms. General expressions of many-electron angular coefficients have been obtained for all types of products of one- and two-electron and overlap integrals in energy matrix elements. © 1992 John Wiley & Sons, Inc.
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 160
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    International Journal of Quantum Chemistry 44 (1992), S. 419-419 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 161
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    International Journal of Quantum Chemistry 44 (1992), S. 413-413 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No Absract.
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  • 162
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    International Journal of Quantum Chemistry 44 (1992), S. 405-411 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The one-range addition theorem [J. Fernández Rico, R. López, and G. Ramírez, Int. J. Quantum Chem. 34, 121 (1988)] for the Yukawa potential is rederived in a very simple manner using weakly convergent expansions [E. J. Weniger, J. Math. Phys. 26, 276 (1985)] of plane waves in the Fourier representation. It is discussed in which sense the addition theorem converges. The relation to Sturmian expansions of Coulomb Green functions is pointed out. © 1992 John Wiley & Sons, Inc.
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  • 163
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    International Journal of Quantum Chemistry 44 (1992), S. 421-422 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 164
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    International Journal of Quantum Chemistry 44 (1992), S. 423-425 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 165
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    International Journal of Quantum Chemistry 44 (1992), S. 469-476 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Semiempirical AM1 SCF—MO models for the cycloaddition between monosubstituted alkenes (RCH = CH2, R = Me, Ph, CF3) and tbutyl cyanoketene predict the lowest-energy transition state to be relatively polar and asynchronous in character and to have a cis relationship between the R and the tbutyl groups, in agreement with the experimentally determined product for R = Ph. We interpret this stereochemistry as resulting from the presence of a significant antarafacial component in the transition state, which enables these two bulky groups to adopt pseudoequatorial positions in which steric interactions are minimized. The alternative higher energy trans geometry forces the R and the cyano groups to adopt more sterically hindered pseudoaxial positions. Alternative biradical-like transition states inferred by others from ab initio MCSCF calculations on the reaction between ketene and ethene do not retain any significant antarafacial component on the ketene and, therefore, form less satisfactory models for this specific reaction. © 1992 John Wiley & Sons, Inc.
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  • 166
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    International Journal of Quantum Chemistry 44 (1992), S. 477-495 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The densities of states for small (TiO2)x-clusters, x = 1, 3, 6, 9, and 14, have been calculated by means of the INDO method. The shape of the valence bands' density of states (DOS) are discussed in terms of the distribution of coordination numbers. A one-slab cluster with uniform distribution of the coordination numbers was used to compare our calculations with experimental spectra. The photoelectric DOS and DOS for a cluster with an oxygen vacancy are in very good agreement with experimental findings for the TiO2 (001) surface. O1s core level shifts between a surfacelike and a bulklike oxygen atom have been estimated. It is concluded that the observed surface-bulk shift for the TiO2 (001) surface contains a substantial relaxation contribution. © 1992 John Wiley & Sons, Inc.
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  • 167
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    International Journal of Quantum Chemistry 44 (1992), S. 427-447 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Two kinds of quantum mechanical treatment are needed in chemistry: First, a treatment accurate enough to provide definitive solutions of chemical problems, in particular, the prediction of reactions and reaction mechanisms, without reference to experiment. As yet, treatments of this degree of accuracy are restricted to a few small atoms and molecules. Second, a treatment that chemists can use as a practical aid to their own research, on the same basis as mass spectrometry or NMR. Here, the need has been largely met by the series of progressively better semiempirical methods, in particular, those developed by our group. Since only the best and most expensive ab initio procedures are superior to ours and since the computing time they need is far greater, their use as a practical aid in chemistry is restricted. Our procedures, therefore, serve as a useful supplement to ab initio ones in areas where the latter cannot be applied effectively, as the leading ab initioists now fully recognize. Since the semiempirical approach is capable of almost unlimited further development, this situation is likely to continue in the foreseeable future. © 1992 John Wiley & Sons, Inc.
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  • 168
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    International Journal of Quantum Chemistry 44 (1992), S. 517-531 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The parametrization of semiempirical molecular orbital methods is reviewed. The parametrization procedures are classified in three categories. The newly proposed category of consistency of parameters in a row of elements is applied in SINDO1 to the Si atom. The calculations on test molecules and silicon clusters demonstrate that significant improvements in accuracy can be obtained in this way. © 1992 John Wiley & Sons, Inc.
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  • 169
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    International Journal of Quantum Chemistry 42 (1992), S. 837-847 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A recently developed Monte Carlo method is used to compute the 22S → 22P transition dipole moment of Li. This approach employs a guided Metropolis random walk with quantum Monte Carlo “side” walks to sample the required probability distributions. The transition dipole moment is employed to obtain the oscillator strength and excited-state lifetime. Our most accurately converged calculations yield an oscillator strength of 0.742(7) and excited-state lifetime of 27.41(35) ns. These results are in excellent agreement with precise experimental measurements of 0.742(1) and 27.29(4) ns, respectively. In addition, single-state expectation values are computed for both states. Monte Carlo parameters, such as the time step size and the convergence time, are varied in order to study their effect on computed results.
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  • 170
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    International Journal of Quantum Chemistry 42 (1992), S. 849-867 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The earlier numerical multiconfiguration Hartree-Fock atomic structure package was not designed with high-performance computers in mind. In this paper, some new algorithms based on spline-Galerkin methods are described that are appropriate for concurrent/vector architectures. The goal is to improve the level of numerical accuracy by several orders of magnitude using fewer basis functions than points in a numerical grid. Of critical importance is the robustness of the code: The most serious problems in the numerical implementation were associated with orthogonality constraints. In a spline basis approach, the orthogonality requirements can be integrated into quadratically convergent update procedures. These procedures are evaluated for a number of cases.
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  • 171
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    International Journal of Quantum Chemistry 44 (1992), S. 543-548 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To explain observed electron transfer rates between the terminal aromatic moieties in the arylsubstituted alanine dimer 1, a conformational analysis of the dipeptide was performed using a standard molecular mechanics force field. The resulting low-energy conformers could conveniently be grouped into two families with an average energy difference of ca. 2 kcal mol-1 and populations of 64% and 30%, respectively. These results correlate well with the 78:22 ratio of the two experimentally distinguishable decay processes for the radical anion of 1. © 1992 John Wiley & Sons, Inc.
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  • 172
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    International Journal of Quantum Chemistry 44 (1992), S. 549-563 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The AM1 semiempirical SCF MOmethod developed by Dewar and co-workers has been employed to compute possible interaction processes of the odorant molecules cocaine, methyl benzoate, and benzaldehyde with the biological substrate lysine. The only process predicted as possible in each case was nucleophilic attack on the carbonyl carbons of each odorant by the nitrogen lone pairs on lysine. The remote amino group of lysine in each case was predicted to react with lower activation enthalpy than did the α-amino group, a prediction consistent with preliminary experimental data from these laboratories. Although the computed activation enthalpies were high (ca. 40 kcal mol-1) for the gas-phase processes, it is conceivable that such processes could occur by alternate pathways with considerably lower ctivation energies in solvated media such as exists in the presence of mucus-containing olfactory binding protein in vertebrate olfactory reception. © 1992 John Wiley & Sons, Inc.
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  • 173
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    International Journal of Quantum Chemistry 44 (1992), S. 587-603 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: AM1 calculations have been used to study the effects of protonation on the structures, energies, and, in some cases, proton transfer reactions of guanine cytosine base pairs. Protonation at the guanine O6-position, or at various ring sites, leads to a relatively facile conversion to a surprisingly stable complementary base pairs following proton transfer to the cytosine 3-position. In the case of O6-protonation, this constitutes a direct route to guanine enolization. It is suggested that the spontaneous formation of apyrimidinic sites in nucleic acids take place via prior protonation of guanine moieties in the opposite strand. © 1992 John Wiley & Sons, Inc.
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  • 174
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    International Journal of Quantum Chemistry 44 (1992), S. 533-542 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Tight-binding, total-energy (TBTE) models have been successfully used to calculate the equilibrium surface atomic structures of a variety of materials, but are difficult to apply to substances with complicated interatomic repulsions. In these cases, the modified neglect of diatomic overlap (MNDO) method, which specifically includes longer-range interactions, may provide an effective alternative. We present new calculations of the surface atomic structure of the AlP (110) surface using both techniques. This surface, whose structure has been determined quantitatively using a low-energy, electron-diffraction intensity analysis, displays a well-known relaxation characteristic of (110) surfaces of zincblende-structure semiconductors. The TBTE model, parameterized to bulk AlP properties, provides a more accurate prediction of the relaxed surface atomic positions, although MNDO, parameterized to small molecules, produces acceptable results. Despite the greater demands placed by MNDO on computer resources, it may prove useful in the study of materials that are difficult to model within a TBTE framework. © 1992 John Wiley & Sons, Inc.
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  • 175
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    International Journal of Quantum Chemistry 44 (1992), S. 605-618 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: AM1 calculations have been used to study the effects of CH3+ attachment on the structures, energies, and, in some cases, proton transfer reactions of guanine cytosine base pairs. Methylation of both the guanine 3- and O6-positions is predicted to lead to chemically significant concentrations of intermediate base pairs arising from proton transfer from the guanine 1- to the cytosine 3-position. The possible biological implications of such intermediates in nucleic acids is discussed in relation to the formation of either doubly abasic sites or abasic sites opposite potentially miscoding DNA lesions. © 1992 John Wiley & Sons, Inc.
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  • 176
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    International Journal of Quantum Chemistry 44 (1992), S. 565-585 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new semiempirical SCF MO procedure available for prediction of the transition-metal complexes' binding energy and molecular geometry is developed. The features of the method are (i) an explicit account of the orthogonality of the basis set; (ii) use of a new formula for the resonance integral; and (iii) an effective account of the Coulomb correlation of electrons in the calculation of the two-electron integrals based on approach of a model Coulomb hole function. The parameterization for H, C, N, O, Co, and Ni atoms is presented. The results of NDDO/MC (NDDO for Metal Compounds) calculations of molecular geometries and binding energies for a number of organic compounds and more than 30 cobalt and nickel complexes are compared with the available experimental and ab initio data. The average absolute errors for the binding energies of organic molecules and metal complexes are 8.8 and 5.0 kcal/mol, respectively. © 1992 John Wiley & Sons, Inc.
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  • 177
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    International Journal of Quantum Chemistry 44 (1992) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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    Topics: Chemistry and Pharmacology
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  • 178
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    International Journal of Quantum Chemistry 44 (1992), S. 643-674 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A mathematical construction is presented that uniquely defines a set of spin-independent effective valence-shell Hamiltonian (Hv) three-body matrix elements. These spin-independent Hv matrix elements separate direct and exchange portions of the three-body Hv matrix elements and therefore provide the most natural form for comparisons with parameterization schemes of semiempirical electronic structure methods in which the three-body matrix elements are incorporated into semiempirical one- and two-body Hamiltonian matrix elements in an averaged manner. Ab initio Hv three-body matrix elements of O2 are computed through third order of quasidegenerate perturbation theory and are analyzed as a function of internuclear distance and atomic orbital overlap to aid in understanding how these three-body matrix elements may be averaged into semiempirical one- and two-body matrix elements. © 1992 John Wiley & Sons, Inc.
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  • 179
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    International Journal of Quantum Chemistry 44 (1992), S. 619-642 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this work, an algorithm was developed to study the potential energy surfaces in the coordinate spaces of molecules by a nonlocal way, in contrast to classic energy minimizers as the BFGS or the DFP method. This algorithm, based on the specificities of semiempirical methods, mixes simulated annealing and local searches to reduce computation costs. By this technique, the global energy minimum can be localized. Moreover, local minima that are close in energy to the global minimum are also obtained. If the search is not only for minima but for all stationary points (minima, saddle points…), then the energy is replaced by the gradient norm, which reaches its minimum values at stationary points. The annealing process is stopped before having accurately reached the global minimum and generates a list of geometries whose energies (respectively, whose gradients) are optimized by local minimizers. This list of geometries is shortened from the nearly equivalent geometries by a dynamic single-clustering analysis. The energy/gradient local minimizers act on the clustered list to produce a set of minima/stationary points. A targeted search of these points and reduction of the costs are reached by the way of several penalty functions. They eliminate - without energy calculation - most of the points generated by random walks on the potential energy surface. These penalty functions (on the total moment of inertia or on interatomic distances) are specific to the class of problem studied. They account for the nonrupture of either specific chemical bonds or rings in cyclic molecules, they assure that molecular systems are kept bonded, and they avoid the collapsing of atoms. © 1992 John Wiley & Sons, Inc.
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  • 180
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    International Journal of Quantum Chemistry 44 (1992), S. 691-698 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Both ab initio and semiempirical electronic structure calculations are used to investigate the molecular and electronic structures and eneregetic stabilities of an unusual bridged compound with the general formula [Y—SiH3—X—SiH3—Y]-, with Y = H or F and X = H, CH3, NH2, OH, F, or Cl. Most of these bridged anions are quite stable relative to YSiH3 + XSiH3Y-, and the stability is predicted to increase considerably when Y = H is replaced with Y = F.
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  • 181
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    International Journal of Quantum Chemistry 44 (1992), S. 679-690 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Stretching force constants for formamide and its seven associated species involving two to four molecules hydrogen-bonded through linear and cyclic configurations and 10 structures containing formamide hydrogen-bonded with one to five water molecules are reported. Since ab initio calculations are rather inconvenient to perform on such big clusters and are time-consuming, CNINDO MO calculations were carried out using the gradient method. The results demonstrate, on the one hand, the feasibility of semiempirical calculations for the evaluation of trends in force constants for big clusters where generally ab initio calculations become much involved and, on the other hand, explain the effect of hydrogen bonding and cooperativity on force constants and vibrational spectra of biologically important systems composed of formamide in the condensed phase and its aqueous solutions. The C=O and N—H stretching force constants are found to reduce significantly on hydrogen bonding. The reduction in force constant is further enhanced when two cyclic dimers become associated through a linear hydrogen bond. The results indicate justification for the stabilization of the formamide structure with two cyclic dimers hydrogen-bonded together. The reduction in the force constants on hydrogen bonding also reflect the cooperativity contribution. The C=O and C—N stretching force constants for the structures corresponding to formamide in liquid and aqueous solution phases are in agreement with the experimental vibrational frequencies reported.
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  • 182
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    International Journal of Quantum Chemistry 44 (1992), S. 723-741 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The most efficient optimization methods implemented in the semiempirical package AMPAC are presented. They concern the minimization of the energy or of the gradient norm by either pseudo-Newton or quadratic procedures, the search for transition states, and the intrinsic reaction coordinate in conjunction with variational transition-state theories. Nonlocal methods such as simulated annealing are also introduced. © 1992 John Wiley & Sons, Inc.
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  • 183
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    International Journal of Quantum Chemistry 44 (1992), S. 743-757 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We report structure-activity relation studies on 3′-azido-3′-deoxythymidine (AZT) and the implications to the biological activity of this class of compounds. The adiabatic potential surface (APS) of the title compound has been examined with the LCAO-MO-SCF method within the AMI approximation. This study has shown at least 13 minima, all separated by small energy differences and barriers. We have found that the equilibrium favors the anti,gg conformations, in variance to previous studies that predicted the syn,gg conformers to be the most stable forms. The most stable conformation (A) is favored by about 0.5 kcal/mol. However, calculations simulating a bulk-water environment suggest that the three lowest energy conformations (A, B, and C) become almost degenerate in solution. We suggest that the crystallographic conformation (L), characterized by a high dipole moment, and analogous to C, undergoes a strong stabilization upon rotation of the 3′-azido group and that these two conformers, C and L, are the only ones in which the hydroxyl proton is free of steric hindrance. This last point has some relevance from the biological point of view since it is generally accepted that this site must be phosphorylated in order for AZT to achieve its therapeutic effects. The above results suggest that, once in solution, conformer L isomerizes to C, which is the bioactive form of AZT. © 1992 John Wiley & Sons, Inc.
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  • 184
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    International Journal of Quantum Chemistry 44 (1992), S. 773-784 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The correlation of 2D conjugation and the nonlinear properties of a series of polycyclic aromatic compounds were studied by performing semiempirical calculations using the MOPAC package. For linear polyacenes, both linear and nonlinear properties are found to be increased as the number of six-membered rings increases. In general, the polarizabilities, 〈α〉, and second hyperpolarizabilities, 〈γ〉, are found to correlate very well with total resonance energies. In the case of first hyperpolarizabilities, 〈β〉, symmetry is the dominating factor. © 1992 John Wiley & Sons, Inc.
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  • 185
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    International Journal of Quantum Chemistry 44 (1992), S. 759-772 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We here report an AM1 study for the reaction of different types of radicals with the acetone enolate ion 1 and other ambident nucleophiles. The theoretical reactivity order determined is phenyl 〉 methyl 〉 tert-butyl ≅ bicyclo-[2.2.1]hept-1-yl. The activation energy for the coupling of aliphatic radicals is ascribed mainly to nonbonded interactions. Considering possible solvent effects, we propose the same order of reactivity in solution. The coupling reaction of phenyl radical with 1 is an exothermic process with nonactivation energy in the gas phase. Any energy barrier in solution is here ascribed to desolvation of the anion. The regiochemistry of the coupling of radicals with ambident nucleophiles such as 1, phenoxide, or phenylamide anions is also explained on a theoretical basis. © 1992 John Wiley & Sons, Inc.
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  • 186
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    International Journal of Quantum Chemistry 42 (1992) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 187
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    International Journal of Quantum Chemistry 42 (1992), S. 1073-1089 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An efficient ab initio method for electronic structure calculations on extended molecular systems is presented, along with some illustrative applications. A division of the system into subunits allows the interactions to be separated into short- and long-range contributions, leading to a reduction of the computational effort from the original fourth-power size-dependence to one that is approximately quadratic. The short-range contributions to the Fock matrix are obtained in an essentially conventional fashion, while the long-range interactions are evaluated using a two-center multipole expansion formalism. The number of short-range contributions grows only linearly with the number of subunits, while the long-range contributions grow as N2. Systematic studies of the computational efforts for systems of up to 99 water molecules organized as one-stranded chains, three-stranded chains, and three-dimensional clusters, as well as alkane chains with up to 69 carbon atoms, have been performed. In these model systems, the overall computational effort grows as NK where 1 〈 K 〈 2.
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    International Journal of Quantum Chemistry 42 (1992), S. 1091-1099 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio Hartree-Fock calculations are reported for the chemisorption of K on Ag using three different types of clusters to model the system. Geometry optimization is done in 4 degrees of freedom. It is found that since there is an absence of complete charge transfer between the adsorbate and substrate, the interaction can be interpreted as being predominately covalent in nature.
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  • 189
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    International Journal of Quantum Chemistry 42 (1992), S. 1115-1139 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The interaction of CO with the MgO(100) surface has been investigated by means of all electron cluster model calculations. The CO molecule is bound on the Mg2+ site of MgO with a chemisorption energy of about 0.2 eV. The binding mechanism is electrostatic in nature and arises almost entirely from the interaction of the weak electric field generated by the ionic surface and the CO charge distribution, with negligible contributions from chemical effects as the CO σ donation. When CO is bound through carbon, its vibrational frequency increases with respect to the gas-phase value. This shift, Δ, has been analyzed and decomposed into the sum of different contributions. It is found that the positive Δω does not arise entirely from the field-dipole interaction but is due, in part, to the increase in Pauli repulsion occurring when the C—O molecule vibrates in the presence of the surface “wall.” A stronger electrostatic interaction, bringing the CO adsorbate closer to the surface, increases this wall effect and results in a more pronounced positive ω shift. It is also found that the two CO orientations exhibit opposite shifts in ωe, thus, the two orientations can be distinguished, in principle, by IR spectroscopy. The analysis of our ab initio cluster wave functions gives a very different picture than the standard view of the metal-CO bond as arising from σ donation and π back donation.
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  • 190
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    International Journal of Quantum Chemistry 42 (1992), S. 1101-1114 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Reactions of a hydrogen molecule with a ZnO surface are studied by an ab initio method. For simulating the ZnO (10 1 0) surface, one ZnO molecule both with and without a Madelung potential is used. Since the electrostatic potential due to the ionic layer decreases exponentially, the effect of the layers deeper than the second one can be neglected. The Madelung potential is, therefore, expressed by the 32 point charges of ±0.5 situated on the first and second layers. Several low-lying states of ZnO and the ZnO + H2 system have been calculated by the symmetry-adapted cluster (SAC) and SAC-CI methods. It is found that the 1Σ+ state of ZnO is the ground state and catalytic active and the other states are inactive. ZnO (1Σ+) reacts with H2 and dissociatively adsorbs it with making Zn—H and O—H bonds. This occurs both with and without the Madelung potential. Without the Madelung potential, the heat of reaction is 81.3 kcal/mol and the reaction barrier is 14.0 kcal/mol. With the Madelung potential, the heat of reaction decreases to 73.5 kcal/mol and the barrier decreases to 11.5 kcal/mol. The mechanism of this reaction is the electron donation from the 2pπ orbital of O to the antibonding σu MO of H2 and the back-donation from the bonding σg MO of H2 to the LUMO of ZnO. In the intermediate stage of the reaction, the dipole of ZnO works to increase the overlap of the active MOS to make the reaction easier. Throughout the reaction, the in-plane 2pπ orbital of O and the HOMO of ZnO are inactive and work to keep the ZnO bond stable during the catalytic process.
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    International Journal of Quantum Chemistry 42 (1992), S. 1141-1147 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations have been performed to obtain analytical potential functions for describing the interactions between a platinum surface and both lithium and iodide ions. The accuracy of the results is tested by model calculations with large basis sets and the inclusion of correlation energy. The potentials obtained are to be used in computer simulations of electrochemical phenomena near solid-liquid interfaces.
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    International Journal of Quantum Chemistry 42 (1992), S. 1149-1169 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Atomic oxygen chemisorption has been studied for the fourfold hollow site of the Ni(100) surface and for the threefold hollow site of the Ni(111) surface. To model the Ni(100) surface, 10 different clusters in the range Ni5 to Ni41 were used, and for the Ni(111) surface, 11 different clusters in the range Ni13 to Ni43 were used. A detailed analysis of the orbital occupations of the cluster with and without oxygen for the different clusters shows that there are three different possible bonding mechanisms. In two of these, the basic feature is that a1 electrons of the cluster are kicked out by the oxygen 2pz orbital and moved to holes in the 2px, y orbitals. A picture where the oxygen electrons fit into the electronic structure of the cluster is emphasized. The third mechanism, which is applicable for only one cluster, can be described as the formation of two covalent bonds of E symmetry. The final best estimate of the oxygen chemisorption energy for the Ni(100) surface is about 130 kcal/mol, and for the Ni(111) surface, about 115 kcal/mol. In particular for the Ni(111) surface, an excited oxygen state with radical character is identified, which might be a catalytically important species. The excitation energy to reach this state should be on the order of 10 kcal/mol for the Ni(111) surface.
    Additional Material: 3 Ill.
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  • 193
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    International Journal of Quantum Chemistry 42 (1992), S. 1171-1184 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We report findings of 1000 ps molecular dynamics simulations of a bidimensional system of 4050 Lennard-Jones particles with electric dipoles, undergoing spinodal separation. This simple system is used to model the reversible aggregation of building blocks bearing specific and fixed adhesion sites at their surface. Aggregation regions so obtained resemble images of self-assembled biological structures. Statistical analyses of these regions evidence the interplay of thermodynamic instability and of interaction range between the attachment sites. They also illustrate some basic aspects of the morphogenesis of extended biomolecular/cellular structures, self-organized from initially homogeneous solutions.
    Additional Material: 8 Ill.
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  • 194
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    International Journal of Quantum Chemistry 42 (1992), S. 1237-1250 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The possiblity of creating a useful model for the electrostatic potential around the water molecule is examined from two different starting points. It is suggested that the simplest and most accurate model will have three point charges on the nuclei together with a diffuse Gaussian charge centered near the nuclear center of the charge. This will represent the lone-pair cloud, include the penetration effects, and improve the representation of the electron density. The alternative use of atomic dipoles is explored but seen to be less effective.
    Additional Material: 3 Ill.
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  • 195
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    International Journal of Quantum Chemistry 42 (1992), S. 1209-1235 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A molecular dynamics simulation for liquid water at room temperature is reported. A sample of 1000 water molecules has been analyzed with the Nieser-Corongiu-Clementi polarizable potential, to which is added vibrational flexibility. The sample was contained in a cubic box subject to periodic boundary conditions, a cutoff radius of 15.54 Å was used in evaluating energies and forces, the long-range interactions were taken into account with the reaction field method, and the integration of the equation of motion has been performed using a sixth-order Gear predictor-corrector algorithm. The simulation, after 35 ps of equilibration time, has been carried out for 10.4 ps with a time step of 1.25 × 10-16 s. The trajectories and velocities, collected in the production phase of the simulation, have been used to compute the geometry of the water molecule within the liquid, thermodynamical quantities, the pair correlation functions, the Dore neutron pair correlation function, X-ray and neutron scattering structure functions, translational, rotational, orientational autocorrelation functions and their Fourier transforms, mean square displacements, diffusion coefficients, and NMR relaxation times. A detailed study on the spectral density is presented, and good agreement is found with the most recent infrared, Raman, and neutron scattering laboratory data. All the simulated properties so far analyzed are in good agreement with experimental data, and, with confidence, we can assess that our ab initio polarizable potential with inclusion of vibrations is the most reliable water potential in today's literature for the description of water.
    Additional Material: 13 Ill.
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  • 196
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    International Journal of Quantum Chemistry 42 (1992), S. 1185-1208 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have analyzed in the Hartree-Fock approximation the carbon cluster C60 with a single-zeta [(9,5)/(2,1)] basis set and a double-zeta [(9,5)/(4,2)] basis set, the latter with and without 3d polarization functions. Estimates of the correlation energy correction were obained either using Becke's density functional theory or the Clementi-Chakravorty's electron-pair density approximation. The cluster's positive ion and singly and doubly charged negative ions have also been studied (doublets for C60+ and C60- and singlet and triplet for C602-) and computed both with a doublezeta basis set and defferent geometries or a double-zeta plus polarization basis set. The geometries considered include the one obtained by quantum molecular dynamics using the Car-Parrinello approximation and two additional near this minimum. The computed ionization potential and electron affinity are in reasonable agreement with the experiments considering the basis sets adopted. A lithium, a sodium, or a potassium atom or the corresponding positive ions have been placed at the center of the cluster and have been shown to form stable complexes: C60Li+, C60Li, C60Na+, C60Na, C60K+, and C60K. In addition, preliminary data with a calcium atom are reported. Computations on model cluster C5, C6, and C9 are also reported to show that one needs large basis sets, extended use of polarization functions, and correlation corrections for quantitative results, more accurate than ∼5 kcal/mol per carbon atom, in the total energy, as in this work.
    Additional Material: 10 Ill.
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  • 197
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    International Journal of Quantum Chemistry 44 (1992), S. 935-947 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The calculations of the magnetic susceptibility (χ) of the selected derivatives of cellulose have been performed using the localized molecular orbitals with the basis set of Gaussian functions. The advantages of the variational procedure in the framework of the approximation of the additivity of the localized molecular fragments for the evaluation of the magnetic susceptibility and nuclear magnetic shielding (σ) and the comparison with the NMR of high-resolution data have been discussed. Theoretical values for χ of the 50 sizable organic molecules have been presented. © 1992 John Wiley & Sons, Inc.
    Additional Material: 4 Ill.
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  • 198
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    International Journal of Quantum Chemistry 44 (1992), S. 949-983 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Instabilities of the restricted Hartree-Fock (HF) state of the two-dimensional extended Hubbard model under doping are studied with the linear response theory employing the linearized Bethe-Salpeter equation. Boundaries of the instabilities for the ordering vectors q = Q ≡ (π, π) and q = Q0 ≡ (0, 0) are given in terms of the interaction strength parameters at various doping levels. With doping, dominant instabilities generally change from ones for q = Q to ones for q = Q0. Broken symmetry phases obtained from the instabilities are also studied and classified using the group-theoretical technique. For q = Q, two more new phases are obtained in addition to the four nonmagnetic and five magnetic phases that have been already derived by one of the authors. For q = Q0, three nonmagnetic and five magnetic phases are obtained. Deriving the explicit forms of the charge current and spin current operators in the HF approximation, charge current and spin current densities in the broken symmetry states are discussed in detail. © 1992 John Wiley & Sons, Inc.
    Additional Material: 9 Ill.
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  • 199
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    International Journal of Quantum Chemistry 44 (1992), S. 997-1013 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new variational embedding method is derived. This method couples Nesbet's use of the R-matrix in the determination of the electronic structure of a crystal with the energy variational technique. The procedure is based on the observation that in many cases the properties for a spatial region of a system change by relatively small amounts when the region is transferred to another system. The transfer of the region from one system to another is accomplished by the embedding potential that is obtained by the inversion of the R-matrix and its energy derivative. It is shown that the interaction between two connected regions can be written as a surface term that is obtained by the continuity conditions on the wave function and its derivative on the surface. The existence of an identity resolution on the surface is demonstrated and this result is used to derive the R-matrix and its inverse. An application of this method to H2+ is given, which shows that the method is accurate and reliable if one chooses the appropriate basis set to construct the R-matrix and to perform the variation. © 1992 John Wiley & Sons, Inc.
    Additional Material: 2 Ill.
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  • 200
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 44 (1992), S. 1015-1025 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure of the Keggin anion (PW12O40)3- has been calculated by the DV-Xα method. The nature of the chemical bonds of the Keggin anion and the relationship between electronic structure and catalytic behavior are discussed. At the same time, the difference in electronic structure and the relationship in catalytic behavior between (PW12O40)3- and (PMo12O40)3- are compared. © 1992 John Wiley & Sons, Inc.
    Additional Material: 11 Ill.
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